Gchil3989.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3989.t1
Unique NameGchil3989.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length317
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:101840..102790 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog325452.fgenesh_scip_prom.46568.7481
PFAMsPeptidase_C12
Max annot lvl4776|Peronosporales
KEGG koko:K05610
Evalue7.71e-86
EggNOG OGsKOG2778@1|root,KOG2778@2759|Eukaryota,3QA2M@4776|Peronosporales
EC3.4.19.12
DescriptionUbiquitin carboxyl-terminal hydrolase, family 1
COG categoryO
BRITEko00000,ko01000,ko01002,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3989Gchil3989Gracilaria chilensis NLEC103_M9 malegenetig00000081_pilon 101840..102790 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3989.t1.stop1Gchil3989.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000081_pilon 101840..101842 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3989.t1.CDS1Gchil3989.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000081_pilon 101840..102790 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3989.t1.exon1Gchil3989.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000081_pilon 101840..102790 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3989.t1.start1Gchil3989.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000081_pilon 102788..102790 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3989.t1Gchil3989.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000081_pilon 101840..102790 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3989.t1 ID=Gchil3989.t1|Name=Gchil3989.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=317bp
MSDLGWCTIESDPGVFTELLREIGVRNVQVEELYALDKHLISQFGQVYGL
VFLFKYRADERSIARNRPGKLFNPAPESLFFANQTITNACATQALLSIVM
NTSCLSIGEELSRFKDFSNGMDSMTKGMVVSNSEVIRAAHNSFAPQHQFV
VEDSQTMEKEDPFHFVAYLPHDGKVFELDGLQEGPREHGAYDESTDWIDV
VTPIITQRIEEYNGSEIRFNIMMVVEDPRERLQGEVEKLREHTDANSGRI
ASIEAELAQQTEKHDRWHKENMRRRWNFVPFIVNLFKAVAEAGQAEKLIA
DATKKKEKVLEDMMEK*
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spliced messenger RNA

>Gchil3989.t1 ID=Gchil3989.t1|Name=Gchil3989.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=951bp|location=Sequence derived from alignment at tig00000081_pilon:101840..102790- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGATCTCGGATGGTGCACGATAGAATCGGATCCAGGTGTGTTCAC
GGAACTACTGCGTGAAATCGGAGTGAGGAACGTACAGGTAGAGGAGCTTT
ATGCATTGGATAAGCACTTGATTTCTCAGTTTGGCCAAGTGTATGGACTC
GTATTCTTATTCAAGTATCGAGCGGACGAGCGCAGCATTGCTCGAAACCG
TCCAGGAAAGCTTTTTAATCCTGCCCCTGAATCACTGTTCTTCGCAAATC
AAACGATCACAAACGCATGTGCAACACAAGCACTTCTTTCCATCGTGATG
AATACGTCCTGCCTTTCAATAGGAGAAGAGCTGTCCAGATTCAAAGACTT
TTCAAATGGTATGGACTCAATGACTAAAGGAATGGTAGTTTCGAATTCAG
AAGTGATCCGCGCTGCACACAATTCCTTTGCACCGCAACATCAGTTTGTA
GTAGAAGACAGCCAGACTATGGAGAAAGAGGACCCCTTCCACTTTGTAGC
GTACCTTCCACACGATGGGAAAGTGTTCGAACTGGACGGATTACAAGAGG
GACCGCGAGAACATGGAGCTTATGATGAAAGTACTGATTGGATAGATGTT
GTCACACCCATCATTACTCAAAGAATAGAGGAGTATAATGGAAGTGAGAT
TCGGTTCAACATTATGATGGTTGTGGAGGATCCTCGAGAGCGACTCCAAG
GTGAGGTGGAAAAGCTACGAGAACACACCGATGCCAACAGTGGAAGAATT
GCGTCCATAGAGGCAGAATTGGCACAGCAAACGGAGAAACACGATAGATG
GCACAAAGAAAATATGCGAAGACGGTGGAATTTTGTCCCGTTCATCGTCA
ATCTGTTCAAGGCTGTTGCCGAAGCAGGGCAAGCGGAAAAGCTAATCGCG
GATGCTACGAAGAAGAAGGAGAAAGTCCTTGAAGACATGATGGAGAAATA
A
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protein sequence of Gchil3989.t1

>Gchil3989.t1 ID=Gchil3989.t1|Name=Gchil3989.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=317bp
MSDLGWCTIESDPGVFTELLREIGVRNVQVEELYALDKHLISQFGQVYGL
VFLFKYRADERSIARNRPGKLFNPAPESLFFANQTITNACATQALLSIVM
NTSCLSIGEELSRFKDFSNGMDSMTKGMVVSNSEVIRAAHNSFAPQHQFV
VEDSQTMEKEDPFHFVAYLPHDGKVFELDGLQEGPREHGAYDESTDWIDV
VTPIITQRIEEYNGSEIRFNIMMVVEDPRERLQGEVEKLREHTDANSGRI
ASIEAELAQQTEKHDRWHKENMRRRWNFVPFIVNLFKAVAEAGQAEKLIA
DATKKKEKVLEDMMEK*
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mRNA from alignment at tig00000081_pilon:101840..102790-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3989.t1 ID=Gchil3989.t1|Name=Gchil3989.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=951bp|location=Sequence derived from alignment at tig00000081_pilon:101840..102790- (Gracilaria chilensis NLEC103_M9 male)
ATGTCCGATCTCGGATGGTGCACGATAGAATCGGATCCAGGTGTGTTCAC
GGAACTACTGCGTGAAATCGGAGTGAGGAACGTACAGGTAGAGGAGCTTT
ATGCATTGGATAAGCACTTGATTTCTCAGTTTGGCCAAGTGTATGGACTC
GTATTCTTATTCAAGTATCGAGCGGACGAGCGCAGCATTGCTCGAAACCG
TCCAGGAAAGCTTTTTAATCCTGCCCCTGAATCACTGTTCTTCGCAAATC
AAACGATCACAAACGCATGTGCAACACAAGCACTTCTTTCCATCGTGATG
AATACGTCCTGCCTTTCAATAGGAGAAGAGCTGTCCAGATTCAAAGACTT
TTCAAATGGTATGGACTCAATGACTAAAGGAATGGTAGTTTCGAATTCAG
AAGTGATCCGCGCTGCACACAATTCCTTTGCACCGCAACATCAGTTTGTA
GTAGAAGACAGCCAGACTATGGAGAAAGAGGACCCCTTCCACTTTGTAGC
GTACCTTCCACACGATGGGAAAGTGTTCGAACTGGACGGATTACAAGAGG
GACCGCGAGAACATGGAGCTTATGATGAAAGTACTGATTGGATAGATGTT
GTCACACCCATCATTACTCAAAGAATAGAGGAGTATAATGGAAGTGAGAT
TCGGTTCAACATTATGATGGTTGTGGAGGATCCTCGAGAGCGACTCCAAG
GTGAGGTGGAAAAGCTACGAGAACACACCGATGCCAACAGTGGAAGAATT
GCGTCCATAGAGGCAGAATTGGCACAGCAAACGGAGAAACACGATAGATG
GCACAAAGAAAATATGCGAAGACGGTGGAATTTTGTCCCGTTCATCGTCA
ATCTGTTCAAGGCTGTTGCCGAAGCAGGGCAAGCGGAAAAGCTAATCGCG
GATGCTACGAAGAAGAAGGAGAAAGTCCTTGAAGACATGATGGAGAAATA
A
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Coding sequence (CDS) from alignment at tig00000081_pilon:101840..102790-

>Gchil3989.t1 ID=Gchil3989.t1|Name=Gchil3989.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=951bp|location=Sequence derived from alignment at tig00000081_pilon:101840..102790- (Gracilaria chilensis NLEC103_M9 male)
ATGTCCGATCTCGGATGGTGCACGATAGAATCGGATCCAGGTGTGTTCAC
GGAACTACTGCGTGAAATCGGAGTGAGGAACGTACAGGTAGAGGAGCTTT
ATGCATTGGATAAGCACTTGATTTCTCAGTTTGGCCAAGTGTATGGACTC
GTATTCTTATTCAAGTATCGAGCGGACGAGCGCAGCATTGCTCGAAACCG
TCCAGGAAAGCTTTTTAATCCTGCCCCTGAATCACTGTTCTTCGCAAATC
AAACGATCACAAACGCATGTGCAACACAAGCACTTCTTTCCATCGTGATG
AATACGTCCTGCCTTTCAATAGGAGAAGAGCTGTCCAGATTCAAAGACTT
TTCAAATGGTATGGACTCAATGACTAAAGGAATGGTAGTTTCGAATTCAG
AAGTGATCCGCGCTGCACACAATTCCTTTGCACCGCAACATCAGTTTGTA
GTAGAAGACAGCCAGACTATGGAGAAAGAGGACCCCTTCCACTTTGTAGC
GTACCTTCCACACGATGGGAAAGTGTTCGAACTGGACGGATTACAAGAGG
GACCGCGAGAACATGGAGCTTATGATGAAAGTACTGATTGGATAGATGTT
GTCACACCCATCATTACTCAAAGAATAGAGGAGTATAATGGAAGTGAGAT
TCGGTTCAACATTATGATGGTTGTGGAGGATCCTCGAGAGCGACTCCAAG
GTGAGGTGGAAAAGCTACGAGAACACACCGATGCCAACAGTGGAAGAATT
GCGTCCATAGAGGCAGAATTGGCACAGCAAACGGAGAAACACGATAGATG
GCACAAAGAAAATATGCGAAGACGGTGGAATTTTGTCCCGTTCATCGTCA
ATCTGTTCAAGGCTGTTGCCGAAGCAGGGCAAGCGGAAAAGCTAATCGCG
GATGCTACGAAGAAGAAGGAGAAAGTCCTTGAAGACATGATGGAGAAATA
A
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