Gchil8576.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8576.t1
Unique NameGchil8576.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length275
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:430445..431269 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8576Gchil8576Gracilaria chilensis NLEC103_M9 malegenetig00000088_pilon 430445..431269 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8576.t1.stop1Gchil8576.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000088_pilon 430445..430447 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8576.t1.CDS1Gchil8576.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000088_pilon 430445..431269 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8576.t1.exon1Gchil8576.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000088_pilon 430445..431269 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8576.t1.start1Gchil8576.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000088_pilon 431267..431269 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8576.t1Gchil8576.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000088_pilon 430445..431269 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8576.t1 ID=Gchil8576.t1|Name=Gchil8576.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=275bp
MGFKWSVHIAHTLAASLLQEAFHLFKQSRFSPSPRAQLFPLTHNSRPCHL
ERSCAELLHIIDEISVVVASCDDDPVLALQRIVRNTFIAAKLPIHDSKSS
DISQVVKDSIPFIGCIWNLAEDVVRPELAKTAKLATQAEELLQSYSIHFH
EWESLLGRTIWPTLLNRRLLSIMNAVFRVPMPSKRDDIITIHPSVRKEIE
MLHILAPLRAAPLNLPTSRILITFDASFIGGAVMFATIERWKSLCLWEKY
QNNCTLHRNESSSPPKLDELSRKI*
back to top

spliced messenger RNA

>Gchil8576.t1 ID=Gchil8576.t1|Name=Gchil8576.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=825bp|location=Sequence derived from alignment at tig00000088_pilon:430445..431269- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGATTCAAGTGGTCGGTACATATCGCCCACACTCTCGCAGCGTCACT
GCTGCAGGAAGCCTTCCATCTTTTTAAACAATCTCGTTTCTCTCCGTCCC
CACGTGCGCAGCTCTTCCCGCTCACACACAACAGCCGACCGTGTCACCTC
GAGAGGTCCTGTGCCGAGTTGCTGCATATTATTGACGAAATTTCAGTTGT
CGTGGCCAGCTGCGACGACGATCCCGTATTGGCGCTACAGCGCATAGTGC
GCAACACTTTCATTGCGGCGAAGCTGCCAATTCACGACTCAAAATCTTCT
GATATATCACAAGTTGTCAAGGACTCTATACCGTTCATCGGCTGCATCTG
GAATTTGGCGGAAGATGTTGTGCGACCGGAGCTGGCCAAAACTGCTAAGC
TGGCAACACAAGCGGAGGAGCTCTTGCAATCCTATTCTATTCACTTCCAT
GAGTGGGAGTCCCTTCTTGGCCGCACCATCTGGCCAACGCTTCTGAACCG
CCGCCTGCTGTCAATAATGAACGCCGTCTTCCGCGTCCCAATGCCCTCCA
AGAGAGATGATATTATCACTATACACCCATCAGTGCGCAAGGAAATAGAA
ATGCTTCACATATTAGCACCCCTACGCGCCGCACCCTTGAATTTACCAAC
AAGCCGCATACTTATTACCTTTGACGCCTCATTTATTGGCGGTGCGGTAA
TGTTTGCAACAATAGAACGTTGGAAATCTTTGTGCCTCTGGGAAAAGTAC
CAAAACAACTGCACACTCCACCGAAATGAAAGTAGTAGTCCACCCAAACT
AGATGAACTGTCGCGCAAGATATAA
back to top

protein sequence of Gchil8576.t1

>Gchil8576.t1 ID=Gchil8576.t1|Name=Gchil8576.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=275bp
MGFKWSVHIAHTLAASLLQEAFHLFKQSRFSPSPRAQLFPLTHNSRPCHL
ERSCAELLHIIDEISVVVASCDDDPVLALQRIVRNTFIAAKLPIHDSKSS
DISQVVKDSIPFIGCIWNLAEDVVRPELAKTAKLATQAEELLQSYSIHFH
EWESLLGRTIWPTLLNRRLLSIMNAVFRVPMPSKRDDIITIHPSVRKEIE
MLHILAPLRAAPLNLPTSRILITFDASFIGGAVMFATIERWKSLCLWEKY
QNNCTLHRNESSSPPKLDELSRKI*
back to top

mRNA from alignment at tig00000088_pilon:430445..431269-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8576.t1 ID=Gchil8576.t1|Name=Gchil8576.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=825bp|location=Sequence derived from alignment at tig00000088_pilon:430445..431269- (Gracilaria chilensis NLEC103_M9 male)
ATGGGATTCAAGTGGTCGGTACATATCGCCCACACTCTCGCAGCGTCACT
GCTGCAGGAAGCCTTCCATCTTTTTAAACAATCTCGTTTCTCTCCGTCCC
CACGTGCGCAGCTCTTCCCGCTCACACACAACAGCCGACCGTGTCACCTC
GAGAGGTCCTGTGCCGAGTTGCTGCATATTATTGACGAAATTTCAGTTGT
CGTGGCCAGCTGCGACGACGATCCCGTATTGGCGCTACAGCGCATAGTGC
GCAACACTTTCATTGCGGCGAAGCTGCCAATTCACGACTCAAAATCTTCT
GATATATCACAAGTTGTCAAGGACTCTATACCGTTCATCGGCTGCATCTG
GAATTTGGCGGAAGATGTTGTGCGACCGGAGCTGGCCAAAACTGCTAAGC
TGGCAACACAAGCGGAGGAGCTCTTGCAATCCTATTCTATTCACTTCCAT
GAGTGGGAGTCCCTTCTTGGCCGCACCATCTGGCCAACGCTTCTGAACCG
CCGCCTGCTGTCAATAATGAACGCCGTCTTCCGCGTCCCAATGCCCTCCA
AGAGAGATGATATTATCACTATACACCCATCAGTGCGCAAGGAAATAGAA
ATGCTTCACATATTAGCACCCCTACGCGCCGCACCCTTGAATTTACCAAC
AAGCCGCATACTTATTACCTTTGACGCCTCATTTATTGGCGGTGCGGTAA
TGTTTGCAACAATAGAACGTTGGAAATCTTTGTGCCTCTGGGAAAAGTAC
CAAAACAACTGCACACTCCACCGAAATGAAAGTAGTAGTCCACCCAAACT
AGATGAACTGTCGCGCAAGATATAA
back to top

Coding sequence (CDS) from alignment at tig00000088_pilon:430445..431269-

>Gchil8576.t1 ID=Gchil8576.t1|Name=Gchil8576.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=825bp|location=Sequence derived from alignment at tig00000088_pilon:430445..431269- (Gracilaria chilensis NLEC103_M9 male)
ATGGGATTCAAGTGGTCGGTACATATCGCCCACACTCTCGCAGCGTCACT
GCTGCAGGAAGCCTTCCATCTTTTTAAACAATCTCGTTTCTCTCCGTCCC
CACGTGCGCAGCTCTTCCCGCTCACACACAACAGCCGACCGTGTCACCTC
GAGAGGTCCTGTGCCGAGTTGCTGCATATTATTGACGAAATTTCAGTTGT
CGTGGCCAGCTGCGACGACGATCCCGTATTGGCGCTACAGCGCATAGTGC
GCAACACTTTCATTGCGGCGAAGCTGCCAATTCACGACTCAAAATCTTCT
GATATATCACAAGTTGTCAAGGACTCTATACCGTTCATCGGCTGCATCTG
GAATTTGGCGGAAGATGTTGTGCGACCGGAGCTGGCCAAAACTGCTAAGC
TGGCAACACAAGCGGAGGAGCTCTTGCAATCCTATTCTATTCACTTCCAT
GAGTGGGAGTCCCTTCTTGGCCGCACCATCTGGCCAACGCTTCTGAACCG
CCGCCTGCTGTCAATAATGAACGCCGTCTTCCGCGTCCCAATGCCCTCCA
AGAGAGATGATATTATCACTATACACCCATCAGTGCGCAAGGAAATAGAA
ATGCTTCACATATTAGCACCCCTACGCGCCGCACCCTTGAATTTACCAAC
AAGCCGCATACTTATTACCTTTGACGCCTCATTTATTGGCGGTGCGGTAA
TGTTTGCAACAATAGAACGTTGGAAATCTTTGTGCCTCTGGGAAAAGTAC
CAAAACAACTGCACACTCCACCGAAATGAAAGTAGTAGTCCACCCAAACT
AGATGAACTGTCGCGCAAGATATAA
back to top