Gchil11005.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil11005.t1
Unique Name	Gchil11005.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	504

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000021_pilon	contig	tig00000021_pilon:164288..165799 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	248742.XP_005651958.1
PFAMs	ATP-synt_ab,ATP-synt_ab_N
Max annot lvl	3041\|Chlorophyta
KEGG ko	ko:K02147
KEGG TC	3.A.2.2
KEGG Pathway	ko00190,ko01100,ko04145,ko04150,ko04721,ko04966,ko05110,ko05120,ko05323,map00190,map01100,map04145,map04150,map04721,map04966,map05110,map05120,map05323
KEGG Module	M00160
Evalue	1.2e-280
EggNOG OGs	COG1156@1\|root,KOG1351@2759\|Eukaryota,37JA1@33090\|Viridiplantae,34H3M@3041\|Chlorophyta
Description	Vacuolar ATP synthase subunit B
COG category	C
BRITE	ko00000,ko00001,ko00002,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil11005	Gchil11005	Gracilaria chilensis NLEC103_M9 male	gene	tig00000021_pilon 164288..165799 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil11005.t1.start1	Gchil11005.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000021_pilon 164288..164290 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil11005.t1.CDS1	Gchil11005.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000021_pilon 164288..165799 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil11005.t1.exon1	Gchil11005.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000021_pilon 164288..165799 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil11005.t1.stop1	Gchil11005.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000021_pilon 165797..165799 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil11005.t1	Gchil11005.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000021_pilon 164288..165799 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000021_pilon:164288..165799+
coding sequence from alignment at tig00000021_pilon:164288..165799+

mRNA sequence

>Gchil11005.t1 ID=Gchil11005.t1|Name=Gchil11005.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=504bp
MAVDSVTSEMEAFNINKDAAEHDFILKPRLDYRTVSAVNGPLVVLDNVKF
PRYAEIVTLTLGDGTKRRGQVLEVNGDKAVVQVFEGTTGIDNRNTHVEFS
GEIMKTPVSRDMLGRIFNGSGKPIDNGPPVIPEAYLDIAGSSINPQSRTY
PEEMIQTGISTIDVMNSVARGQKIPLFSAAGLPHNEVAAQICRQAGLVKR
GKEGEGEDEDFAIVFAAMGVNTEAARFFTQDFEENGAMGKVTLFLNLAND
PTIERIVTPRLALTAAEYLAYECGMHVLVILTDMSSYADALREVSAAREE
VPGRRGYPGYMYTDLATIYERAGRVEGRPGSITQLPILTMPNDDITHPIP
DLTGYITEGQIYLDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTREDHS
SVSNQLYAGYAIGKDVIAMKAVVGEEALTPDDLLYLEFHEKFEKKFVAQG
AYEIRDVFSSLDLSWSLLRTFPKSMLKRIPGKILKKYYHREGAETEETPA
QEK*

spliced messenger RNA

>Gchil11005.t1 ID=Gchil11005.t1|Name=Gchil11005.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1512bp|location=Sequence derived from alignment at tig00000021_pilon:164288..165799+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGTCGATTCCGTCACCTCCGAGATGGAGGCATTTAACATCAACAA
AGATGCCGCCGAGCACGACTTCATCCTCAAGCCCCGTCTCGACTATCGCA
CCGTCTCCGCTGTCAACGGCCCGCTCGTCGTCCTTGACAACGTCAAATTC
CCGCGCTACGCCGAGATCGTCACCCTCACCCTCGGCGACGGCACCAAGCG
CCGCGGCCAGGTCCTCGAGGTCAATGGCGATAAGGCCGTTGTCCAGGTTT
TCGAGGGAACCACCGGTATCGACAATCGCAACACTCACGTCGAGTTCTCC
GGCGAAATCATGAAGACCCCCGTCTCACGGGACATGCTTGGTCGCATTTT
CAACGGATCGGGAAAGCCCATCGATAATGGACCCCCCGTCATTCCGGAGG
CTTATCTTGATATTGCAGGTTCTTCTATCAACCCGCAGTCCAGAACGTAT
CCTGAGGAGATGATTCAGACTGGAATTTCCACCATTGACGTGATGAATTC
TGTCGCTCGTGGCCAGAAGATCCCGCTCTTCAGTGCCGCCGGTCTGCCTC
ACAACGAAGTCGCCGCCCAGATCTGTCGTCAGGCAGGCCTCGTCAAGCGT
GGCAAAGAAGGCGAAGGAGAGGATGAGGATTTTGCCATTGTGTTTGCTGC
CATGGGTGTCAACACGGAAGCCGCTCGTTTCTTCACACAGGATTTCGAAG
AAAATGGAGCCATGGGAAAGGTCACACTGTTTCTCAACCTTGCGAACGAT
CCTACCATCGAACGTATTGTCACGCCTCGTCTCGCTCTCACCGCTGCAGA
ATATCTGGCTTACGAGTGCGGCATGCACGTGCTCGTCATTCTCACTGATA
TGAGCTCTTATGCCGACGCGCTGCGTGAGGTTTCAGCGGCTAGGGAAGAG
GTACCTGGACGTCGCGGATACCCAGGTTACATGTACACTGATCTTGCTAC
CATTTATGAACGTGCTGGACGTGTGGAAGGTCGCCCGGGTTCCATCACCC
AGCTGCCCATTCTCACTATGCCAAACGATGATATTACCCATCCAATCCCC
GATCTCACAGGCTACATTACTGAGGGTCAGATCTATCTTGACCGTCAACT
GCACAATCGTCAGATTTACCCGCCCATCAATGTGCTCCCCTCGCTCTCTC
GTCTTATGAAGTCTGCCATTGGAGAGGGTATGACGCGCGAGGATCATAGC
TCCGTATCGAATCAGCTATATGCCGGTTATGCAATTGGAAAGGATGTAAT
CGCAATGAAGGCTGTTGTAGGAGAGGAGGCCCTTACGCCCGACGACTTGC
TCTACCTTGAGTTTCACGAAAAGTTTGAGAAGAAGTTTGTGGCGCAGGGA
GCGTACGAAATTCGTGACGTGTTCTCGTCGCTGGATTTGTCCTGGTCTCT
ATTGCGTACCTTCCCGAAGAGTATGTTGAAACGTATCCCGGGGAAAATAC
TTAAGAAATACTACCACAGAGAGGGAGCCGAAACTGAGGAGACGCCGGCT
CAGGAGAAGTAG

protein sequence of Gchil11005.t1

>Gchil11005.t1 ID=Gchil11005.t1|Name=Gchil11005.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=504bp
MAVDSVTSEMEAFNINKDAAEHDFILKPRLDYRTVSAVNGPLVVLDNVKF
PRYAEIVTLTLGDGTKRRGQVLEVNGDKAVVQVFEGTTGIDNRNTHVEFS
GEIMKTPVSRDMLGRIFNGSGKPIDNGPPVIPEAYLDIAGSSINPQSRTY
PEEMIQTGISTIDVMNSVARGQKIPLFSAAGLPHNEVAAQICRQAGLVKR
GKEGEGEDEDFAIVFAAMGVNTEAARFFTQDFEENGAMGKVTLFLNLAND
PTIERIVTPRLALTAAEYLAYECGMHVLVILTDMSSYADALREVSAAREE
VPGRRGYPGYMYTDLATIYERAGRVEGRPGSITQLPILTMPNDDITHPIP
DLTGYITEGQIYLDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTREDHS
SVSNQLYAGYAIGKDVIAMKAVVGEEALTPDDLLYLEFHEKFEKKFVAQG
AYEIRDVFSSLDLSWSLLRTFPKSMLKRIPGKILKKYYHREGAETEETPA
QEK*

mRNA from alignment at tig00000021_pilon:164288..165799+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil11005.t1 ID=Gchil11005.t1|Name=Gchil11005.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1512bp|location=Sequence derived from alignment at tig00000021_pilon:164288..165799+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTGTCGATTCCGTCACCTCCGAGATGGAGGCATTTAACATCAACAA
AGATGCCGCCGAGCACGACTTCATCCTCAAGCCCCGTCTCGACTATCGCA
CCGTCTCCGCTGTCAACGGCCCGCTCGTCGTCCTTGACAACGTCAAATTC
CCGCGCTACGCCGAGATCGTCACCCTCACCCTCGGCGACGGCACCAAGCG
CCGCGGCCAGGTCCTCGAGGTCAATGGCGATAAGGCCGTTGTCCAGGTTT
TCGAGGGAACCACCGGTATCGACAATCGCAACACTCACGTCGAGTTCTCC
GGCGAAATCATGAAGACCCCCGTCTCACGGGACATGCTTGGTCGCATTTT
CAACGGATCGGGAAAGCCCATCGATAATGGACCCCCCGTCATTCCGGAGG
CTTATCTTGATATTGCAGGTTCTTCTATCAACCCGCAGTCCAGAACGTAT
CCTGAGGAGATGATTCAGACTGGAATTTCCACCATTGACGTGATGAATTC
TGTCGCTCGTGGCCAGAAGATCCCGCTCTTCAGTGCCGCCGGTCTGCCTC
ACAACGAAGTCGCCGCCCAGATCTGTCGTCAGGCAGGCCTCGTCAAGCGT
GGCAAAGAAGGCGAAGGAGAGGATGAGGATTTTGCCATTGTGTTTGCTGC
CATGGGTGTCAACACGGAAGCCGCTCGTTTCTTCACACAGGATTTCGAAG
AAAATGGAGCCATGGGAAAGGTCACACTGTTTCTCAACCTTGCGAACGAT
CCTACCATCGAACGTATTGTCACGCCTCGTCTCGCTCTCACCGCTGCAGA
ATATCTGGCTTACGAGTGCGGCATGCACGTGCTCGTCATTCTCACTGATA
TGAGCTCTTATGCCGACGCGCTGCGTGAGGTTTCAGCGGCTAGGGAAGAG
GTACCTGGACGTCGCGGATACCCAGGTTACATGTACACTGATCTTGCTAC
CATTTATGAACGTGCTGGACGTGTGGAAGGTCGCCCGGGTTCCATCACCC
AGCTGCCCATTCTCACTATGCCAAACGATGATATTACCCATCCAATCCCC
GATCTCACAGGCTACATTACTGAGGGTCAGATCTATCTTGACCGTCAACT
GCACAATCGTCAGATTTACCCGCCCATCAATGTGCTCCCCTCGCTCTCTC
GTCTTATGAAGTCTGCCATTGGAGAGGGTATGACGCGCGAGGATCATAGC
TCCGTATCGAATCAGCTATATGCCGGTTATGCAATTGGAAAGGATGTAAT
CGCAATGAAGGCTGTTGTAGGAGAGGAGGCCCTTACGCCCGACGACTTGC
TCTACCTTGAGTTTCACGAAAAGTTTGAGAAGAAGTTTGTGGCGCAGGGA
GCGTACGAAATTCGTGACGTGTTCTCGTCGCTGGATTTGTCCTGGTCTCT
ATTGCGTACCTTCCCGAAGAGTATGTTGAAACGTATCCCGGGGAAAATAC
TTAAGAAATACTACCACAGAGAGGGAGCCGAAACTGAGGAGACGCCGGCT
CAGGAGAAGTAG

Coding sequence (CDS) from alignment at tig00000021_pilon:164288..165799+

>Gchil11005.t1 ID=Gchil11005.t1|Name=Gchil11005.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1512bp|location=Sequence derived from alignment at tig00000021_pilon:164288..165799+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTGTCGATTCCGTCACCTCCGAGATGGAGGCATTTAACATCAACAA
AGATGCCGCCGAGCACGACTTCATCCTCAAGCCCCGTCTCGACTATCGCA
CCGTCTCCGCTGTCAACGGCCCGCTCGTCGTCCTTGACAACGTCAAATTC
CCGCGCTACGCCGAGATCGTCACCCTCACCCTCGGCGACGGCACCAAGCG
CCGCGGCCAGGTCCTCGAGGTCAATGGCGATAAGGCCGTTGTCCAGGTTT
TCGAGGGAACCACCGGTATCGACAATCGCAACACTCACGTCGAGTTCTCC
GGCGAAATCATGAAGACCCCCGTCTCACGGGACATGCTTGGTCGCATTTT
CAACGGATCGGGAAAGCCCATCGATAATGGACCCCCCGTCATTCCGGAGG
CTTATCTTGATATTGCAGGTTCTTCTATCAACCCGCAGTCCAGAACGTAT
CCTGAGGAGATGATTCAGACTGGAATTTCCACCATTGACGTGATGAATTC
TGTCGCTCGTGGCCAGAAGATCCCGCTCTTCAGTGCCGCCGGTCTGCCTC
ACAACGAAGTCGCCGCCCAGATCTGTCGTCAGGCAGGCCTCGTCAAGCGT
GGCAAAGAAGGCGAAGGAGAGGATGAGGATTTTGCCATTGTGTTTGCTGC
CATGGGTGTCAACACGGAAGCCGCTCGTTTCTTCACACAGGATTTCGAAG
AAAATGGAGCCATGGGAAAGGTCACACTGTTTCTCAACCTTGCGAACGAT
CCTACCATCGAACGTATTGTCACGCCTCGTCTCGCTCTCACCGCTGCAGA
ATATCTGGCTTACGAGTGCGGCATGCACGTGCTCGTCATTCTCACTGATA
TGAGCTCTTATGCCGACGCGCTGCGTGAGGTTTCAGCGGCTAGGGAAGAG
GTACCTGGACGTCGCGGATACCCAGGTTACATGTACACTGATCTTGCTAC
CATTTATGAACGTGCTGGACGTGTGGAAGGTCGCCCGGGTTCCATCACCC
AGCTGCCCATTCTCACTATGCCAAACGATGATATTACCCATCCAATCCCC
GATCTCACAGGCTACATTACTGAGGGTCAGATCTATCTTGACCGTCAACT
GCACAATCGTCAGATTTACCCGCCCATCAATGTGCTCCCCTCGCTCTCTC
GTCTTATGAAGTCTGCCATTGGAGAGGGTATGACGCGCGAGGATCATAGC
TCCGTATCGAATCAGCTATATGCCGGTTATGCAATTGGAAAGGATGTAAT
CGCAATGAAGGCTGTTGTAGGAGAGGAGGCCCTTACGCCCGACGACTTGC
TCTACCTTGAGTTTCACGAAAAGTTTGAGAAGAAGTTTGTGGCGCAGGGA
GCGTACGAAATTCGTGACGTGTTCTCGTCGCTGGATTTGTCCTGGTCTCT
ATTGCGTACCTTCCCGAAGAGTATGTTGAAACGTATCCCGGGGAAAATAC
TTAAGAAATACTACCACAGAGAGGGAGCCGAAACTGAGGAGACGCCGGCT
CAGGAGAAGTAG