Gchil8552.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8552.t1
Unique NameGchil8552.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length81
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:246386..246797 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8552Gchil8552Gracilaria chilensis NLEC103_M9 malegenetig00000088_pilon 246386..246797 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8552.t1Gchil8552.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000088_pilon 246386..246797 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8552.t1.start1Gchil8552.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000088_pilon 246386..246388 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8552.t1.CDS1Gchil8552.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000088_pilon 246386..246523 +
Gchil8552.t1.CDS2Gchil8552.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000088_pilon 246693..246797 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8552.t1.exon1Gchil8552.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000088_pilon 246386..246523 +
Gchil8552.t1.exon2Gchil8552.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000088_pilon 246693..246797 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8552.t1.intron1Gchil8552.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000088_pilon 246524..246692 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8552.t1.stop1Gchil8552.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000088_pilon 246795..246797 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8552.t1 ID=Gchil8552.t1|Name=Gchil8552.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=81bp
MALPSKIGAFMVGLAVGSANCFYWLHKDVRTVNDAMMRKIDSIRHQIEEK
DRKAALQLAALESAMPSLSSLASDDANLAS*
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spliced messenger RNA

>Gchil8552.t1 ID=Gchil8552.t1|Name=Gchil8552.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=243bp|location=Sequence derived from alignment at tig00000088_pilon:246386..246797+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCACTCCCCTCTAAGATAGGAGCTTTTATGGTTGGACTTGCTGTTGG
GAGTGCGAACTGTTTCTACTGGCTGCATAAAGATGTTAGAACCGTCAACG
ATGCGATGATGCGAAAGATTGATTCGATCCGGCACCAGATAGAAGAAAAG
GACAGAAAGGCAGCTTTGCAGCTTGCCGCACTTGAGTCTGCTATGCCTAG
TCTTTCAAGCCTGGCATCCGATGACGCGAATCTGGCTTCATGA
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protein sequence of Gchil8552.t1

>Gchil8552.t1 ID=Gchil8552.t1|Name=Gchil8552.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=81bp
MALPSKIGAFMVGLAVGSANCFYWLHKDVRTVNDAMMRKIDSIRHQIEEK
DRKAALQLAALESAMPSLSSLASDDANLAS*
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mRNA from alignment at tig00000088_pilon:246386..246797+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8552.t1 ID=Gchil8552.t1|Name=Gchil8552.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=412bp|location=Sequence derived from alignment at tig00000088_pilon:246386..246797+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCACTCCCCTCTAAGATAGGAGCTTTTATGGTTGGACTTGCTGTTGG
GAGTGCGAACTGTTTCTACTGGCTGCATAAAGATGTTAGAACCGTCAACG
ATGCGATGATGCGAAAGATTGATTCGATCCGGCACCAGGTATGTGTTTTA
TTGTTTCTTGTATTGATCTAGGACGAAACGAAACTTGCAGGACTTTGGTT
CGGCCCATGCGAGAGGTACACACCGCGGTTTCCTTCTAAAGATCATGATT
ATCATACTAGATTGCATCGAACTAACAGACATTCTTCTTGATACTTTTGC
AATGCAGATAGAAGAAAAGGACAGAAAGGCAGCTTTGCAGCTTGCCGCAC
TTGAGTCTGCTATGCCTAGTCTTTCAAGCCTGGCATCCGATGACGCGAAT
CTGGCTTCATGA
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Coding sequence (CDS) from alignment at tig00000088_pilon:246386..246797+

>Gchil8552.t1 ID=Gchil8552.t1|Name=Gchil8552.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=243bp|location=Sequence derived from alignment at tig00000088_pilon:246386..246797+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCACTCCCCTCTAAGATAGGAGCTTTTATGGTTGGACTTGCTGTTGG
GAGTGCGAACTGTTTCTACTGGCTGCATAAAGATGTTAGAACCGTCAACG
ATGCGATGATGCGAAAGATTGATTCGATCCGGCACCAGATAGAAGAAAAG
GACAGAAAGGCAGCTTTGCAGCTTGCCGCACTTGAGTCTGCTATGCCTAG
TCTTTCAAGCCTGGCATCCGATGACGCGAATCTGGCTTCATGA
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