Gchil7443.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7443.t1
Unique NameGchil7443.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length369
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:1237052..1238347 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2903.EOD14003
Preferred namePGP
PFAMsHydrolase_6,Hydrolase_like
Max annot lvl2759|Eukaryota
KEGG rclassRC00017,RC00151
KEGG koko:K01101,ko:K19269
KEGG ReactionR01334,R03024
KEGG Pathwayko00627,ko00630,ko01100,ko01110,ko01120,ko01130,ko01200,map00627,map00630,map01100,map01110,map01120,map01130,map01200
KEGG ModuleM00532
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0042578,GO:0044237,GO:0044424,GO:0044444,GO:0044464
Evalue9.67e-153
EggNOG OGsCOG0647@1|root,KOG2882@2759|Eukaryota
EC3.1.3.18,3.1.3.41,3.1.3.48
Descriptionphosphoglycolate phosphatase activity
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000,ko01009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7443Gchil7443Gracilaria chilensis NLEC103_M9 malegenetig00000007_pilon 1237052..1238347 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7443.t1Gchil7443.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000007_pilon 1237052..1238347 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7443.t1.stop1Gchil7443.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000007_pilon 1237052..1237054 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7443.t1.CDS1Gchil7443.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 1237052..1238094 -
Gchil7443.t1.CDS2Gchil7443.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 1238284..1238347 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7443.t1.exon1Gchil7443.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 1237052..1238094 -
Gchil7443.t1.exon2Gchil7443.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 1238284..1238347 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7443.t1.intron1Gchil7443.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000007_pilon 1238095..1238283 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7443.t1.start1Gchil7443.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000007_pilon 1238345..1238347 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7443.t1 ID=Gchil7443.t1|Name=Gchil7443.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=369bp
MSVRGLAPSISQCLHCSSLVTVFSNSFSFVPTQKVVSTKHHIYQPAKQAD
RSVIRGQPRMTIAPDMTSVQQVQKLTSPSELLSKTSIFIFDCDGVVWRGD
SVIDRVPEVLDYVRSLGKQVVFVTNNSTKSRAGYLKKFTKLGLDAQSEEI
FSSSFAAAAYLEQTDFKATGKKVYVIGEVGIPEELDLIGVPYIGGPAHAE
KQPNMAAGGRLEHDHDVGAVIVGFDRYINYYKIQYAQLCINENPGCKFIA
TNLDAVTHLTDAQEWAGNGSMVGAIKGCTGKEPILVGKPSSLMIDYIVSK
YGISRNEICMVGDRLDTDILFGKDNGLSSVLTLSGVTTEEKLLSPCNTIK
PDFYVNSIADFLPKSELN*
back to top

spliced messenger RNA

>Gchil7443.t1 ID=Gchil7443.t1|Name=Gchil7443.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1107bp|location=Sequence derived from alignment at tig00000007_pilon:1237052..1238347- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAGTCAGAGGCTTAGCACCATCCATTTCACAATGCCTTCATTGCTC
TTCTTTAGTGACCGTTTTTTCTAATAGTTTCTCGTTTGTTCCCACGCAGA
AGGTCGTCTCAACAAAGCATCATATTTACCAACCCGCGAAGCAAGCTGAT
CGAAGCGTGATTCGTGGCCAACCCCGCATGACCATTGCTCCGGATATGAC
TTCCGTTCAACAGGTCCAGAAGCTCACAAGCCCCTCCGAACTGCTCTCCA
AAACAAGTATTTTTATCTTCGATTGCGACGGCGTTGTCTGGCGTGGCGAC
TCTGTTATTGATAGAGTTCCAGAAGTACTGGACTATGTGCGGTCACTTGG
CAAGCAAGTGGTTTTCGTCACGAACAACTCCACGAAGAGCCGTGCAGGAT
ATCTTAAGAAGTTTACGAAACTTGGCCTAGATGCCCAATCGGAAGAGATA
TTCTCGTCAAGCTTCGCAGCGGCCGCATATCTCGAGCAGACAGATTTTAA
GGCCACCGGAAAAAAGGTGTATGTTATTGGTGAGGTGGGTATTCCAGAGG
AACTGGACCTGATTGGAGTGCCGTACATCGGTGGTCCCGCTCATGCCGAG
AAGCAACCGAACATGGCTGCTGGAGGGCGACTGGAGCATGACCATGATGT
CGGTGCAGTCATCGTTGGATTCGATCGTTACATCAACTACTATAAAATCC
AATATGCCCAGCTTTGTATTAACGAGAACCCAGGGTGCAAGTTCATCGCT
ACAAACCTCGATGCCGTTACGCATTTAACAGATGCCCAGGAATGGGCCGG
AAATGGGTCCATGGTCGGTGCCATCAAAGGCTGTACTGGCAAGGAACCAA
TCTTGGTCGGGAAGCCGTCATCGCTCATGATAGATTACATTGTCTCGAAA
TACGGGATATCTCGCAATGAAATATGTATGGTTGGGGACCGGCTTGACAC
GGACATTTTATTTGGTAAGGACAACGGGCTATCCAGCGTCCTAACTCTGT
CAGGTGTAACAACCGAGGAGAAGCTCCTTTCCCCCTGTAACACCATCAAA
CCCGACTTTTACGTCAATAGCATAGCAGATTTCTTACCGAAATCTGAACT
CAATTAA
back to top

protein sequence of Gchil7443.t1

>Gchil7443.t1 ID=Gchil7443.t1|Name=Gchil7443.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=369bp
MSVRGLAPSISQCLHCSSLVTVFSNSFSFVPTQKVVSTKHHIYQPAKQAD
RSVIRGQPRMTIAPDMTSVQQVQKLTSPSELLSKTSIFIFDCDGVVWRGD
SVIDRVPEVLDYVRSLGKQVVFVTNNSTKSRAGYLKKFTKLGLDAQSEEI
FSSSFAAAAYLEQTDFKATGKKVYVIGEVGIPEELDLIGVPYIGGPAHAE
KQPNMAAGGRLEHDHDVGAVIVGFDRYINYYKIQYAQLCINENPGCKFIA
TNLDAVTHLTDAQEWAGNGSMVGAIKGCTGKEPILVGKPSSLMIDYIVSK
YGISRNEICMVGDRLDTDILFGKDNGLSSVLTLSGVTTEEKLLSPCNTIK
PDFYVNSIADFLPKSELN*
back to top

mRNA from alignment at tig00000007_pilon:1237052..1238347-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7443.t1 ID=Gchil7443.t1|Name=Gchil7443.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1296bp|location=Sequence derived from alignment at tig00000007_pilon:1237052..1238347- (Gracilaria chilensis NLEC103_M9 male)
ATGTCAGTCAGAGGCTTAGCACCATCCATTTCACAATGCCTTCATTGCTC
TTCTTTAGTGACCGGTACGTCATATTCCTTCTACTCTGCAAGTCAGGCGC
TTTGTCGCCCCCTTTGGTCAAATATCATCGGCAGTTCGAGCCTGGTGCTT
AGCTCTTGTTTCGGTGTGTGACAACGAAGCCGTGCCCAGAAGCTTTCAAC
TCTTAAATTTCCTCACCCAGTATAATTTTGTTCCATTATGGCTTTTGTGC
CAGTTTTTTCTAATAGTTTCTCGTTTGTTCCCACGCAGAAGGTCGTCTCA
ACAAAGCATCATATTTACCAACCCGCGAAGCAAGCTGATCGAAGCGTGAT
TCGTGGCCAACCCCGCATGACCATTGCTCCGGATATGACTTCCGTTCAAC
AGGTCCAGAAGCTCACAAGCCCCTCCGAACTGCTCTCCAAAACAAGTATT
TTTATCTTCGATTGCGACGGCGTTGTCTGGCGTGGCGACTCTGTTATTGA
TAGAGTTCCAGAAGTACTGGACTATGTGCGGTCACTTGGCAAGCAAGTGG
TTTTCGTCACGAACAACTCCACGAAGAGCCGTGCAGGATATCTTAAGAAG
TTTACGAAACTTGGCCTAGATGCCCAATCGGAAGAGATATTCTCGTCAAG
CTTCGCAGCGGCCGCATATCTCGAGCAGACAGATTTTAAGGCCACCGGAA
AAAAGGTGTATGTTATTGGTGAGGTGGGTATTCCAGAGGAACTGGACCTG
ATTGGAGTGCCGTACATCGGTGGTCCCGCTCATGCCGAGAAGCAACCGAA
CATGGCTGCTGGAGGGCGACTGGAGCATGACCATGATGTCGGTGCAGTCA
TCGTTGGATTCGATCGTTACATCAACTACTATAAAATCCAATATGCCCAG
CTTTGTATTAACGAGAACCCAGGGTGCAAGTTCATCGCTACAAACCTCGA
TGCCGTTACGCATTTAACAGATGCCCAGGAATGGGCCGGAAATGGGTCCA
TGGTCGGTGCCATCAAAGGCTGTACTGGCAAGGAACCAATCTTGGTCGGG
AAGCCGTCATCGCTCATGATAGATTACATTGTCTCGAAATACGGGATATC
TCGCAATGAAATATGTATGGTTGGGGACCGGCTTGACACGGACATTTTAT
TTGGTAAGGACAACGGGCTATCCAGCGTCCTAACTCTGTCAGGTGTAACA
ACCGAGGAGAAGCTCCTTTCCCCCTGTAACACCATCAAACCCGACTTTTA
CGTCAATAGCATAGCAGATTTCTTACCGAAATCTGAACTCAATTAA
back to top

Coding sequence (CDS) from alignment at tig00000007_pilon:1237052..1238347-

>Gchil7443.t1 ID=Gchil7443.t1|Name=Gchil7443.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1107bp|location=Sequence derived from alignment at tig00000007_pilon:1237052..1238347- (Gracilaria chilensis NLEC103_M9 male)
ATGTCAGTCAGAGGCTTAGCACCATCCATTTCACAATGCCTTCATTGCTC
TTCTTTAGTGACCGTTTTTTCTAATAGTTTCTCGTTTGTTCCCACGCAGA
AGGTCGTCTCAACAAAGCATCATATTTACCAACCCGCGAAGCAAGCTGAT
CGAAGCGTGATTCGTGGCCAACCCCGCATGACCATTGCTCCGGATATGAC
TTCCGTTCAACAGGTCCAGAAGCTCACAAGCCCCTCCGAACTGCTCTCCA
AAACAAGTATTTTTATCTTCGATTGCGACGGCGTTGTCTGGCGTGGCGAC
TCTGTTATTGATAGAGTTCCAGAAGTACTGGACTATGTGCGGTCACTTGG
CAAGCAAGTGGTTTTCGTCACGAACAACTCCACGAAGAGCCGTGCAGGAT
ATCTTAAGAAGTTTACGAAACTTGGCCTAGATGCCCAATCGGAAGAGATA
TTCTCGTCAAGCTTCGCAGCGGCCGCATATCTCGAGCAGACAGATTTTAA
GGCCACCGGAAAAAAGGTGTATGTTATTGGTGAGGTGGGTATTCCAGAGG
AACTGGACCTGATTGGAGTGCCGTACATCGGTGGTCCCGCTCATGCCGAG
AAGCAACCGAACATGGCTGCTGGAGGGCGACTGGAGCATGACCATGATGT
CGGTGCAGTCATCGTTGGATTCGATCGTTACATCAACTACTATAAAATCC
AATATGCCCAGCTTTGTATTAACGAGAACCCAGGGTGCAAGTTCATCGCT
ACAAACCTCGATGCCGTTACGCATTTAACAGATGCCCAGGAATGGGCCGG
AAATGGGTCCATGGTCGGTGCCATCAAAGGCTGTACTGGCAAGGAACCAA
TCTTGGTCGGGAAGCCGTCATCGCTCATGATAGATTACATTGTCTCGAAA
TACGGGATATCTCGCAATGAAATATGTATGGTTGGGGACCGGCTTGACAC
GGACATTTTATTTGGTAAGGACAACGGGCTATCCAGCGTCCTAACTCTGT
CAGGTGTAACAACCGAGGAGAAGCTCCTTTCCCCCTGTAACACCATCAAA
CCCGACTTTTACGTCAATAGCATAGCAGATTTCTTACCGAAATCTGAACT
CAATTAA
back to top