Gchil11028.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil11028.t1
Unique NameGchil11028.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length379
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000021_piloncontigtig00000021_pilon:730449..731585 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705722.1
Max annot lvl130081.XP_005705722.1|-
Evalue3.2e-114
EggNOG OGsCOG0473@1|root,KOG0786@2759|Eukaryota
Description3-isopropylmalate dehydrogenase activity
COG categoryCE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil11028Gchil11028Gracilaria chilensis NLEC103_M9 malegenetig00000021_pilon 730449..731585 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil11028.t1.stop1Gchil11028.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000021_pilon 730449..730451 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil11028.t1.CDS1Gchil11028.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000021_pilon 730449..731585 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil11028.t1.exon1Gchil11028.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000021_pilon 730449..731585 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil11028.t1.start1Gchil11028.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000021_pilon 731583..731585 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil11028.t1Gchil11028.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000021_pilon 730449..731585 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil11028.t1 ID=Gchil11028.t1|Name=Gchil11028.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=379bp
MGPVKGSSQNPYNITVLAGDGAGPSVAASAVRVLEELTSYAEIHFDFKYA
DYGAEAFEKTGMLVPPETLQVCRDSDAVLRSYQGLQRGVGKDGSAHLQLR
DELGLFAQFRPVIIYPALASQSTLRKEVVENVDIMLVREISAGALGSESI
TKDESEVSEIRYSKNQISAIANAALNVALQRNGKILNVDKADAMSISRFW
RRIVHETIEREAKGNQRILLTDMFVDDFVREVILRPADFSVVITSNLFGD
ILAEVIAALAGPTRYSPSFWINREGLGVYGPADIYNASAYPDTNVEASPI
ALIRSASMMLKYALEEPAAADIIQRSLRTSMEEIVGTSSLNGNGNVALGT
TESTDVVTRSMQLMRQYEQVCDPTECGE*
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spliced messenger RNA

>Gchil11028.t1 ID=Gchil11028.t1|Name=Gchil11028.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1137bp|location=Sequence derived from alignment at tig00000021_pilon:730449..731585- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGCCCGTCAAGGGCTCCTCGCAGAATCCCTACAACATCACAGTGCT
GGCCGGTGATGGTGCGGGGCCCTCCGTCGCTGCTTCGGCAGTGCGTGTGC
TCGAAGAACTTACAAGTTATGCCGAGATCCATTTTGACTTCAAGTATGCT
GACTACGGCGCCGAGGCCTTCGAGAAAACTGGCATGCTGGTCCCGCCTGA
GACTCTGCAGGTTTGTCGCGACTCTGATGCCGTTTTGCGCAGTTACCAGG
GGCTTCAAAGAGGTGTTGGAAAGGACGGCAGCGCTCATTTGCAACTGAGA
GATGAACTTGGGTTGTTCGCTCAGTTTCGGCCTGTCATTATTTACCCGGC
TCTGGCATCACAAAGTACATTGAGAAAGGAAGTTGTTGAAAATGTGGATA
TCATGCTTGTCAGAGAGATTTCGGCTGGTGCGCTCGGTTCCGAAAGCATC
ACCAAGGATGAATCTGAGGTTAGTGAAATTAGGTACTCTAAAAACCAAAT
ATCTGCCATCGCCAATGCTGCACTCAATGTGGCGTTGCAACGAAACGGGA
AGATTCTGAATGTAGACAAGGCTGATGCTATGTCAATCTCGAGGTTTTGG
AGAAGGATCGTGCATGAGACCATTGAGCGCGAAGCAAAGGGAAACCAGAG
AATATTGCTTACCGATATGTTCGTCGATGATTTTGTTAGAGAGGTCATTC
TACGTCCGGCAGATTTCAGTGTTGTAATCACAAGTAATCTGTTCGGTGAT
ATTCTTGCAGAGGTCATTGCAGCACTGGCTGGTCCTACACGATACTCTCC
AAGTTTCTGGATCAATCGTGAAGGGCTCGGTGTGTACGGCCCGGCTGATA
TATATAATGCTTCTGCGTATCCGGACACGAATGTTGAGGCTTCTCCTATT
GCGCTGATTAGATCTGCCAGCATGATGCTCAAGTACGCCCTTGAAGAACC
CGCTGCTGCCGATATTATTCAGCGCTCGTTGAGGACGAGTATGGAAGAAA
TTGTAGGCACGTCCTCTTTGAATGGAAATGGGAACGTGGCCCTGGGAACG
ACAGAATCTACTGATGTTGTGACCAGGAGCATGCAGCTCATGAGACAATA
CGAACAGGTTTGTGATCCAACTGAATGTGGGGAATAG
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protein sequence of Gchil11028.t1

>Gchil11028.t1 ID=Gchil11028.t1|Name=Gchil11028.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=379bp
MGPVKGSSQNPYNITVLAGDGAGPSVAASAVRVLEELTSYAEIHFDFKYA
DYGAEAFEKTGMLVPPETLQVCRDSDAVLRSYQGLQRGVGKDGSAHLQLR
DELGLFAQFRPVIIYPALASQSTLRKEVVENVDIMLVREISAGALGSESI
TKDESEVSEIRYSKNQISAIANAALNVALQRNGKILNVDKADAMSISRFW
RRIVHETIEREAKGNQRILLTDMFVDDFVREVILRPADFSVVITSNLFGD
ILAEVIAALAGPTRYSPSFWINREGLGVYGPADIYNASAYPDTNVEASPI
ALIRSASMMLKYALEEPAAADIIQRSLRTSMEEIVGTSSLNGNGNVALGT
TESTDVVTRSMQLMRQYEQVCDPTECGE*
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mRNA from alignment at tig00000021_pilon:730449..731585-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil11028.t1 ID=Gchil11028.t1|Name=Gchil11028.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1137bp|location=Sequence derived from alignment at tig00000021_pilon:730449..731585- (Gracilaria chilensis NLEC103_M9 male)
ATGGGGCCCGTCAAGGGCTCCTCGCAGAATCCCTACAACATCACAGTGCT
GGCCGGTGATGGTGCGGGGCCCTCCGTCGCTGCTTCGGCAGTGCGTGTGC
TCGAAGAACTTACAAGTTATGCCGAGATCCATTTTGACTTCAAGTATGCT
GACTACGGCGCCGAGGCCTTCGAGAAAACTGGCATGCTGGTCCCGCCTGA
GACTCTGCAGGTTTGTCGCGACTCTGATGCCGTTTTGCGCAGTTACCAGG
GGCTTCAAAGAGGTGTTGGAAAGGACGGCAGCGCTCATTTGCAACTGAGA
GATGAACTTGGGTTGTTCGCTCAGTTTCGGCCTGTCATTATTTACCCGGC
TCTGGCATCACAAAGTACATTGAGAAAGGAAGTTGTTGAAAATGTGGATA
TCATGCTTGTCAGAGAGATTTCGGCTGGTGCGCTCGGTTCCGAAAGCATC
ACCAAGGATGAATCTGAGGTTAGTGAAATTAGGTACTCTAAAAACCAAAT
ATCTGCCATCGCCAATGCTGCACTCAATGTGGCGTTGCAACGAAACGGGA
AGATTCTGAATGTAGACAAGGCTGATGCTATGTCAATCTCGAGGTTTTGG
AGAAGGATCGTGCATGAGACCATTGAGCGCGAAGCAAAGGGAAACCAGAG
AATATTGCTTACCGATATGTTCGTCGATGATTTTGTTAGAGAGGTCATTC
TACGTCCGGCAGATTTCAGTGTTGTAATCACAAGTAATCTGTTCGGTGAT
ATTCTTGCAGAGGTCATTGCAGCACTGGCTGGTCCTACACGATACTCTCC
AAGTTTCTGGATCAATCGTGAAGGGCTCGGTGTGTACGGCCCGGCTGATA
TATATAATGCTTCTGCGTATCCGGACACGAATGTTGAGGCTTCTCCTATT
GCGCTGATTAGATCTGCCAGCATGATGCTCAAGTACGCCCTTGAAGAACC
CGCTGCTGCCGATATTATTCAGCGCTCGTTGAGGACGAGTATGGAAGAAA
TTGTAGGCACGTCCTCTTTGAATGGAAATGGGAACGTGGCCCTGGGAACG
ACAGAATCTACTGATGTTGTGACCAGGAGCATGCAGCTCATGAGACAATA
CGAACAGGTTTGTGATCCAACTGAATGTGGGGAATAG
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Coding sequence (CDS) from alignment at tig00000021_pilon:730449..731585-

>Gchil11028.t1 ID=Gchil11028.t1|Name=Gchil11028.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1137bp|location=Sequence derived from alignment at tig00000021_pilon:730449..731585- (Gracilaria chilensis NLEC103_M9 male)
ATGGGGCCCGTCAAGGGCTCCTCGCAGAATCCCTACAACATCACAGTGCT
GGCCGGTGATGGTGCGGGGCCCTCCGTCGCTGCTTCGGCAGTGCGTGTGC
TCGAAGAACTTACAAGTTATGCCGAGATCCATTTTGACTTCAAGTATGCT
GACTACGGCGCCGAGGCCTTCGAGAAAACTGGCATGCTGGTCCCGCCTGA
GACTCTGCAGGTTTGTCGCGACTCTGATGCCGTTTTGCGCAGTTACCAGG
GGCTTCAAAGAGGTGTTGGAAAGGACGGCAGCGCTCATTTGCAACTGAGA
GATGAACTTGGGTTGTTCGCTCAGTTTCGGCCTGTCATTATTTACCCGGC
TCTGGCATCACAAAGTACATTGAGAAAGGAAGTTGTTGAAAATGTGGATA
TCATGCTTGTCAGAGAGATTTCGGCTGGTGCGCTCGGTTCCGAAAGCATC
ACCAAGGATGAATCTGAGGTTAGTGAAATTAGGTACTCTAAAAACCAAAT
ATCTGCCATCGCCAATGCTGCACTCAATGTGGCGTTGCAACGAAACGGGA
AGATTCTGAATGTAGACAAGGCTGATGCTATGTCAATCTCGAGGTTTTGG
AGAAGGATCGTGCATGAGACCATTGAGCGCGAAGCAAAGGGAAACCAGAG
AATATTGCTTACCGATATGTTCGTCGATGATTTTGTTAGAGAGGTCATTC
TACGTCCGGCAGATTTCAGTGTTGTAATCACAAGTAATCTGTTCGGTGAT
ATTCTTGCAGAGGTCATTGCAGCACTGGCTGGTCCTACACGATACTCTCC
AAGTTTCTGGATCAATCGTGAAGGGCTCGGTGTGTACGGCCCGGCTGATA
TATATAATGCTTCTGCGTATCCGGACACGAATGTTGAGGCTTCTCCTATT
GCGCTGATTAGATCTGCCAGCATGATGCTCAAGTACGCCCTTGAAGAACC
CGCTGCTGCCGATATTATTCAGCGCTCGTTGAGGACGAGTATGGAAGAAA
TTGTAGGCACGTCCTCTTTGAATGGAAATGGGAACGTGGCCCTGGGAACG
ACAGAATCTACTGATGTTGTGACCAGGAGCATGCAGCTCATGAGACAATA
CGAACAGGTTTGTGATCCAACTGAATGTGGGGAATAG
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