Gchil8558.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8558.t1
Unique NameGchil8558.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length480
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:281279..282718 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog518766.Rmar_1666
Preferred namehemG
PFAMsAmino_oxidase
Max annot lvl976|Bacteroidetes
KEGG rclassRC00885
KEGG koko:K00231
KEGG ReactionR03222,R04178
KEGG Pathwayko00860,ko01100,ko01110,map00860,map01100,map01110
KEGG ModuleM00121
Evalue5.29e-86
EggNOG OGsCOG1232@1|root,COG1232@2|Bacteria,4NH1E@976|Bacteroidetes,1FIR6@1100069|Bacteroidetes Order II. Incertae sedis
EC1.3.3.15,1.3.3.4
DescriptionCatalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8558Gchil8558Gracilaria chilensis NLEC103_M9 malegenetig00000088_pilon 281279..282718 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8558.t1.stop1Gchil8558.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000088_pilon 281279..281281 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8558.t1.CDS1Gchil8558.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000088_pilon 281279..282718 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8558.t1.exon1Gchil8558.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000088_pilon 281279..282718 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8558.t1.start1Gchil8558.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000088_pilon 282716..282718 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8558.t1Gchil8558.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000088_pilon 281279..282718 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8558.t1 ID=Gchil8558.t1|Name=Gchil8558.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=480bp
MRNRRKPRRVAVLGGGPAGLSATYRLASDDTPIEVDLYEESPRFGGAVTS
VKGGGFIYEMGPNSMNAKHQQVADLVYEKLNLSPRVLKRDAAAKNFFIFR
NGQMIPMPRSPIQFCTTPILSWKAKLRILLEPFIPKTQESNADRESVADF
FRRRFGTEFVDYVVDPALAGIYSSKPAGLSMKHALNKVWEVERKKGSVIG
GFLRGGVKTEMDPRFQNYSRKQLLESFSYDSGLQVLTTRLVESIQESNRG
GKLYKNVKVHSINRDSHGAWRINGRGKYDAVISTIPIHALDTVESNVDAI
RKGFNKLAKRVNYAPVSVTVLGFDRSQISSRLDGFGVLLPTKEKMKVLGI
NFTSSNYPSRAEDRNKVYLTVYLGGSRTPEIVSLSSNEIVETATNEVQHV
LGVTGKPFYSEVKNWPKGIPQYHPGYDSALDTMAQVERRAPGLVLGGNYR
DGVGLPDALLSGLKSAERVIEYLQVTMAK*
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spliced messenger RNA

>Gchil8558.t1 ID=Gchil8558.t1|Name=Gchil8558.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1440bp|location=Sequence derived from alignment at tig00000088_pilon:281279..282718- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGAAATAGACGTAAACCTCGTCGTGTTGCTGTTCTTGGCGGAGGTCC
AGCTGGCTTGTCTGCCACTTATCGTCTTGCAAGCGATGACACTCCAATTG
AAGTTGATCTCTACGAGGAATCGCCACGATTTGGAGGCGCAGTCACCTCC
GTCAAGGGCGGCGGTTTTATCTACGAAATGGGCCCTAATTCTATGAATGC
CAAACACCAGCAAGTAGCAGACCTCGTATACGAAAAGCTAAACCTCTCCC
CTCGTGTACTGAAGCGTGATGCCGCCGCGAAGAACTTCTTCATCTTTAGA
AATGGACAGATGATCCCCATGCCGAGGTCCCCAATACAGTTTTGCACCAC
ACCAATTCTTTCTTGGAAGGCAAAGCTTAGAATTCTGCTCGAACCTTTTA
TTCCAAAGACCCAAGAGAGCAATGCAGATCGCGAAAGCGTTGCCGACTTC
TTTCGCAGACGATTTGGAACGGAATTTGTGGATTACGTCGTAGACCCAGC
TTTGGCTGGAATCTACTCTTCAAAACCTGCTGGTTTATCAATGAAGCACG
CTTTGAACAAAGTATGGGAGGTAGAAAGAAAGAAGGGTTCGGTCATCGGA
GGCTTTCTGCGTGGTGGTGTGAAGACGGAAATGGATCCGCGTTTTCAAAA
CTACTCTCGTAAACAGTTGCTTGAGAGTTTCAGTTATGACAGTGGTTTGC
AGGTTCTTACGACACGGCTAGTGGAGAGCATTCAAGAATCGAACAGAGGA
GGGAAGCTGTACAAAAACGTCAAAGTGCATAGCATAAATCGAGACTCGCA
TGGAGCTTGGCGTATTAATGGACGAGGAAAGTATGATGCAGTTATTTCGA
CTATTCCGATTCATGCTCTAGACACAGTTGAATCTAATGTTGACGCCATT
CGCAAAGGTTTCAACAAGCTTGCAAAACGTGTTAATTACGCCCCGGTGTC
TGTTACTGTTCTTGGATTCGATAGGAGCCAAATAAGCTCACGTCTAGACG
GGTTTGGGGTGCTACTGCCTACCAAGGAAAAAATGAAAGTGTTAGGCATC
AATTTCACATCATCCAACTACCCTTCGCGTGCAGAAGACCGGAACAAAGT
ATACCTTACTGTGTACCTTGGTGGAAGTAGAACTCCGGAAATTGTTTCGT
TGTCATCCAATGAAATAGTGGAGACGGCAACGAATGAAGTGCAACATGTG
CTTGGAGTGACGGGAAAGCCGTTTTACTCCGAAGTCAAGAACTGGCCGAA
GGGCATCCCACAGTACCATCCTGGATATGATTCTGCGCTTGACACAATGG
CCCAAGTGGAGAGACGAGCACCTGGTCTCGTATTGGGTGGAAATTATCGA
GATGGAGTAGGATTACCAGACGCATTGCTGTCTGGATTAAAGTCCGCCGA
GCGTGTAATTGAGTATCTCCAGGTGACGATGGCCAAATGA
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protein sequence of Gchil8558.t1

>Gchil8558.t1 ID=Gchil8558.t1|Name=Gchil8558.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=480bp
MRNRRKPRRVAVLGGGPAGLSATYRLASDDTPIEVDLYEESPRFGGAVTS
VKGGGFIYEMGPNSMNAKHQQVADLVYEKLNLSPRVLKRDAAAKNFFIFR
NGQMIPMPRSPIQFCTTPILSWKAKLRILLEPFIPKTQESNADRESVADF
FRRRFGTEFVDYVVDPALAGIYSSKPAGLSMKHALNKVWEVERKKGSVIG
GFLRGGVKTEMDPRFQNYSRKQLLESFSYDSGLQVLTTRLVESIQESNRG
GKLYKNVKVHSINRDSHGAWRINGRGKYDAVISTIPIHALDTVESNVDAI
RKGFNKLAKRVNYAPVSVTVLGFDRSQISSRLDGFGVLLPTKEKMKVLGI
NFTSSNYPSRAEDRNKVYLTVYLGGSRTPEIVSLSSNEIVETATNEVQHV
LGVTGKPFYSEVKNWPKGIPQYHPGYDSALDTMAQVERRAPGLVLGGNYR
DGVGLPDALLSGLKSAERVIEYLQVTMAK*
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mRNA from alignment at tig00000088_pilon:281279..282718-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8558.t1 ID=Gchil8558.t1|Name=Gchil8558.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1440bp|location=Sequence derived from alignment at tig00000088_pilon:281279..282718- (Gracilaria chilensis NLEC103_M9 male)
ATGAGAAATAGACGTAAACCTCGTCGTGTTGCTGTTCTTGGCGGAGGTCC
AGCTGGCTTGTCTGCCACTTATCGTCTTGCAAGCGATGACACTCCAATTG
AAGTTGATCTCTACGAGGAATCGCCACGATTTGGAGGCGCAGTCACCTCC
GTCAAGGGCGGCGGTTTTATCTACGAAATGGGCCCTAATTCTATGAATGC
CAAACACCAGCAAGTAGCAGACCTCGTATACGAAAAGCTAAACCTCTCCC
CTCGTGTACTGAAGCGTGATGCCGCCGCGAAGAACTTCTTCATCTTTAGA
AATGGACAGATGATCCCCATGCCGAGGTCCCCAATACAGTTTTGCACCAC
ACCAATTCTTTCTTGGAAGGCAAAGCTTAGAATTCTGCTCGAACCTTTTA
TTCCAAAGACCCAAGAGAGCAATGCAGATCGCGAAAGCGTTGCCGACTTC
TTTCGCAGACGATTTGGAACGGAATTTGTGGATTACGTCGTAGACCCAGC
TTTGGCTGGAATCTACTCTTCAAAACCTGCTGGTTTATCAATGAAGCACG
CTTTGAACAAAGTATGGGAGGTAGAAAGAAAGAAGGGTTCGGTCATCGGA
GGCTTTCTGCGTGGTGGTGTGAAGACGGAAATGGATCCGCGTTTTCAAAA
CTACTCTCGTAAACAGTTGCTTGAGAGTTTCAGTTATGACAGTGGTTTGC
AGGTTCTTACGACACGGCTAGTGGAGAGCATTCAAGAATCGAACAGAGGA
GGGAAGCTGTACAAAAACGTCAAAGTGCATAGCATAAATCGAGACTCGCA
TGGAGCTTGGCGTATTAATGGACGAGGAAAGTATGATGCAGTTATTTCGA
CTATTCCGATTCATGCTCTAGACACAGTTGAATCTAATGTTGACGCCATT
CGCAAAGGTTTCAACAAGCTTGCAAAACGTGTTAATTACGCCCCGGTGTC
TGTTACTGTTCTTGGATTCGATAGGAGCCAAATAAGCTCACGTCTAGACG
GGTTTGGGGTGCTACTGCCTACCAAGGAAAAAATGAAAGTGTTAGGCATC
AATTTCACATCATCCAACTACCCTTCGCGTGCAGAAGACCGGAACAAAGT
ATACCTTACTGTGTACCTTGGTGGAAGTAGAACTCCGGAAATTGTTTCGT
TGTCATCCAATGAAATAGTGGAGACGGCAACGAATGAAGTGCAACATGTG
CTTGGAGTGACGGGAAAGCCGTTTTACTCCGAAGTCAAGAACTGGCCGAA
GGGCATCCCACAGTACCATCCTGGATATGATTCTGCGCTTGACACAATGG
CCCAAGTGGAGAGACGAGCACCTGGTCTCGTATTGGGTGGAAATTATCGA
GATGGAGTAGGATTACCAGACGCATTGCTGTCTGGATTAAAGTCCGCCGA
GCGTGTAATTGAGTATCTCCAGGTGACGATGGCCAAATGA
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Coding sequence (CDS) from alignment at tig00000088_pilon:281279..282718-

>Gchil8558.t1 ID=Gchil8558.t1|Name=Gchil8558.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1440bp|location=Sequence derived from alignment at tig00000088_pilon:281279..282718- (Gracilaria chilensis NLEC103_M9 male)
ATGAGAAATAGACGTAAACCTCGTCGTGTTGCTGTTCTTGGCGGAGGTCC
AGCTGGCTTGTCTGCCACTTATCGTCTTGCAAGCGATGACACTCCAATTG
AAGTTGATCTCTACGAGGAATCGCCACGATTTGGAGGCGCAGTCACCTCC
GTCAAGGGCGGCGGTTTTATCTACGAAATGGGCCCTAATTCTATGAATGC
CAAACACCAGCAAGTAGCAGACCTCGTATACGAAAAGCTAAACCTCTCCC
CTCGTGTACTGAAGCGTGATGCCGCCGCGAAGAACTTCTTCATCTTTAGA
AATGGACAGATGATCCCCATGCCGAGGTCCCCAATACAGTTTTGCACCAC
ACCAATTCTTTCTTGGAAGGCAAAGCTTAGAATTCTGCTCGAACCTTTTA
TTCCAAAGACCCAAGAGAGCAATGCAGATCGCGAAAGCGTTGCCGACTTC
TTTCGCAGACGATTTGGAACGGAATTTGTGGATTACGTCGTAGACCCAGC
TTTGGCTGGAATCTACTCTTCAAAACCTGCTGGTTTATCAATGAAGCACG
CTTTGAACAAAGTATGGGAGGTAGAAAGAAAGAAGGGTTCGGTCATCGGA
GGCTTTCTGCGTGGTGGTGTGAAGACGGAAATGGATCCGCGTTTTCAAAA
CTACTCTCGTAAACAGTTGCTTGAGAGTTTCAGTTATGACAGTGGTTTGC
AGGTTCTTACGACACGGCTAGTGGAGAGCATTCAAGAATCGAACAGAGGA
GGGAAGCTGTACAAAAACGTCAAAGTGCATAGCATAAATCGAGACTCGCA
TGGAGCTTGGCGTATTAATGGACGAGGAAAGTATGATGCAGTTATTTCGA
CTATTCCGATTCATGCTCTAGACACAGTTGAATCTAATGTTGACGCCATT
CGCAAAGGTTTCAACAAGCTTGCAAAACGTGTTAATTACGCCCCGGTGTC
TGTTACTGTTCTTGGATTCGATAGGAGCCAAATAAGCTCACGTCTAGACG
GGTTTGGGGTGCTACTGCCTACCAAGGAAAAAATGAAAGTGTTAGGCATC
AATTTCACATCATCCAACTACCCTTCGCGTGCAGAAGACCGGAACAAAGT
ATACCTTACTGTGTACCTTGGTGGAAGTAGAACTCCGGAAATTGTTTCGT
TGTCATCCAATGAAATAGTGGAGACGGCAACGAATGAAGTGCAACATGTG
CTTGGAGTGACGGGAAAGCCGTTTTACTCCGAAGTCAAGAACTGGCCGAA
GGGCATCCCACAGTACCATCCTGGATATGATTCTGCGCTTGACACAATGG
CCCAAGTGGAGAGACGAGCACCTGGTCTCGTATTGGGTGGAAATTATCGA
GATGGAGTAGGATTACCAGACGCATTGCTGTCTGGATTAAAGTCCGCCGA
GCGTGTAATTGAGTATCTCCAGGTGACGATGGCCAAATGA
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