Gchil4000.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil4000.t1
Unique NameGchil4000.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length140
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:288887..289306 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog110662.Syncc9605_2080
PFAMsDUF448
Max annot lvl1117|Cyanobacteria
KEGG koko:K07742
Evalue2.61e-10
EggNOG OGsCOG2740@1|root,COG2740@2|Bacteria,1G82M@1117|Cyanobacteria,1H1AW@1129|Synechococcus
Descriptionnucleic-acid-binding protein implicated in transcription termination
COG categoryK
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil4000Gchil4000Gracilaria chilensis NLEC103_M9 malegenetig00000081_pilon 288887..289306 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4000.t1.start1Gchil4000.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000081_pilon 288887..288889 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4000.t1.CDS1Gchil4000.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000081_pilon 288887..289306 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4000.t1.exon1Gchil4000.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000081_pilon 288887..289306 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4000.t1.stop1Gchil4000.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000081_pilon 289304..289306 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil4000.t1Gchil4000.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000081_pilon 288887..289306 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil4000.t1 ID=Gchil4000.t1|Name=Gchil4000.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=140bp
MAFMSPFCRIHGPRQGKDVRMCVVARERLPRSLLWQIVRAKGADGSYVVK
VGRGEGRSAYVSKDYNSVNECLRRKRLSKALRCPVPKNVGEELRTIARKW
DTMPLCERGLVFAEVYGAEGVCAAVDEIQGPCALNLDPF*
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spliced messenger RNA

>Gchil4000.t1 ID=Gchil4000.t1|Name=Gchil4000.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=420bp|location=Sequence derived from alignment at tig00000081_pilon:288887..289306+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTTCATGTCTCCATTCTGCCGGATTCACGGTCCCAGGCAAGGGAA
AGATGTGCGCATGTGCGTAGTTGCTCGAGAGCGTCTGCCCCGTAGTTTAC
TCTGGCAAATCGTTCGCGCCAAAGGTGCAGACGGTAGCTACGTTGTGAAA
GTAGGAAGAGGAGAAGGGAGATCGGCTTATGTATCCAAAGATTACAATAG
TGTGAACGAATGTTTGAGACGAAAACGACTTTCAAAGGCGTTGCGCTGTC
CAGTTCCCAAGAACGTTGGCGAGGAGCTTCGAACGATTGCAAGAAAATGG
GATACAATGCCGCTGTGTGAACGGGGTCTTGTCTTCGCGGAGGTGTACGG
GGCCGAAGGTGTTTGTGCGGCTGTCGATGAGATACAAGGACCTTGTGCAC
TAAATCTAGATCCTTTTTAA
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protein sequence of Gchil4000.t1

>Gchil4000.t1 ID=Gchil4000.t1|Name=Gchil4000.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=140bp
MAFMSPFCRIHGPRQGKDVRMCVVARERLPRSLLWQIVRAKGADGSYVVK
VGRGEGRSAYVSKDYNSVNECLRRKRLSKALRCPVPKNVGEELRTIARKW
DTMPLCERGLVFAEVYGAEGVCAAVDEIQGPCALNLDPF*
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mRNA from alignment at tig00000081_pilon:288887..289306+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil4000.t1 ID=Gchil4000.t1|Name=Gchil4000.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=420bp|location=Sequence derived from alignment at tig00000081_pilon:288887..289306+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTTTCATGTCTCCATTCTGCCGGATTCACGGTCCCAGGCAAGGGAA
AGATGTGCGCATGTGCGTAGTTGCTCGAGAGCGTCTGCCCCGTAGTTTAC
TCTGGCAAATCGTTCGCGCCAAAGGTGCAGACGGTAGCTACGTTGTGAAA
GTAGGAAGAGGAGAAGGGAGATCGGCTTATGTATCCAAAGATTACAATAG
TGTGAACGAATGTTTGAGACGAAAACGACTTTCAAAGGCGTTGCGCTGTC
CAGTTCCCAAGAACGTTGGCGAGGAGCTTCGAACGATTGCAAGAAAATGG
GATACAATGCCGCTGTGTGAACGGGGTCTTGTCTTCGCGGAGGTGTACGG
GGCCGAAGGTGTTTGTGCGGCTGTCGATGAGATACAAGGACCTTGTGCAC
TAAATCTAGATCCTTTTTAA
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Coding sequence (CDS) from alignment at tig00000081_pilon:288887..289306+

>Gchil4000.t1 ID=Gchil4000.t1|Name=Gchil4000.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=420bp|location=Sequence derived from alignment at tig00000081_pilon:288887..289306+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTTTCATGTCTCCATTCTGCCGGATTCACGGTCCCAGGCAAGGGAA
AGATGTGCGCATGTGCGTAGTTGCTCGAGAGCGTCTGCCCCGTAGTTTAC
TCTGGCAAATCGTTCGCGCCAAAGGTGCAGACGGTAGCTACGTTGTGAAA
GTAGGAAGAGGAGAAGGGAGATCGGCTTATGTATCCAAAGATTACAATAG
TGTGAACGAATGTTTGAGACGAAAACGACTTTCAAAGGCGTTGCGCTGTC
CAGTTCCCAAGAACGTTGGCGAGGAGCTTCGAACGATTGCAAGAAAATGG
GATACAATGCCGCTGTGTGAACGGGGTCTTGTCTTCGCGGAGGTGTACGG
GGCCGAAGGTGTTTGTGCGGCTGTCGATGAGATACAAGGACCTTGTGCAC
TAAATCTAGATCCTTTTTAA
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