Gchil10327.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10327.t1
Unique NameGchil10327.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length89
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000031_piloncontigtig00000031_pilon:32033..32413 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10327Gchil10327Gracilaria chilensis NLEC103_M9 malegenetig00000031_pilon 32033..32413 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10327.t1Gchil10327.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000031_pilon 32033..32413 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10327.t1.start1Gchil10327.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000031_pilon 32033..32035 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10327.t1.CDS1Gchil10327.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000031_pilon 32033..32093 +
Gchil10327.t1.CDS2Gchil10327.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000031_pilon 32208..32413 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10327.t1.exon1Gchil10327.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000031_pilon 32033..32093 +
Gchil10327.t1.exon2Gchil10327.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000031_pilon 32208..32413 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10327.t1.intron1Gchil10327.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000031_pilon 32094..32207 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10327.t1.stop1Gchil10327.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000031_pilon 32411..32413 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10327.t1 ID=Gchil10327.t1|Name=Gchil10327.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=89bp
MSAVSAEISVSISRAQNDGGELSKTSHTVRMNEGDEVSASLKMNESDPSY
DDSCIDESWPYDKDSLVQKGDWTGDHDTGVFCVTFIPL*
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spliced messenger RNA

>Gchil10327.t1 ID=Gchil10327.t1|Name=Gchil10327.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=267bp|location=Sequence derived from alignment at tig00000031_pilon:32033..32413+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGCCGTGTCAGCAGAAATTTCCGTTTCCATTTCAAGGGCTCAAAA
TGATGGCGGTGAGTTGAGCAAGACGTCCCATACCGTGAGAATGAACGAAG
GAGACGAAGTGTCCGCGTCGCTCAAGATGAATGAGTCTGATCCTTCCTAC
GATGACTCTTGCATCGACGAAAGCTGGCCATACGATAAGGACAGTCTTGT
GCAGAAAGGTGATTGGACTGGCGATCATGACACGGGCGTCTTCTGCGTTA
CCTTTATCCCTCTGTAG
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protein sequence of Gchil10327.t1

>Gchil10327.t1 ID=Gchil10327.t1|Name=Gchil10327.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=89bp
MSAVSAEISVSISRAQNDGGELSKTSHTVRMNEGDEVSASLKMNESDPSY
DDSCIDESWPYDKDSLVQKGDWTGDHDTGVFCVTFIPL*
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mRNA from alignment at tig00000031_pilon:32033..32413+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10327.t1 ID=Gchil10327.t1|Name=Gchil10327.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=381bp|location=Sequence derived from alignment at tig00000031_pilon:32033..32413+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGCGCCGTGTCAGCAGAAATTTCCGTTTCCATTTCAAGGGCTCAAAA
TGATGGCGGTGGTACGTCTGAGTATGACATCGGTGCGAATCTCATAAACC
GAACGACTGGAGAACAATGCTACGTTTCAAAGCATGTAGAGATCGATGAT
AACCAAACGTACAACCCCCCGAAAGAGTTGAGCAAGACGTCCCATACCGT
GAGAATGAACGAAGGAGACGAAGTGTCCGCGTCGCTCAAGATGAATGAGT
CTGATCCTTCCTACGATGACTCTTGCATCGACGAAAGCTGGCCATACGAT
AAGGACAGTCTTGTGCAGAAAGGTGATTGGACTGGCGATCATGACACGGG
CGTCTTCTGCGTTACCTTTATCCCTCTGTAG
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Coding sequence (CDS) from alignment at tig00000031_pilon:32033..32413+

>Gchil10327.t1 ID=Gchil10327.t1|Name=Gchil10327.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=267bp|location=Sequence derived from alignment at tig00000031_pilon:32033..32413+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGCGCCGTGTCAGCAGAAATTTCCGTTTCCATTTCAAGGGCTCAAAA
TGATGGCGGTGAGTTGAGCAAGACGTCCCATACCGTGAGAATGAACGAAG
GAGACGAAGTGTCCGCGTCGCTCAAGATGAATGAGTCTGATCCTTCCTAC
GATGACTCTTGCATCGACGAAAGCTGGCCATACGATAAGGACAGTCTTGT
GCAGAAAGGTGATTGGACTGGCGATCATGACACGGGCGTCTTCTGCGTTA
CCTTTATCCCTCTGTAG
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