Gchil8568.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8568.t1
Unique NameGchil8568.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length247
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:338097..339071 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703548.1
Preferred nameGID8
PFAMsCLTH,LisH
Max annot lvl2759|Eukaryota
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006109,GO:0006111,GO:0006508,GO:0006511,GO:0006807,GO:0007089,GO:0007346,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010498,GO:0010564,GO:0010675,GO:0010677,GO:0010906,GO:0019222,GO:0019538,GO:0019941,GO:0030054,GO:0030163,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032991,GO:0034657,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043255,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045721,GO:0045787,GO:0045912,GO:0045931,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051603,GO:0051726,GO:0062012,GO:0062014,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090068,GO:1900087,GO:1901564,GO:1901565,GO:1901575,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902806,GO:1902808,GO:2000045
Evalue1.16e-94
EggNOG OGsKOG2659@1|root,KOG2659@2759|Eukaryota
Descriptionnegative regulation of gluconeogenesis
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8568Gchil8568Gracilaria chilensis NLEC103_M9 malegenetig00000088_pilon 338097..339071 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8568.t1Gchil8568.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000088_pilon 338097..339071 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8568.t1.stop1Gchil8568.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000088_pilon 338097..338099 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8568.t1.CDS1Gchil8568.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000088_pilon 338097..338706 -
Gchil8568.t1.CDS2Gchil8568.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000088_pilon 338814..338941 -
Gchil8568.t1.CDS3Gchil8568.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00000088_pilon 339069..339071 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8568.t1.exon1Gchil8568.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000088_pilon 338097..338706 -
Gchil8568.t1.exon2Gchil8568.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000088_pilon 338814..338941 -
Gchil8568.t1.exon3Gchil8568.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00000088_pilon 339069..339071 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8568.t1.intron1Gchil8568.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000088_pilon 338707..338813 -
Gchil8568.t1.intron2Gchil8568.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00000088_pilon 338942..339068 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8568.t1.start1Gchil8568.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000088_pilon 339069..339071 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8568.t1 ID=Gchil8568.t1|Name=Gchil8568.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=247bp
MQQISLSLIARIQQRVKMNTEEKKTVFSNETWEAELADMPVNKSEMNKLI
MNYLVIEGYKEAAEKFEEECGTPPGIDLPSISDRMATRVAIQRGDIQSAI
ERANDLNPLILDENPQLFFHLQQQKLIELIRNGDVEAALEFAEKELAPRG
EENPQFLTELERTMALLAFEDKSKCPVSDLLEPAQRQKTASELNAAILTS
QCQEKDPKLPSLLKMLLWAQDQLKKKAEFPVMDIETAILHSSKESS*
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spliced messenger RNA

>Gchil8568.t1 ID=Gchil8568.t1|Name=Gchil8568.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=741bp|location=Sequence derived from alignment at tig00000088_pilon:338097..339071- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAACAAATTTCTCTGTCGCTCATTGCAAGAATACAACAACGCGTGAA
AATGAACACGGAGGAAAAAAAGACCGTCTTTAGCAATGAAACATGGGAGG
CAGAGCTAGCTGACATGCCTGTCAACAAGAGTGAAATGAACAAGTTGATC
ATGAACTACCTCGTCATCGAAGGCTACAAAGAAGCTGCCGAAAAGTTCGA
GGAGGAGTGCGGCACTCCACCGGGCATAGACCTTCCAAGCATTTCCGACC
GCATGGCTACTCGCGTCGCCATTCAGCGCGGCGACATCCAGTCTGCAATA
GAGCGTGCCAACGATCTCAACCCTCTAATTCTCGATGAGAACCCACAGCT
CTTCTTTCACTTGCAGCAACAAAAACTTATAGAACTAATTAGAAACGGCG
ACGTAGAGGCAGCCCTTGAGTTTGCAGAAAAAGAGCTGGCTCCTCGGGGC
GAGGAAAATCCTCAATTTCTTACCGAATTGGAGAGAACCATGGCGCTGCT
TGCATTTGAAGACAAATCCAAATGCCCCGTATCAGACCTTTTGGAGCCTG
CTCAGCGCCAAAAGACTGCAAGCGAGCTTAACGCAGCTATATTGACCAGC
CAATGCCAAGAGAAGGACCCAAAGTTGCCGTCACTACTCAAAATGTTACT
TTGGGCGCAAGATCAATTGAAGAAGAAAGCCGAGTTTCCCGTGATGGACA
TAGAAACGGCTATACTGCATTCTTCCAAAGAGTCTTCATAA
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protein sequence of Gchil8568.t1

>Gchil8568.t1 ID=Gchil8568.t1|Name=Gchil8568.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=247bp
MQQISLSLIARIQQRVKMNTEEKKTVFSNETWEAELADMPVNKSEMNKLI
MNYLVIEGYKEAAEKFEEECGTPPGIDLPSISDRMATRVAIQRGDIQSAI
ERANDLNPLILDENPQLFFHLQQQKLIELIRNGDVEAALEFAEKELAPRG
EENPQFLTELERTMALLAFEDKSKCPVSDLLEPAQRQKTASELNAAILTS
QCQEKDPKLPSLLKMLLWAQDQLKKKAEFPVMDIETAILHSSKESS*
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mRNA from alignment at tig00000088_pilon:338097..339071-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8568.t1 ID=Gchil8568.t1|Name=Gchil8568.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=975bp|location=Sequence derived from alignment at tig00000088_pilon:338097..339071- (Gracilaria chilensis NLEC103_M9 male)
ATGGTACGAGTTCTTTCAAAGCTTCTTCACACTATCGCTGACTTTCCCGA
CGGTTCTATGCACCGCTTTCTGACGTTCAAATCCAACCGCACTGTGTTTG
CTACTTCTCCCACATTTTGCGCTAACGAAGCAACAAATTTCTCTGTCGCT
CATTGCAAGAATACAACAACGCGTGAAAATGAACACGGAGGAAAAAAAGA
CCGTCTTTAGCAATGAAACATGGGAGGCAGAGCTAGCTGACATGCCTGTC
AACAAGAGGTAAGCATATCAATCGCTCCTTGCTGCTCGCTCGTCTTGAAC
CTGCCGGTCTTTTGTCGCGTCTCTTATGCTAAAACCAACCACATTCTTGG
CCAAATTCTATGCAGTGAAATGAACAAGTTGATCATGAACTACCTCGTCA
TCGAAGGCTACAAAGAAGCTGCCGAAAAGTTCGAGGAGGAGTGCGGCACT
CCACCGGGCATAGACCTTCCAAGCATTTCCGACCGCATGGCTACTCGCGT
CGCCATTCAGCGCGGCGACATCCAGTCTGCAATAGAGCGTGCCAACGATC
TCAACCCTCTAATTCTCGATGAGAACCCACAGCTCTTCTTTCACTTGCAG
CAACAAAAACTTATAGAACTAATTAGAAACGGCGACGTAGAGGCAGCCCT
TGAGTTTGCAGAAAAAGAGCTGGCTCCTCGGGGCGAGGAAAATCCTCAAT
TTCTTACCGAATTGGAGAGAACCATGGCGCTGCTTGCATTTGAAGACAAA
TCCAAATGCCCCGTATCAGACCTTTTGGAGCCTGCTCAGCGCCAAAAGAC
TGCAAGCGAGCTTAACGCAGCTATATTGACCAGCCAATGCCAAGAGAAGG
ACCCAAAGTTGCCGTCACTACTCAAAATGTTACTTTGGGCGCAAGATCAA
TTGAAGAAGAAAGCCGAGTTTCCCGTGATGGACATAGAAACGGCTATACT
GCATTCTTCCAAAGAGTCTTCATAA
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Coding sequence (CDS) from alignment at tig00000088_pilon:338097..339071-

>Gchil8568.t1 ID=Gchil8568.t1|Name=Gchil8568.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=741bp|location=Sequence derived from alignment at tig00000088_pilon:338097..339071- (Gracilaria chilensis NLEC103_M9 male)
ATGCAACAAATTTCTCTGTCGCTCATTGCAAGAATACAACAACGCGTGAA
AATGAACACGGAGGAAAAAAAGACCGTCTTTAGCAATGAAACATGGGAGG
CAGAGCTAGCTGACATGCCTGTCAACAAGAGTGAAATGAACAAGTTGATC
ATGAACTACCTCGTCATCGAAGGCTACAAAGAAGCTGCCGAAAAGTTCGA
GGAGGAGTGCGGCACTCCACCGGGCATAGACCTTCCAAGCATTTCCGACC
GCATGGCTACTCGCGTCGCCATTCAGCGCGGCGACATCCAGTCTGCAATA
GAGCGTGCCAACGATCTCAACCCTCTAATTCTCGATGAGAACCCACAGCT
CTTCTTTCACTTGCAGCAACAAAAACTTATAGAACTAATTAGAAACGGCG
ACGTAGAGGCAGCCCTTGAGTTTGCAGAAAAAGAGCTGGCTCCTCGGGGC
GAGGAAAATCCTCAATTTCTTACCGAATTGGAGAGAACCATGGCGCTGCT
TGCATTTGAAGACAAATCCAAATGCCCCGTATCAGACCTTTTGGAGCCTG
CTCAGCGCCAAAAGACTGCAAGCGAGCTTAACGCAGCTATATTGACCAGC
CAATGCCAAGAGAAGGACCCAAAGTTGCCGTCACTACTCAAAATGTTACT
TTGGGCGCAAGATCAATTGAAGAAGAAAGCCGAGTTTCCCGTGATGGACA
TAGAAACGGCTATACTGCATTCTTCCAAAGAGTCTTCATAA
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