Gchil7545.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7545.t1
Unique NameGchil7545.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length119
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:1814464..1814820 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703529.1
PFAMsClpS
Max annot lvl2759|Eukaryota
KEGG koko:K06891
Evalue4.52e-29
EggNOG OGsCOG2127@1|root,2RY43@2759|Eukaryota
DescriptionATP-dependent Clp protease adaptor protein ClpS
COG categoryS
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7545Gchil7545Gracilaria chilensis NLEC103_M9 malegenetig00000007_pilon 1814464..1814820 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7545.t1.stop1Gchil7545.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000007_pilon 1814464..1814466 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7545.t1.CDS1Gchil7545.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 1814464..1814820 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7545.t1.exon1Gchil7545.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 1814464..1814820 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7545.t1.start1Gchil7545.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000007_pilon 1814818..1814820 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7545.t1Gchil7545.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000007_pilon 1814464..1814820 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7545.t1 ID=Gchil7545.t1|Name=Gchil7545.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=119bp
MATIDAPVKEDIRTKFNNLLLKTPTATPETESTGVRQKIDPGKYYKVLIF
NDEMHSKDFVTKVLLKVIPGLSPDAAFAIMNKAHTNGKAVVGVWIFEISE
GYCDMLRNNGLRSDIEEA*
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spliced messenger RNA

>Gchil7545.t1 ID=Gchil7545.t1|Name=Gchil7545.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=357bp|location=Sequence derived from alignment at tig00000007_pilon:1814464..1814820- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCACGATAGACGCGCCTGTCAAGGAGGACATTCGTACTAAGTTCAA
CAATCTTCTCTTGAAAACACCAACCGCTACCCCTGAAACTGAGTCTACCG
GAGTCAGGCAGAAGATCGACCCCGGGAAGTACTACAAAGTGCTGATTTTC
AACGATGAAATGCACTCGAAAGACTTCGTCACAAAGGTTTTGTTGAAGGT
TATTCCTGGTCTAAGTCCTGACGCTGCTTTCGCTATCATGAACAAGGCAC
ACACGAACGGCAAGGCTGTCGTAGGCGTTTGGATTTTCGAAATCAGTGAG
GGCTATTGTGATATGCTAAGAAACAATGGGCTTCGATCAGACATTGAAGA
GGCTTGA
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protein sequence of Gchil7545.t1

>Gchil7545.t1 ID=Gchil7545.t1|Name=Gchil7545.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=119bp
MATIDAPVKEDIRTKFNNLLLKTPTATPETESTGVRQKIDPGKYYKVLIF
NDEMHSKDFVTKVLLKVIPGLSPDAAFAIMNKAHTNGKAVVGVWIFEISE
GYCDMLRNNGLRSDIEEA*
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mRNA from alignment at tig00000007_pilon:1814464..1814820-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7545.t1 ID=Gchil7545.t1|Name=Gchil7545.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=357bp|location=Sequence derived from alignment at tig00000007_pilon:1814464..1814820- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCACGATAGACGCGCCTGTCAAGGAGGACATTCGTACTAAGTTCAA
CAATCTTCTCTTGAAAACACCAACCGCTACCCCTGAAACTGAGTCTACCG
GAGTCAGGCAGAAGATCGACCCCGGGAAGTACTACAAAGTGCTGATTTTC
AACGATGAAATGCACTCGAAAGACTTCGTCACAAAGGTTTTGTTGAAGGT
TATTCCTGGTCTAAGTCCTGACGCTGCTTTCGCTATCATGAACAAGGCAC
ACACGAACGGCAAGGCTGTCGTAGGCGTTTGGATTTTCGAAATCAGTGAG
GGCTATTGTGATATGCTAAGAAACAATGGGCTTCGATCAGACATTGAAGA
GGCTTGA
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Coding sequence (CDS) from alignment at tig00000007_pilon:1814464..1814820-

>Gchil7545.t1 ID=Gchil7545.t1|Name=Gchil7545.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=357bp|location=Sequence derived from alignment at tig00000007_pilon:1814464..1814820- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCACGATAGACGCGCCTGTCAAGGAGGACATTCGTACTAAGTTCAA
CAATCTTCTCTTGAAAACACCAACCGCTACCCCTGAAACTGAGTCTACCG
GAGTCAGGCAGAAGATCGACCCCGGGAAGTACTACAAAGTGCTGATTTTC
AACGATGAAATGCACTCGAAAGACTTCGTCACAAAGGTTTTGTTGAAGGT
TATTCCTGGTCTAAGTCCTGACGCTGCTTTCGCTATCATGAACAAGGCAC
ACACGAACGGCAAGGCTGTCGTAGGCGTTTGGATTTTCGAAATCAGTGAG
GGCTATTGTGATATGCTAAGAAACAATGGGCTTCGATCAGACATTGAAGA
GGCTTGA
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