Gchil8689.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8689.t1
Unique NameGchil8689.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length370
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:1247698..1248807 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703703.1
Preferred nameGALT
PFAMsGalP_UDP_tr_C,GalP_UDP_transf
Max annot lvl2759|Eukaryota
KEGG rclassRC00002
KEGG koko:K00965,ko:K20718
KEGG ReactionR00955
KEGG Pathwayko00052,ko00520,ko01100,ko04016,ko04917,map00052,map00520,map01100,map04016,map04917
KEGG ModuleM00362,M00554,M00632
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004335,GO:0005488,GO:0005506,GO:0005534,GO:0005536,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005829,GO:0005975,GO:0005996,GO:0006011,GO:0006012,GO:0006082,GO:0006090,GO:0006091,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006258,GO:0006464,GO:0006486,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0007610,GO:0007626,GO:0008108,GO:0008150,GO:0008152,GO:0008198,GO:0008270,GO:0008344,GO:0009056,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009225,GO:0009226,GO:0009227,GO:0009259,GO:0009260,GO:0009987,GO:0010646,GO:0010647,GO:0012505,GO:0016052,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0016779,GO:0017076,GO:0017144,GO:0018130,GO:0019200,GO:0019318,GO:0019320,GO:0019359,GO:0019362,GO:0019363,GO:0019388,GO:0019438,GO:0019439,GO:0019538,GO:0019637,GO:0019693,GO:0019752,GO:0030246,GO:0030534,GO:0030554,GO:0032101,GO:0032103,GO:0032104,GO:0032106,GO:0032107,GO:0032109,GO:0032501,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0033499,GO:0033500,GO:0033501,GO:0034404,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0034656,GO:0036094,GO:0036211,GO:0042125,GO:0042592,GO:0042866,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0043436,GO:0043531,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044262,GO:0044267,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046365,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046835,GO:0046872,GO:0046914,GO:0046939,GO:0047345,GO:0048029,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048878,GO:0050789,GO:0050794,GO:0051186,GO:0051188,GO:0052573,GO:0052574,GO:0055086,GO:0061615,GO:0061620,GO:0061622,GO:0061623,GO:0065007,GO:0065008,GO:0070085,GO:0070566,GO:0070569,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0080040,GO:0080134,GO:0080135,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901136,GO:1901137,GO:1901265,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576
Evalue2.26e-151
EggNOG OGsCOG1085@1|root,KOG2958@2759|Eukaryota
EC2.7.11.1,2.7.7.12
DescriptionUDP-glucose:hexose-1-phosphate uridylyltransferase activity
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8689Gchil8689Gracilaria chilensis NLEC103_M9 malegenetig00000088_pilon 1247698..1248807 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8689.t1.start1Gchil8689.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000088_pilon 1247698..1247700 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8689.t1.CDS1Gchil8689.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000088_pilon 1247698..1248807 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8689.t1.exon1Gchil8689.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000088_pilon 1247698..1248807 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8689.t1.stop1Gchil8689.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000088_pilon 1248805..1248807 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8689.t1Gchil8689.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000088_pilon 1247698..1248807 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8689.t1 ID=Gchil8689.t1|Name=Gchil8689.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=370bp
MPNSFDYTEHPHRRYNPLSGSWILCSPHRAKRPWQGSVEELPTDDRPEYD
PNDYLGPGNSRVNGSVQNPKYEHTFVFDNDFQALLNSTPHGEVGSVENND
LLVAKAVRGKCRVVCFSPKLNLTVAEMTVEEIKYVVDAWIDEYNTLSKLD
YIGHVQIFENKGQMMGCSNPHPHGQIWASEFVPEEPRIELENLEAYYKKK
GTHMLEDYVKLEMEAEERIVCQNDNFLAVVPFWATWPFEVLVLSKKRTPC
LKNFTDAMKSDLADIYRRVCARYDNLFTTLFPYSMGIHQSPTTNGTDPSE
HKYAHFHMHFYPPLLRSATVRKFMVGFEMLGESQRDLTAEQAAARLRDCS
EVHYNHARKKAQTDGNDTK*
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spliced messenger RNA

>Gchil8689.t1 ID=Gchil8689.t1|Name=Gchil8689.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1110bp|location=Sequence derived from alignment at tig00000088_pilon:1247698..1248807+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGAACAGCTTCGATTATACAGAGCACCCGCATCGCCGCTACAACCC
GCTCTCAGGGTCTTGGATTCTATGCTCACCGCACCGCGCAAAGCGTCCGT
GGCAAGGCAGCGTTGAGGAACTACCCACTGATGATCGTCCTGAATACGAT
CCCAACGACTATCTTGGTCCAGGAAACTCTCGTGTGAACGGTTCTGTTCA
GAATCCCAAGTACGAACACACATTTGTGTTTGACAATGATTTCCAGGCAC
TGCTAAACAGCACGCCCCACGGCGAAGTCGGTAGCGTTGAGAACAATGAT
CTACTCGTGGCAAAGGCTGTCCGTGGAAAGTGTCGCGTCGTCTGTTTCTC
TCCAAAACTCAACCTCACTGTCGCCGAGATGACCGTCGAGGAAATCAAAT
ATGTCGTGGACGCCTGGATCGATGAGTATAATACCCTCTCGAAACTAGAT
TACATAGGCCATGTGCAGATTTTTGAGAACAAGGGCCAGATGATGGGCTG
CTCAAATCCCCATCCTCATGGCCAAATCTGGGCCTCAGAGTTTGTTCCGG
AGGAGCCTCGTATCGAGCTGGAAAACCTTGAGGCTTATTATAAGAAGAAG
GGCACCCATATGCTGGAAGACTACGTCAAACTCGAGATGGAAGCCGAGGA
GCGAATTGTTTGTCAAAACGATAACTTTCTTGCCGTCGTTCCCTTCTGGG
CAACTTGGCCGTTCGAGGTACTAGTTCTCAGTAAGAAGCGCACACCTTGC
CTCAAAAATTTCACCGACGCAATGAAGAGCGATCTAGCTGATATATATCG
CCGTGTTTGTGCACGATACGACAATCTATTCACCACACTTTTCCCATATT
CCATGGGTATTCACCAATCGCCTACTACCAACGGGACGGACCCTAGCGAA
CACAAATATGCTCACTTTCACATGCACTTTTACCCACCACTACTTCGTAG
TGCGACTGTGCGGAAATTCATGGTTGGGTTCGAGATGCTCGGAGAGTCTC
AGAGAGATCTGACCGCGGAGCAAGCCGCGGCAAGACTGCGTGATTGCTCC
GAAGTACACTACAACCACGCTCGAAAGAAAGCGCAGACCGATGGCAACGA
TACCAAGTAA
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protein sequence of Gchil8689.t1

>Gchil8689.t1 ID=Gchil8689.t1|Name=Gchil8689.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=370bp
MPNSFDYTEHPHRRYNPLSGSWILCSPHRAKRPWQGSVEELPTDDRPEYD
PNDYLGPGNSRVNGSVQNPKYEHTFVFDNDFQALLNSTPHGEVGSVENND
LLVAKAVRGKCRVVCFSPKLNLTVAEMTVEEIKYVVDAWIDEYNTLSKLD
YIGHVQIFENKGQMMGCSNPHPHGQIWASEFVPEEPRIELENLEAYYKKK
GTHMLEDYVKLEMEAEERIVCQNDNFLAVVPFWATWPFEVLVLSKKRTPC
LKNFTDAMKSDLADIYRRVCARYDNLFTTLFPYSMGIHQSPTTNGTDPSE
HKYAHFHMHFYPPLLRSATVRKFMVGFEMLGESQRDLTAEQAAARLRDCS
EVHYNHARKKAQTDGNDTK*
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mRNA from alignment at tig00000088_pilon:1247698..1248807+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8689.t1 ID=Gchil8689.t1|Name=Gchil8689.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1110bp|location=Sequence derived from alignment at tig00000088_pilon:1247698..1248807+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCGAACAGCTTCGATTATACAGAGCACCCGCATCGCCGCTACAACCC
GCTCTCAGGGTCTTGGATTCTATGCTCACCGCACCGCGCAAAGCGTCCGT
GGCAAGGCAGCGTTGAGGAACTACCCACTGATGATCGTCCTGAATACGAT
CCCAACGACTATCTTGGTCCAGGAAACTCTCGTGTGAACGGTTCTGTTCA
GAATCCCAAGTACGAACACACATTTGTGTTTGACAATGATTTCCAGGCAC
TGCTAAACAGCACGCCCCACGGCGAAGTCGGTAGCGTTGAGAACAATGAT
CTACTCGTGGCAAAGGCTGTCCGTGGAAAGTGTCGCGTCGTCTGTTTCTC
TCCAAAACTCAACCTCACTGTCGCCGAGATGACCGTCGAGGAAATCAAAT
ATGTCGTGGACGCCTGGATCGATGAGTATAATACCCTCTCGAAACTAGAT
TACATAGGCCATGTGCAGATTTTTGAGAACAAGGGCCAGATGATGGGCTG
CTCAAATCCCCATCCTCATGGCCAAATCTGGGCCTCAGAGTTTGTTCCGG
AGGAGCCTCGTATCGAGCTGGAAAACCTTGAGGCTTATTATAAGAAGAAG
GGCACCCATATGCTGGAAGACTACGTCAAACTCGAGATGGAAGCCGAGGA
GCGAATTGTTTGTCAAAACGATAACTTTCTTGCCGTCGTTCCCTTCTGGG
CAACTTGGCCGTTCGAGGTACTAGTTCTCAGTAAGAAGCGCACACCTTGC
CTCAAAAATTTCACCGACGCAATGAAGAGCGATCTAGCTGATATATATCG
CCGTGTTTGTGCACGATACGACAATCTATTCACCACACTTTTCCCATATT
CCATGGGTATTCACCAATCGCCTACTACCAACGGGACGGACCCTAGCGAA
CACAAATATGCTCACTTTCACATGCACTTTTACCCACCACTACTTCGTAG
TGCGACTGTGCGGAAATTCATGGTTGGGTTCGAGATGCTCGGAGAGTCTC
AGAGAGATCTGACCGCGGAGCAAGCCGCGGCAAGACTGCGTGATTGCTCC
GAAGTACACTACAACCACGCTCGAAAGAAAGCGCAGACCGATGGCAACGA
TACCAAGTAA
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Coding sequence (CDS) from alignment at tig00000088_pilon:1247698..1248807+

>Gchil8689.t1 ID=Gchil8689.t1|Name=Gchil8689.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1110bp|location=Sequence derived from alignment at tig00000088_pilon:1247698..1248807+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCGAACAGCTTCGATTATACAGAGCACCCGCATCGCCGCTACAACCC
GCTCTCAGGGTCTTGGATTCTATGCTCACCGCACCGCGCAAAGCGTCCGT
GGCAAGGCAGCGTTGAGGAACTACCCACTGATGATCGTCCTGAATACGAT
CCCAACGACTATCTTGGTCCAGGAAACTCTCGTGTGAACGGTTCTGTTCA
GAATCCCAAGTACGAACACACATTTGTGTTTGACAATGATTTCCAGGCAC
TGCTAAACAGCACGCCCCACGGCGAAGTCGGTAGCGTTGAGAACAATGAT
CTACTCGTGGCAAAGGCTGTCCGTGGAAAGTGTCGCGTCGTCTGTTTCTC
TCCAAAACTCAACCTCACTGTCGCCGAGATGACCGTCGAGGAAATCAAAT
ATGTCGTGGACGCCTGGATCGATGAGTATAATACCCTCTCGAAACTAGAT
TACATAGGCCATGTGCAGATTTTTGAGAACAAGGGCCAGATGATGGGCTG
CTCAAATCCCCATCCTCATGGCCAAATCTGGGCCTCAGAGTTTGTTCCGG
AGGAGCCTCGTATCGAGCTGGAAAACCTTGAGGCTTATTATAAGAAGAAG
GGCACCCATATGCTGGAAGACTACGTCAAACTCGAGATGGAAGCCGAGGA
GCGAATTGTTTGTCAAAACGATAACTTTCTTGCCGTCGTTCCCTTCTGGG
CAACTTGGCCGTTCGAGGTACTAGTTCTCAGTAAGAAGCGCACACCTTGC
CTCAAAAATTTCACCGACGCAATGAAGAGCGATCTAGCTGATATATATCG
CCGTGTTTGTGCACGATACGACAATCTATTCACCACACTTTTCCCATATT
CCATGGGTATTCACCAATCGCCTACTACCAACGGGACGGACCCTAGCGAA
CACAAATATGCTCACTTTCACATGCACTTTTACCCACCACTACTTCGTAG
TGCGACTGTGCGGAAATTCATGGTTGGGTTCGAGATGCTCGGAGAGTCTC
AGAGAGATCTGACCGCGGAGCAAGCCGCGGCAAGACTGCGTGATTGCTCC
GAAGTACACTACAACCACGCTCGAAAGAAAGCGCAGACCGATGGCAACGA
TACCAAGTAA
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