Gchil7358.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7358.t1
Unique NameGchil7358.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length225
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:639925..640599 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703636.1
Preferred nameCLPP4
PFAMsCLP_protease
Max annot lvl2759|Eukaryota
KEGG koko:K01358
KEGG Pathwayko04112,ko04212,map04112,map04212
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006996,GO:0008150,GO:0009368,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009657,GO:0009658,GO:0009840,GO:0009941,GO:0009987,GO:0016020,GO:0016043,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0032991,GO:0034357,GO:0040034,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0048506,GO:0048509,GO:0048510,GO:0050789,GO:0050793,GO:0055035,GO:0065007,GO:0071840
Evalue7.72e-107
EggNOG OGsCOG0740@1|root,KOG0840@2759|Eukaryota
EC3.4.21.92
Descriptionserine-type endopeptidase activity
COG categoryOU
BRITEko00000,ko00001,ko01000,ko01002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7358Gchil7358Gracilaria chilensis NLEC103_M9 malegenetig00000007_pilon 639925..640599 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7358.t1.start1Gchil7358.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000007_pilon 639925..639927 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7358.t1.CDS1Gchil7358.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 639925..640599 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7358.t1.exon1Gchil7358.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 639925..640599 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7358.t1.stop1Gchil7358.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000007_pilon 640597..640599 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7358.t1Gchil7358.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000007_pilon 639925..640599 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7358.t1 ID=Gchil7358.t1|Name=Gchil7358.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=225bp
MVPEPSPQPPADPPKPDAPPSVPPPVPMVAVGDNSQMDIYSRLAKDRILL
LGRPVDDEVANSLVAQMLFLASEDPDKDITIYINSPGGSVSAGLAIYDTM
QFIPCDVQTICFGTAASMGAFLLGAGTKGKRKSLPNARIMIHQPLGGAQG
QAADIEIQAKEILFVKALLNGYMADFTGQPMEKIEMDTDRDFFMTAIDAQ
EYGIIDEVIKTKVDVPVLKRPSLV*
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spliced messenger RNA

>Gchil7358.t1 ID=Gchil7358.t1|Name=Gchil7358.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=675bp|location=Sequence derived from alignment at tig00000007_pilon:639925..640599+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCCCAGAACCCAGTCCCCAGCCGCCGGCCGACCCACCAAAGCCTGA
TGCACCCCCTTCTGTACCGCCACCAGTGCCCATGGTTGCCGTTGGAGACA
ACTCACAAATGGACATTTACTCCCGCCTCGCAAAAGATCGTATTCTACTC
CTTGGTCGCCCGGTCGACGATGAGGTTGCAAACTCGCTTGTGGCCCAAAT
GCTTTTCCTTGCATCCGAAGACCCGGATAAGGATATCACTATCTACATCA
ACTCCCCGGGCGGAAGTGTATCCGCTGGCCTTGCTATTTATGACACAATG
CAATTCATTCCCTGCGATGTGCAAACAATTTGCTTTGGCACAGCGGCCAG
TATGGGTGCTTTTCTACTTGGCGCCGGTACAAAAGGAAAGAGGAAGAGCC
TTCCGAATGCCCGTATCATGATTCATCAACCGCTTGGAGGAGCACAAGGA
CAGGCCGCCGATATTGAAATTCAAGCCAAGGAAATCCTCTTTGTCAAGGC
TCTGCTGAACGGATACATGGCTGACTTTACCGGCCAGCCCATGGAAAAGA
TCGAGATGGATACGGACCGTGATTTCTTTATGACCGCAATTGATGCACAA
GAGTACGGTATTATTGATGAAGTTATCAAGACAAAGGTTGATGTTCCGGT
ACTAAAGAGGCCCTCTCTTGTGTAA
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protein sequence of Gchil7358.t1

>Gchil7358.t1 ID=Gchil7358.t1|Name=Gchil7358.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=225bp
MVPEPSPQPPADPPKPDAPPSVPPPVPMVAVGDNSQMDIYSRLAKDRILL
LGRPVDDEVANSLVAQMLFLASEDPDKDITIYINSPGGSVSAGLAIYDTM
QFIPCDVQTICFGTAASMGAFLLGAGTKGKRKSLPNARIMIHQPLGGAQG
QAADIEIQAKEILFVKALLNGYMADFTGQPMEKIEMDTDRDFFMTAIDAQ
EYGIIDEVIKTKVDVPVLKRPSLV*
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mRNA from alignment at tig00000007_pilon:639925..640599+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7358.t1 ID=Gchil7358.t1|Name=Gchil7358.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=675bp|location=Sequence derived from alignment at tig00000007_pilon:639925..640599+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTCCCAGAACCCAGTCCCCAGCCGCCGGCCGACCCACCAAAGCCTGA
TGCACCCCCTTCTGTACCGCCACCAGTGCCCATGGTTGCCGTTGGAGACA
ACTCACAAATGGACATTTACTCCCGCCTCGCAAAAGATCGTATTCTACTC
CTTGGTCGCCCGGTCGACGATGAGGTTGCAAACTCGCTTGTGGCCCAAAT
GCTTTTCCTTGCATCCGAAGACCCGGATAAGGATATCACTATCTACATCA
ACTCCCCGGGCGGAAGTGTATCCGCTGGCCTTGCTATTTATGACACAATG
CAATTCATTCCCTGCGATGTGCAAACAATTTGCTTTGGCACAGCGGCCAG
TATGGGTGCTTTTCTACTTGGCGCCGGTACAAAAGGAAAGAGGAAGAGCC
TTCCGAATGCCCGTATCATGATTCATCAACCGCTTGGAGGAGCACAAGGA
CAGGCCGCCGATATTGAAATTCAAGCCAAGGAAATCCTCTTTGTCAAGGC
TCTGCTGAACGGATACATGGCTGACTTTACCGGCCAGCCCATGGAAAAGA
TCGAGATGGATACGGACCGTGATTTCTTTATGACCGCAATTGATGCACAA
GAGTACGGTATTATTGATGAAGTTATCAAGACAAAGGTTGATGTTCCGGT
ACTAAAGAGGCCCTCTCTTGTGTAA
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Coding sequence (CDS) from alignment at tig00000007_pilon:639925..640599+

>Gchil7358.t1 ID=Gchil7358.t1|Name=Gchil7358.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=675bp|location=Sequence derived from alignment at tig00000007_pilon:639925..640599+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTCCCAGAACCCAGTCCCCAGCCGCCGGCCGACCCACCAAAGCCTGA
TGCACCCCCTTCTGTACCGCCACCAGTGCCCATGGTTGCCGTTGGAGACA
ACTCACAAATGGACATTTACTCCCGCCTCGCAAAAGATCGTATTCTACTC
CTTGGTCGCCCGGTCGACGATGAGGTTGCAAACTCGCTTGTGGCCCAAAT
GCTTTTCCTTGCATCCGAAGACCCGGATAAGGATATCACTATCTACATCA
ACTCCCCGGGCGGAAGTGTATCCGCTGGCCTTGCTATTTATGACACAATG
CAATTCATTCCCTGCGATGTGCAAACAATTTGCTTTGGCACAGCGGCCAG
TATGGGTGCTTTTCTACTTGGCGCCGGTACAAAAGGAAAGAGGAAGAGCC
TTCCGAATGCCCGTATCATGATTCATCAACCGCTTGGAGGAGCACAAGGA
CAGGCCGCCGATATTGAAATTCAAGCCAAGGAAATCCTCTTTGTCAAGGC
TCTGCTGAACGGATACATGGCTGACTTTACCGGCCAGCCCATGGAAAAGA
TCGAGATGGATACGGACCGTGATTTCTTTATGACCGCAATTGATGCACAA
GAGTACGGTATTATTGATGAAGTTATCAAGACAAAGGTTGATGTTCCGGT
ACTAAAGAGGCCCTCTCTTGTGTAA
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