Gchil3993.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3993.t1
Unique NameGchil3993.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length270
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:200331..201140 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3993Gchil3993Gracilaria chilensis NLEC103_M9 malegenetig00000081_pilon 200331..201140 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3993.t1.stop1Gchil3993.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000081_pilon 200331..200333 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3993.t1.CDS1Gchil3993.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000081_pilon 200331..201140 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3993.t1.exon1Gchil3993.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000081_pilon 200331..201140 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3993.t1.start1Gchil3993.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000081_pilon 201138..201140 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3993.t1Gchil3993.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000081_pilon 200331..201140 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3993.t1 ID=Gchil3993.t1|Name=Gchil3993.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=270bp
MEKFYTLCSGFVESRTAHSTSPGSSDTGDDIHIVDVVKGTGSARGVDAAA
MIVTGSIKEVGGEQSIRQFVEYAQTIIPETAYYVSVSTLRLFPTLTLSFG
DILLMLESYTELMRRERQGIYRARQQCWVAAHFDRSDATRSDERWSASDS
SFDVYYGCIDEIWEAEVSYLTPAEQLLYCKTFKLSRINWWYGIRLDKASQ
LPFTFLLGRNRRSTLRDTLRSLKYFACIKRLIGYTDHEGRRMFYDPVFDS
ELAGNRSKGFLRRVLGEMM*
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spliced messenger RNA

>Gchil3993.t1 ID=Gchil3993.t1|Name=Gchil3993.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=810bp|location=Sequence derived from alignment at tig00000081_pilon:200331..201140- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGAAATTTTATACTCTTTGCAGTGGCTTCGTAGAATCGAGAACAGC
GCATTCAACTTCTCCAGGATCCTCCGATACAGGTGACGACATTCACATAG
TGGATGTGGTGAAAGGCACAGGTAGCGCTAGGGGTGTCGATGCAGCTGCC
ATGATAGTCACTGGCTCAATTAAGGAAGTGGGTGGTGAACAAAGCATTAG
ACAATTTGTGGAATATGCGCAGACTATCATTCCGGAAACGGCGTATTATG
TCAGTGTTTCAACCCTACGACTATTCCCTACATTGACATTGTCCTTCGGG
GATATTTTGCTTATGCTGGAGAGCTACACAGAGCTCATGCGACGGGAAAG
GCAGGGGATTTATCGTGCAAGGCAGCAATGCTGGGTAGCCGCTCATTTCG
ACAGAAGTGACGCGACACGCAGCGATGAGCGGTGGAGTGCATCTGATTCT
TCCTTCGACGTTTATTATGGCTGCATAGACGAGATCTGGGAAGCAGAAGT
ATCTTATCTAACACCCGCAGAGCAGCTATTGTATTGCAAGACTTTCAAAC
TTTCCCGCATCAATTGGTGGTATGGCATCCGTCTGGACAAAGCTTCGCAG
CTTCCGTTTACCTTCCTACTTGGCCGAAACCGTCGAAGCACACTGCGCGA
CACTCTTCGGAGTTTGAAGTACTTTGCGTGCATCAAGAGGCTCATAGGGT
ATACGGATCATGAAGGACGTCGAATGTTTTATGATCCGGTTTTCGATTCG
GAACTCGCTGGCAACCGATCCAAAGGGTTTCTGAGAAGAGTCTTGGGAGA
GATGATGTGA
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protein sequence of Gchil3993.t1

>Gchil3993.t1 ID=Gchil3993.t1|Name=Gchil3993.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=270bp
MEKFYTLCSGFVESRTAHSTSPGSSDTGDDIHIVDVVKGTGSARGVDAAA
MIVTGSIKEVGGEQSIRQFVEYAQTIIPETAYYVSVSTLRLFPTLTLSFG
DILLMLESYTELMRRERQGIYRARQQCWVAAHFDRSDATRSDERWSASDS
SFDVYYGCIDEIWEAEVSYLTPAEQLLYCKTFKLSRINWWYGIRLDKASQ
LPFTFLLGRNRRSTLRDTLRSLKYFACIKRLIGYTDHEGRRMFYDPVFDS
ELAGNRSKGFLRRVLGEMM*
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mRNA from alignment at tig00000081_pilon:200331..201140-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3993.t1 ID=Gchil3993.t1|Name=Gchil3993.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=810bp|location=Sequence derived from alignment at tig00000081_pilon:200331..201140- (Gracilaria chilensis NLEC103_M9 male)
ATGGAGAAATTTTATACTCTTTGCAGTGGCTTCGTAGAATCGAGAACAGC
GCATTCAACTTCTCCAGGATCCTCCGATACAGGTGACGACATTCACATAG
TGGATGTGGTGAAAGGCACAGGTAGCGCTAGGGGTGTCGATGCAGCTGCC
ATGATAGTCACTGGCTCAATTAAGGAAGTGGGTGGTGAACAAAGCATTAG
ACAATTTGTGGAATATGCGCAGACTATCATTCCGGAAACGGCGTATTATG
TCAGTGTTTCAACCCTACGACTATTCCCTACATTGACATTGTCCTTCGGG
GATATTTTGCTTATGCTGGAGAGCTACACAGAGCTCATGCGACGGGAAAG
GCAGGGGATTTATCGTGCAAGGCAGCAATGCTGGGTAGCCGCTCATTTCG
ACAGAAGTGACGCGACACGCAGCGATGAGCGGTGGAGTGCATCTGATTCT
TCCTTCGACGTTTATTATGGCTGCATAGACGAGATCTGGGAAGCAGAAGT
ATCTTATCTAACACCCGCAGAGCAGCTATTGTATTGCAAGACTTTCAAAC
TTTCCCGCATCAATTGGTGGTATGGCATCCGTCTGGACAAAGCTTCGCAG
CTTCCGTTTACCTTCCTACTTGGCCGAAACCGTCGAAGCACACTGCGCGA
CACTCTTCGGAGTTTGAAGTACTTTGCGTGCATCAAGAGGCTCATAGGGT
ATACGGATCATGAAGGACGTCGAATGTTTTATGATCCGGTTTTCGATTCG
GAACTCGCTGGCAACCGATCCAAAGGGTTTCTGAGAAGAGTCTTGGGAGA
GATGATGTGA
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Coding sequence (CDS) from alignment at tig00000081_pilon:200331..201140-

>Gchil3993.t1 ID=Gchil3993.t1|Name=Gchil3993.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=810bp|location=Sequence derived from alignment at tig00000081_pilon:200331..201140- (Gracilaria chilensis NLEC103_M9 male)
ATGGAGAAATTTTATACTCTTTGCAGTGGCTTCGTAGAATCGAGAACAGC
GCATTCAACTTCTCCAGGATCCTCCGATACAGGTGACGACATTCACATAG
TGGATGTGGTGAAAGGCACAGGTAGCGCTAGGGGTGTCGATGCAGCTGCC
ATGATAGTCACTGGCTCAATTAAGGAAGTGGGTGGTGAACAAAGCATTAG
ACAATTTGTGGAATATGCGCAGACTATCATTCCGGAAACGGCGTATTATG
TCAGTGTTTCAACCCTACGACTATTCCCTACATTGACATTGTCCTTCGGG
GATATTTTGCTTATGCTGGAGAGCTACACAGAGCTCATGCGACGGGAAAG
GCAGGGGATTTATCGTGCAAGGCAGCAATGCTGGGTAGCCGCTCATTTCG
ACAGAAGTGACGCGACACGCAGCGATGAGCGGTGGAGTGCATCTGATTCT
TCCTTCGACGTTTATTATGGCTGCATAGACGAGATCTGGGAAGCAGAAGT
ATCTTATCTAACACCCGCAGAGCAGCTATTGTATTGCAAGACTTTCAAAC
TTTCCCGCATCAATTGGTGGTATGGCATCCGTCTGGACAAAGCTTCGCAG
CTTCCGTTTACCTTCCTACTTGGCCGAAACCGTCGAAGCACACTGCGCGA
CACTCTTCGGAGTTTGAAGTACTTTGCGTGCATCAAGAGGCTCATAGGGT
ATACGGATCATGAAGGACGTCGAATGTTTTATGATCCGGTTTTCGATTCG
GAACTCGCTGGCAACCGATCCAAAGGGTTTCTGAGAAGAGTCTTGGGAGA
GATGATGTGA
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