Gchil7435.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7435.t1
Unique NameGchil7435.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length217
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:1153373..1154114 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog498742.BSPA14S_0673
Preferred namednaJ
PFAMsDnaJ,DnaJ_C,DnaJ_CXXCXGXG
Max annot lvl203691|Spirochaetes
KEGG koko:K03686,ko:K05516
Evalue1.57e-09
EggNOG OGsCOG0484@1|root,COG0484@2|Bacteria,2J614@203691|Spirochaetes
DescriptionATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins
COG categoryO
BRITEko00000,ko03029,ko03036,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7435Gchil7435Gracilaria chilensis NLEC103_M9 malegenetig00000007_pilon 1153373..1154114 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7435.t1Gchil7435.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000007_pilon 1153373..1154114 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7435.t1.start1Gchil7435.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000007_pilon 1153373..1153375 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7435.t1.CDS1Gchil7435.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 1153373..1153470 +
Gchil7435.t1.CDS2Gchil7435.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 1153562..1154114 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7435.t1.exon1Gchil7435.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 1153373..1153470 +
Gchil7435.t1.exon2Gchil7435.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 1153562..1154114 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7435.t1.intron1Gchil7435.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000007_pilon 1153471..1153561 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7435.t1.stop1Gchil7435.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000007_pilon 1154112..1154114 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7435.t1 ID=Gchil7435.t1|Name=Gchil7435.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=217bp
MQRPPKCPWTILGVKKSASAEQIRDAYRKMALKYHPDMNKGCKVSGRLFQ
EAKEAFEELKEKRRPSNIGNLYQTYRSNSEYARYRYTDTRRRTSTGDQFY
GFRRDKAGKGGFKGNYESGYQANEWVRRSADNQAFSSMQRRLRILERTGV
GAAVLIFGVALSFAAVGTEAVWKASNKGKSFDDLVRDLDKRDSSKERSGR
RRKMTNVMSDIESKPP*
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spliced messenger RNA

>Gchil7435.t1 ID=Gchil7435.t1|Name=Gchil7435.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=651bp|location=Sequence derived from alignment at tig00000007_pilon:1153373..1154114+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAAGACCCCCAAAATGTCCTTGGACTATTCTAGGCGTGAAAAAGAG
TGCTTCCGCGGAACAAATACGCGATGCATATCGGAAAATGGCACTGAAGT
ATCACCCGGACATGAACAAAGGTTGCAAAGTATCTGGTCGACTGTTTCAA
GAAGCTAAGGAAGCGTTTGAAGAACTGAAAGAAAAAAGAAGGCCCTCGAA
CATTGGGAACCTATACCAAACTTACCGAAGTAATTCAGAATACGCACGTT
ATCGATACACTGACACCAGAAGAAGGACATCGACTGGGGATCAGTTCTAT
GGGTTCAGACGTGATAAAGCTGGGAAGGGAGGTTTTAAAGGTAACTATGA
ATCTGGATATCAGGCAAATGAATGGGTTCGACGAAGTGCAGACAATCAGG
CGTTTTCGTCGATGCAACGGCGTCTACGAATTCTCGAACGTACTGGAGTT
GGTGCGGCAGTCTTGATCTTTGGAGTAGCTCTCTCTTTTGCGGCGGTGGG
CACTGAAGCAGTATGGAAAGCTAGCAATAAGGGGAAGTCTTTCGATGATC
TTGTAAGGGATTTAGACAAACGAGATTCGAGCAAGGAAAGAAGTGGGCGC
AGAAGAAAGATGACAAATGTTATGAGCGATATTGAAAGCAAGCCTCCGTA
A
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protein sequence of Gchil7435.t1

>Gchil7435.t1 ID=Gchil7435.t1|Name=Gchil7435.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=217bp
MQRPPKCPWTILGVKKSASAEQIRDAYRKMALKYHPDMNKGCKVSGRLFQ
EAKEAFEELKEKRRPSNIGNLYQTYRSNSEYARYRYTDTRRRTSTGDQFY
GFRRDKAGKGGFKGNYESGYQANEWVRRSADNQAFSSMQRRLRILERTGV
GAAVLIFGVALSFAAVGTEAVWKASNKGKSFDDLVRDLDKRDSSKERSGR
RRKMTNVMSDIESKPP*
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mRNA from alignment at tig00000007_pilon:1153373..1154114+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7435.t1 ID=Gchil7435.t1|Name=Gchil7435.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=742bp|location=Sequence derived from alignment at tig00000007_pilon:1153373..1154114+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAAAGACCCCCAAAATGTCCTTGGACTATTCTAGGCGTGAAAAAGAG
TGCTTCCGCGGAACAAATACGCGATGCATATCGGAAAATGGCACTGAAGT
ACGTTGCGAACATGTGCTTCACAAATCTCAACAACAGCACCGATTGTCTT
TCCGTTGACTTTTACATAAACACTAACACTTTTAGACAGGTATCACCCGG
ACATGAACAAAGGTTGCAAAGTATCTGGTCGACTGTTTCAAGAAGCTAAG
GAAGCGTTTGAAGAACTGAAAGAAAAAAGAAGGCCCTCGAACATTGGGAA
CCTATACCAAACTTACCGAAGTAATTCAGAATACGCACGTTATCGATACA
CTGACACCAGAAGAAGGACATCGACTGGGGATCAGTTCTATGGGTTCAGA
CGTGATAAAGCTGGGAAGGGAGGTTTTAAAGGTAACTATGAATCTGGATA
TCAGGCAAATGAATGGGTTCGACGAAGTGCAGACAATCAGGCGTTTTCGT
CGATGCAACGGCGTCTACGAATTCTCGAACGTACTGGAGTTGGTGCGGCA
GTCTTGATCTTTGGAGTAGCTCTCTCTTTTGCGGCGGTGGGCACTGAAGC
AGTATGGAAAGCTAGCAATAAGGGGAAGTCTTTCGATGATCTTGTAAGGG
ATTTAGACAAACGAGATTCGAGCAAGGAAAGAAGTGGGCGCAGAAGAAAG
ATGACAAATGTTATGAGCGATATTGAAAGCAAGCCTCCGTAA
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Coding sequence (CDS) from alignment at tig00000007_pilon:1153373..1154114+

>Gchil7435.t1 ID=Gchil7435.t1|Name=Gchil7435.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=651bp|location=Sequence derived from alignment at tig00000007_pilon:1153373..1154114+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAAAGACCCCCAAAATGTCCTTGGACTATTCTAGGCGTGAAAAAGAG
TGCTTCCGCGGAACAAATACGCGATGCATATCGGAAAATGGCACTGAAGT
ATCACCCGGACATGAACAAAGGTTGCAAAGTATCTGGTCGACTGTTTCAA
GAAGCTAAGGAAGCGTTTGAAGAACTGAAAGAAAAAAGAAGGCCCTCGAA
CATTGGGAACCTATACCAAACTTACCGAAGTAATTCAGAATACGCACGTT
ATCGATACACTGACACCAGAAGAAGGACATCGACTGGGGATCAGTTCTAT
GGGTTCAGACGTGATAAAGCTGGGAAGGGAGGTTTTAAAGGTAACTATGA
ATCTGGATATCAGGCAAATGAATGGGTTCGACGAAGTGCAGACAATCAGG
CGTTTTCGTCGATGCAACGGCGTCTACGAATTCTCGAACGTACTGGAGTT
GGTGCGGCAGTCTTGATCTTTGGAGTAGCTCTCTCTTTTGCGGCGGTGGG
CACTGAAGCAGTATGGAAAGCTAGCAATAAGGGGAAGTCTTTCGATGATC
TTGTAAGGGATTTAGACAAACGAGATTCGAGCAAGGAAAGAAGTGGGCGC
AGAAGAAAGATGACAAATGTTATGAGCGATATTGAAAGCAAGCCTCCGTA
A
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