Gchil7578.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7578.t1
Unique NameGchil7578.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length205
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:2075326..2075940 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog6412.HelroP101303
Preferred nameRNF38
PFAMszf-RING_2
Max annot lvl33208|Metazoa
KEGG koko:K19041
GOsGO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005929,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019941,GO:0030163,GO:0031514,GO:0031974,GO:0031981,GO:0032446,GO:0036126,GO:0036211,GO:0042995,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0051603,GO:0061630,GO:0061659,GO:0070013,GO:0070647,GO:0071704,GO:0097223,GO:0097729,GO:0120025,GO:0140096,GO:1901564,GO:1901565,GO:1901575
Evalue4.2e-16
EggNOG OGsKOG0800@1|root,KOG0800@2759|Eukaryota,38CVJ@33154|Opisthokonta,3BGBB@33208|Metazoa,3CYFH@33213|Bilateria
EC2.3.2.27
DescriptionRing finger protein
COG categoryO
BRITEko00000,ko01000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7578Gchil7578Gracilaria chilensis NLEC103_M9 malegenetig00000007_pilon 2075326..2075940 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7578.t1.start1Gchil7578.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000007_pilon 2075326..2075328 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7578.t1.CDS1Gchil7578.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 2075326..2075940 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7578.t1.exon1Gchil7578.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 2075326..2075940 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7578.t1.stop1Gchil7578.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000007_pilon 2075938..2075940 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7578.t1Gchil7578.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000007_pilon 2075326..2075940 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7578.t1 ID=Gchil7578.t1|Name=Gchil7578.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=205bp
MAPTALHAAHALDAPSVASKLATAHNATITTPSSSSADLFVVVIVSVFLF
LAASILRLVPWVVPISSRPRLSAGRALAAASQYEPIAGFANFGYGTLAAV
ATDRHVPTRAVPTYEMLLEIEDRIGYAKQGLTEEQIAILPIYQCDDRDCE
RHERRGMYCAICRDLYAQGHTVSILPCGDEFHAACISPWLKQQATCPLCR
CRFA*
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spliced messenger RNA

>Gchil7578.t1 ID=Gchil7578.t1|Name=Gchil7578.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=615bp|location=Sequence derived from alignment at tig00000007_pilon:2075326..2075940+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCGACTGCGCTGCATGCGGCTCACGCGCTGGACGCGCCATCTGT
CGCTTCAAAGCTGGCTACCGCGCACAATGCCACCATCACTACGCCGTCTT
CTAGCTCGGCGGACCTCTTCGTTGTTGTTATTGTATCCGTCTTCCTCTTC
TTGGCTGCTTCTATTCTGAGGCTCGTGCCATGGGTCGTGCCCATTAGCTC
CAGACCGCGCCTGTCGGCCGGTCGCGCCCTCGCCGCCGCCTCGCAGTATG
AGCCCATTGCCGGCTTTGCCAACTTTGGTTATGGCACTCTTGCTGCCGTC
GCCACTGACAGGCACGTGCCCACGAGAGCCGTCCCTACCTACGAGATGTT
GTTGGAGATTGAGGACCGAATAGGTTATGCAAAACAGGGCCTAACAGAGG
AGCAGATAGCCATCTTACCCATCTACCAATGCGACGACCGTGACTGTGAA
CGCCATGAAAGACGAGGCATGTACTGCGCTATCTGTCGCGACCTTTATGC
CCAGGGGCATACTGTGTCCATTTTACCGTGTGGCGACGAGTTTCACGCCG
CGTGCATTTCACCCTGGCTCAAACAACAGGCCACATGTCCACTGTGCCGC
TGTAGATTTGCATAG
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protein sequence of Gchil7578.t1

>Gchil7578.t1 ID=Gchil7578.t1|Name=Gchil7578.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=205bp
MAPTALHAAHALDAPSVASKLATAHNATITTPSSSSADLFVVVIVSVFLF
LAASILRLVPWVVPISSRPRLSAGRALAAASQYEPIAGFANFGYGTLAAV
ATDRHVPTRAVPTYEMLLEIEDRIGYAKQGLTEEQIAILPIYQCDDRDCE
RHERRGMYCAICRDLYAQGHTVSILPCGDEFHAACISPWLKQQATCPLCR
CRFA*
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mRNA from alignment at tig00000007_pilon:2075326..2075940+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7578.t1 ID=Gchil7578.t1|Name=Gchil7578.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=615bp|location=Sequence derived from alignment at tig00000007_pilon:2075326..2075940+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCCGACTGCGCTGCATGCGGCTCACGCGCTGGACGCGCCATCTGT
CGCTTCAAAGCTGGCTACCGCGCACAATGCCACCATCACTACGCCGTCTT
CTAGCTCGGCGGACCTCTTCGTTGTTGTTATTGTATCCGTCTTCCTCTTC
TTGGCTGCTTCTATTCTGAGGCTCGTGCCATGGGTCGTGCCCATTAGCTC
CAGACCGCGCCTGTCGGCCGGTCGCGCCCTCGCCGCCGCCTCGCAGTATG
AGCCCATTGCCGGCTTTGCCAACTTTGGTTATGGCACTCTTGCTGCCGTC
GCCACTGACAGGCACGTGCCCACGAGAGCCGTCCCTACCTACGAGATGTT
GTTGGAGATTGAGGACCGAATAGGTTATGCAAAACAGGGCCTAACAGAGG
AGCAGATAGCCATCTTACCCATCTACCAATGCGACGACCGTGACTGTGAA
CGCCATGAAAGACGAGGCATGTACTGCGCTATCTGTCGCGACCTTTATGC
CCAGGGGCATACTGTGTCCATTTTACCGTGTGGCGACGAGTTTCACGCCG
CGTGCATTTCACCCTGGCTCAAACAACAGGCCACATGTCCACTGTGCCGC
TGTAGATTTGCATAG
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Coding sequence (CDS) from alignment at tig00000007_pilon:2075326..2075940+

>Gchil7578.t1 ID=Gchil7578.t1|Name=Gchil7578.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=615bp|location=Sequence derived from alignment at tig00000007_pilon:2075326..2075940+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCCGACTGCGCTGCATGCGGCTCACGCGCTGGACGCGCCATCTGT
CGCTTCAAAGCTGGCTACCGCGCACAATGCCACCATCACTACGCCGTCTT
CTAGCTCGGCGGACCTCTTCGTTGTTGTTATTGTATCCGTCTTCCTCTTC
TTGGCTGCTTCTATTCTGAGGCTCGTGCCATGGGTCGTGCCCATTAGCTC
CAGACCGCGCCTGTCGGCCGGTCGCGCCCTCGCCGCCGCCTCGCAGTATG
AGCCCATTGCCGGCTTTGCCAACTTTGGTTATGGCACTCTTGCTGCCGTC
GCCACTGACAGGCACGTGCCCACGAGAGCCGTCCCTACCTACGAGATGTT
GTTGGAGATTGAGGACCGAATAGGTTATGCAAAACAGGGCCTAACAGAGG
AGCAGATAGCCATCTTACCCATCTACCAATGCGACGACCGTGACTGTGAA
CGCCATGAAAGACGAGGCATGTACTGCGCTATCTGTCGCGACCTTTATGC
CCAGGGGCATACTGTGTCCATTTTACCGTGTGGCGACGAGTTTCACGCCG
CGTGCATTTCACCCTGGCTCAAACAACAGGCCACATGTCCACTGTGCCGC
TGTAGATTTGCATAG
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