Gchil3997.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3997.t1
Unique NameGchil3997.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length280
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:256521..257458 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3997Gchil3997Gracilaria chilensis NLEC103_M9 malegenetig00000081_pilon 256521..257458 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3997.t1Gchil3997.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000081_pilon 256521..257458 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3997.t1.start1Gchil3997.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000081_pilon 256521..256523 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3997.t1.CDS1Gchil3997.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000081_pilon 256521..257327 +
Gchil3997.t1.CDS2Gchil3997.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000081_pilon 257426..257458 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3997.t1.exon1Gchil3997.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000081_pilon 256521..257327 +
Gchil3997.t1.exon2Gchil3997.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000081_pilon 257426..257458 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3997.t1.intron1Gchil3997.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000081_pilon 257328..257425 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3997.t1.stop1Gchil3997.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000081_pilon 257456..257458 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3997.t1 ID=Gchil3997.t1|Name=Gchil3997.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=280bp
MSESSGVLSKAQATARYNRLVRNAKNVHISTQASLPLLNAAQTLLDVYPV
TGHGSTPASLPNAEQVKEYLQSLLPPSTKIYTETFFKEPLFAAIFLFDLA
KLYGFSDITENFIENLNLSAQDRSDKSIETHIWLAQFLNLSPKDIIAVVE
MYKRTRGSPNVLIRSRSNRTSDHLEVIPDPASDTMARPVNTPMDTDRRPQ
GQLRTDNYTIRPDLSPRTNLQDADDNSVARSVAPAVPLNQSRTPNMAVRH
SMGHAGQPPPMDDTRNASYVVNKSEGRLL*
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spliced messenger RNA

>Gchil3997.t1 ID=Gchil3997.t1|Name=Gchil3997.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=840bp|location=Sequence derived from alignment at tig00000081_pilon:256521..257458+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAGAATCAAGTGGTGTTCTCAGTAAAGCGCAGGCTACGGCTCGTTA
CAATCGCCTGGTGAGAAACGCAAAGAATGTACACATCAGCACCCAAGCAA
GCCTACCTCTGCTTAATGCGGCACAGACTTTGCTTGATGTTTATCCAGTT
ACTGGACACGGAAGCACACCAGCTTCGCTACCGAACGCTGAGCAAGTGAA
AGAATATCTGCAGAGTCTATTGCCTCCTTCCACGAAGATATACACCGAGA
CATTCTTCAAGGAACCGCTTTTTGCAGCGATATTTCTTTTCGATTTGGCC
AAGTTGTATGGATTTTCAGACATTACTGAAAACTTCATCGAGAATCTCAA
TCTTTCTGCTCAAGATCGATCTGACAAGAGTATCGAAACGCACATATGGC
TCGCACAGTTCCTCAATCTCTCACCAAAAGACATTATTGCAGTCGTAGAG
ATGTATAAACGTACTCGAGGATCTCCCAATGTGCTAATCCGCTCTCGATC
GAATCGCACAAGCGATCATTTAGAGGTCATACCAGACCCTGCTTCGGACA
CGATGGCTCGTCCGGTCAATACACCGATGGATACCGATCGAAGACCCCAG
GGGCAACTTCGGACGGATAATTACACAATTCGACCAGACTTGAGTCCCCG
CACGAACCTCCAAGACGCAGATGATAATTCAGTAGCACGATCCGTTGCGC
CAGCAGTTCCACTCAACCAGTCTCGGACTCCAAATATGGCTGTTCGTCAC
AGCATGGGTCATGCAGGTCAACCTCCTCCCATGGATGATACACGAAACGC
TTCTTACGTTGTCAACAAGTCAGAAGGCCGATtactttga
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protein sequence of Gchil3997.t1

>Gchil3997.t1 ID=Gchil3997.t1|Name=Gchil3997.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=280bp
MSESSGVLSKAQATARYNRLVRNAKNVHISTQASLPLLNAAQTLLDVYPV
TGHGSTPASLPNAEQVKEYLQSLLPPSTKIYTETFFKEPLFAAIFLFDLA
KLYGFSDITENFIENLNLSAQDRSDKSIETHIWLAQFLNLSPKDIIAVVE
MYKRTRGSPNVLIRSRSNRTSDHLEVIPDPASDTMARPVNTPMDTDRRPQ
GQLRTDNYTIRPDLSPRTNLQDADDNSVARSVAPAVPLNQSRTPNMAVRH
SMGHAGQPPPMDDTRNASYVVNKSEGRLL*
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mRNA from alignment at tig00000081_pilon:256521..257458+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3997.t1 ID=Gchil3997.t1|Name=Gchil3997.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=938bp|location=Sequence derived from alignment at tig00000081_pilon:256521..257458+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCAGAATCAAGTGGTGTTCTCAGTAAAGCGCAGGCTACGGCTCGTTA
CAATCGCCTGGTGAGAAACGCAAAGAATGTACACATCAGCACCCAAGCAA
GCCTACCTCTGCTTAATGCGGCACAGACTTTGCTTGATGTTTATCCAGTT
ACTGGACACGGAAGCACACCAGCTTCGCTACCGAACGCTGAGCAAGTGAA
AGAATATCTGCAGAGTCTATTGCCTCCTTCCACGAAGATATACACCGAGA
CATTCTTCAAGGAACCGCTTTTTGCAGCGATATTTCTTTTCGATTTGGCC
AAGTTGTATGGATTTTCAGACATTACTGAAAACTTCATCGAGAATCTCAA
TCTTTCTGCTCAAGATCGATCTGACAAGAGTATCGAAACGCACATATGGC
TCGCACAGTTCCTCAATCTCTCACCAAAAGACATTATTGCAGTCGTAGAG
ATGTATAAACGTACTCGAGGATCTCCCAATGTGCTAATCCGCTCTCGATC
GAATCGCACAAGCGATCATTTAGAGGTCATACCAGACCCTGCTTCGGACA
CGATGGCTCGTCCGGTCAATACACCGATGGATACCGATCGAAGACCCCAG
GGGCAACTTCGGACGGATAATTACACAATTCGACCAGACTTGAGTCCCCG
CACGAACCTCCAAGACGCAGATGATAATTCAGTAGCACGATCCGTTGCGC
CAGCAGTTCCACTCAACCAGTCTCGGACTCCAAATATGGCTGTTCGTCAC
AGCATGGGTCATGCAGGTCAACCTCCTCCCATGGATGATACACGAAACGC
TTCTTACGTATGTCAGTACTTCAAGGACAGAATGTACGATGGAGACATAA
CTCAATCGGTTGAGCATGTCATTCGTGACTATGACGCCTGTGCACAACAA
CACAGGTTGTCAACAAGTCAGAAGGCCGATtactttga
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Coding sequence (CDS) from alignment at tig00000081_pilon:256521..257458+

>Gchil3997.t1 ID=Gchil3997.t1|Name=Gchil3997.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=840bp|location=Sequence derived from alignment at tig00000081_pilon:256521..257458+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCAGAATCAAGTGGTGTTCTCAGTAAAGCGCAGGCTACGGCTCGTTA
CAATCGCCTGGTGAGAAACGCAAAGAATGTACACATCAGCACCCAAGCAA
GCCTACCTCTGCTTAATGCGGCACAGACTTTGCTTGATGTTTATCCAGTT
ACTGGACACGGAAGCACACCAGCTTCGCTACCGAACGCTGAGCAAGTGAA
AGAATATCTGCAGAGTCTATTGCCTCCTTCCACGAAGATATACACCGAGA
CATTCTTCAAGGAACCGCTTTTTGCAGCGATATTTCTTTTCGATTTGGCC
AAGTTGTATGGATTTTCAGACATTACTGAAAACTTCATCGAGAATCTCAA
TCTTTCTGCTCAAGATCGATCTGACAAGAGTATCGAAACGCACATATGGC
TCGCACAGTTCCTCAATCTCTCACCAAAAGACATTATTGCAGTCGTAGAG
ATGTATAAACGTACTCGAGGATCTCCCAATGTGCTAATCCGCTCTCGATC
GAATCGCACAAGCGATCATTTAGAGGTCATACCAGACCCTGCTTCGGACA
CGATGGCTCGTCCGGTCAATACACCGATGGATACCGATCGAAGACCCCAG
GGGCAACTTCGGACGGATAATTACACAATTCGACCAGACTTGAGTCCCCG
CACGAACCTCCAAGACGCAGATGATAATTCAGTAGCACGATCCGTTGCGC
CAGCAGTTCCACTCAACCAGTCTCGGACTCCAAATATGGCTGTTCGTCAC
AGCATGGGTCATGCAGGTCAACCTCCTCCCATGGATGATACACGAAACGC
TTCTTACGTTGTCAACAAGTCAGAAGGCCGATtactttga
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