Gchil7486.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil7486.t1
Unique Name	Gchil7486.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	729

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000007_pilon	contig	tig00000007_pilon:1438031..1440217 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708260.1
PFAMs	Methyltr_RsmB-F,zf-CCHC_2
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K15334,ko:K15335
Evalue	9.04e-132
EggNOG OGs	COG0144@1\|root,KOG2198@2759\|Eukaryota
EC	2.1.1.202,2.1.1.203
Description	tRNA (cytosine-5-)-methyltransferase activity
COG category	J
BRITE	ko00000,ko01000,ko03016

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil7486	Gchil7486	Gracilaria chilensis NLEC103_M9 male	gene	tig00000007_pilon 1438031..1440217 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7486.t1.start1	Gchil7486.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000007_pilon 1438031..1438033 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7486.t1.CDS1	Gchil7486.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000007_pilon 1438031..1440217 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7486.t1.exon1	Gchil7486.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000007_pilon 1438031..1440217 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7486.t1.stop1	Gchil7486.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000007_pilon 1440215..1440217 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7486.t1	Gchil7486.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000007_pilon 1438031..1440217 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000007_pilon:1438031..1440217+
coding sequence from alignment at tig00000007_pilon:1438031..1440217+

mRNA sequence

>Gchil7486.t1 ID=Gchil7486.t1|Name=Gchil7486.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=729bp
MIDLPTKRRRKHWKQKTPRRDNRKSRFDSDYTPDDGRNNEAFSEYYKAQN
VVDKEEFESMLATFAQPLPTSFRITEQGTLRKDIHTALVGDISKLFQNVK
STDDSPQIKPPKPLPWYPDELAWTVSAPRQLLRRDNALAPFHRFLVRMHA
LGAVNRQEAVSMIPPLLLDAQPGHAVLDMCAAPGSKTAQILEHLSERGIP
LSDPGLVIANDADIKRCWMLVHQLKRFASPHLVVTHHEAQHFPKFMAFDR
VLCDVPCTGDGTLRKAPDIWRRWSPEMGIGIHRLQRQILNRGIELLKPGG
TLVYSTCSMNPLENEAVVAHALRTFGTDINLVDCSQKLPELIRRPGLTTW
LVKDTARGLKPGQDQNDAGESEPNGEEDRKADGNDLDPNRPEGWFTSFEQ
VPLRRRKKVVSSLFPPSAEELSSGRFSLQKCMRLVPHDQDTGAFFVAVLV
KNELARLSRRQLRNEENRVKGDQSGIKETSDAKPDENNESEPGVGGNGPP
MSKKTGRGGTRLITDDPLVNVSDLCRKSLYNICSFFGLDSNIMEHCLMTR
GIDGTTFKRVVAVSRTVRTVLRHSLGTRDKEVIESKRELRVVNAGVRVLE
RTDRKDTTCHFRLIQEGAHIMRAIMKKRSVDAEVSDVLKLLQENVVRRDS
AEKFQAIFSLGSGSAMLCCGEREEAIIWVGKQILSVVMPKEVVDAMQSQL
RRILGEKPDLLAMETKKQEGLAEKTGHE*

spliced messenger RNA

>Gchil7486.t1 ID=Gchil7486.t1|Name=Gchil7486.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2187bp|location=Sequence derived from alignment at tig00000007_pilon:1438031..1440217+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTGATCTACCTACTAAAAGGCGTCGTAAGCATTGGAAGCAAAAGAC
ACCGCGAAGAGACAACCGCAAATCTCGATTTGATTCAGATTATACACCTG
ACGATGGCCGAAACAATGAGGCTTTTAGTGAGTACTATAAGGCGCAAAAC
GTAGTTGACAAGGAGGAGTTCGAATCTATGCTAGCTACCTTTGCCCAGCC
GCTTCCGACAAGTTTTCGGATAACAGAACAAGGAACACTTCGAAAGGACA
TTCATACGGCACTCGTCGGCGACATATCAAAGTTGTTCCAAAATGTGAAA
TCTACAGACGATTCTCCCCAGATTAAGCCACCAAAACCCCTTCCGTGGTA
TCCAGATGAATTAGCCTGGACAGTTTCCGCTCCTCGCCAGCTTTTAAGAC
GGGATAATGCGCTTGCTCCTTTTCACCGTTTCCTTGTCCGCATGCATGCC
CTCGGAGCGGTGAACCGACAAGAAGCTGTGAGCATGATACCCCCGCTCTT
ATTAGACGCCCAGCCTGGACATGCAGTGCTAGATATGTGTGCTGCACCTG
GCTCAAAAACTGCCCAAATCCTTGAACATCTTTCAGAAAGAGGAATTCCA
CTTTCAGACCCTGGTTTGGTGATAGCAAACGATGCCGATATTAAAAGATG
TTGGATGCTTGTCCATCAATTGAAGCGATTTGCTAGCCCCCATCTTGTGG
TAACTCATCATGAAGCTCAGCATTTTCCCAAGTTTATGGCCTTTGATCGG
GTGCTCTGTGATGTGCCTTGCACTGGAGACGGAACATTACGTAAAGCTCC
AGATATCTGGAGAAGATGGAGCCCTGAAATGGGCATTGGAATCCACCGTC
TTCAACGGCAAATTCTGAACAGAGGTATAGAACTGTTGAAGCCAGGTGGA
ACACTTGTTTATTCGACGTGCAGTATGAACCCGCTTGAAAATGAAGCAGT
TGTTGCTCATGCGCTACGAACGTTCGGGACTGACATAAACCTTGTGGACT
GTTCGCAGAAGCTACCCGAACTCATTCGCCGTCCTGGCCTTACGACATGG
CTTGTAAAAGACACTGCTCGTGGACTGAAGCCTGGTCAAGACCAAAACGA
TGCTGGGGAATCAGAGCCCAATGGTGAAGAGGACAGAAAAGCAGATGGAA
ATGACTTGGATCCAAACCGCCCCGAAGGGTGGTTTACATCGTTTGAGCAA
GTCCCCTTACGTCGTCGTAAAAAAGTTGTCAGCTCATTGTTCCCACCTTC
GGCAGAGGAGCTTTCGAGTGGACGATTTTCTCTTCAGAAATGCATGCGTC
TCGTTCCCCATGATCAAGACACAGGAGCTTTTTTTGTTGCGGTGCTTGTC
AAGAATGAGTTAGCGCGCCTTTCCCGCCGTCAACTGCGGAATGAGGAGAA
CCGCGTGAAGGGTGATCAGTCGGGCATCAAGGAGACGAGCGATGCGAAAC
CAGACGAGAACAATGAATCGGAACCTGGAGTTGGGGGCAATGGTCCTCCC
ATGTCCAAAAAGACTGGCCGCGGTGGTACAAGGCTTATAACCGATGATCC
TCTTGTGAACGTCTCGGACTTATGTCGCAAAAGTCTGTACAACATTTGTT
CATTCTTTGGCTTGGATTCTAACATCATGGAACATTGCCTGATGACGAGG
GGTATCGACGGTACTACATTCAAAAGAGTTGTGGCGGTTTCGCGCACAGT
GCGAACTGTCCTCAGACATTCTTTGGGTACTAGAGACAAAGAAGTTATTG
AAAGCAAACGGGAATTACGAGTAGTGAACGCGGGTGTACGAGTTTTGGAG
CGAACGGATAGAAAAGATACCACGTGCCACTTCAGGCTTATTCAGGAAGG
TGCTCACATCATGAGAGCAATAATGAAAAAGAGATCCGTTGATGCAGAAG
TTTCGGATGTGTTAAAGCTGCTTCAAGAGAATGTCGTTCGTCGTGACTCT
GCTGAAAAGTTCCAGGCCATATTTTCTCTTGGTAGTGGAAGTGCGATGCT
TTGTTGCGGGGAAAGAGAAGAAGCAATCATTTGGGTTGGAAAACAAATTC
TAAGTGTCGTGATGCCTAAGGAAGTTGTGGACGCCATGCAGTCTCAGCTT
CGGCGAATTCTCGGAGAAAAGCCTGATTTATTGGCCATGGAAACAAAAAA
ACAAGAGGGACTTGCTGAAAAGACTGGTCACGAGTGA

protein sequence of Gchil7486.t1

>Gchil7486.t1 ID=Gchil7486.t1|Name=Gchil7486.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=729bp
MIDLPTKRRRKHWKQKTPRRDNRKSRFDSDYTPDDGRNNEAFSEYYKAQN
VVDKEEFESMLATFAQPLPTSFRITEQGTLRKDIHTALVGDISKLFQNVK
STDDSPQIKPPKPLPWYPDELAWTVSAPRQLLRRDNALAPFHRFLVRMHA
LGAVNRQEAVSMIPPLLLDAQPGHAVLDMCAAPGSKTAQILEHLSERGIP
LSDPGLVIANDADIKRCWMLVHQLKRFASPHLVVTHHEAQHFPKFMAFDR
VLCDVPCTGDGTLRKAPDIWRRWSPEMGIGIHRLQRQILNRGIELLKPGG
TLVYSTCSMNPLENEAVVAHALRTFGTDINLVDCSQKLPELIRRPGLTTW
LVKDTARGLKPGQDQNDAGESEPNGEEDRKADGNDLDPNRPEGWFTSFEQ
VPLRRRKKVVSSLFPPSAEELSSGRFSLQKCMRLVPHDQDTGAFFVAVLV
KNELARLSRRQLRNEENRVKGDQSGIKETSDAKPDENNESEPGVGGNGPP
MSKKTGRGGTRLITDDPLVNVSDLCRKSLYNICSFFGLDSNIMEHCLMTR
GIDGTTFKRVVAVSRTVRTVLRHSLGTRDKEVIESKRELRVVNAGVRVLE
RTDRKDTTCHFRLIQEGAHIMRAIMKKRSVDAEVSDVLKLLQENVVRRDS
AEKFQAIFSLGSGSAMLCCGEREEAIIWVGKQILSVVMPKEVVDAMQSQL
RRILGEKPDLLAMETKKQEGLAEKTGHE*

mRNA from alignment at tig00000007_pilon:1438031..1440217+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil7486.t1 ID=Gchil7486.t1|Name=Gchil7486.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2187bp|location=Sequence derived from alignment at tig00000007_pilon:1438031..1440217+ (Gracilaria chilensis NLEC103_M9 male)
ATGATTGATCTACCTACTAAAAGGCGTCGTAAGCATTGGAAGCAAAAGAC
ACCGCGAAGAGACAACCGCAAATCTCGATTTGATTCAGATTATACACCTG
ACGATGGCCGAAACAATGAGGCTTTTAGTGAGTACTATAAGGCGCAAAAC
GTAGTTGACAAGGAGGAGTTCGAATCTATGCTAGCTACCTTTGCCCAGCC
GCTTCCGACAAGTTTTCGGATAACAGAACAAGGAACACTTCGAAAGGACA
TTCATACGGCACTCGTCGGCGACATATCAAAGTTGTTCCAAAATGTGAAA
TCTACAGACGATTCTCCCCAGATTAAGCCACCAAAACCCCTTCCGTGGTA
TCCAGATGAATTAGCCTGGACAGTTTCCGCTCCTCGCCAGCTTTTAAGAC
GGGATAATGCGCTTGCTCCTTTTCACCGTTTCCTTGTCCGCATGCATGCC
CTCGGAGCGGTGAACCGACAAGAAGCTGTGAGCATGATACCCCCGCTCTT
ATTAGACGCCCAGCCTGGACATGCAGTGCTAGATATGTGTGCTGCACCTG
GCTCAAAAACTGCCCAAATCCTTGAACATCTTTCAGAAAGAGGAATTCCA
CTTTCAGACCCTGGTTTGGTGATAGCAAACGATGCCGATATTAAAAGATG
TTGGATGCTTGTCCATCAATTGAAGCGATTTGCTAGCCCCCATCTTGTGG
TAACTCATCATGAAGCTCAGCATTTTCCCAAGTTTATGGCCTTTGATCGG
GTGCTCTGTGATGTGCCTTGCACTGGAGACGGAACATTACGTAAAGCTCC
AGATATCTGGAGAAGATGGAGCCCTGAAATGGGCATTGGAATCCACCGTC
TTCAACGGCAAATTCTGAACAGAGGTATAGAACTGTTGAAGCCAGGTGGA
ACACTTGTTTATTCGACGTGCAGTATGAACCCGCTTGAAAATGAAGCAGT
TGTTGCTCATGCGCTACGAACGTTCGGGACTGACATAAACCTTGTGGACT
GTTCGCAGAAGCTACCCGAACTCATTCGCCGTCCTGGCCTTACGACATGG
CTTGTAAAAGACACTGCTCGTGGACTGAAGCCTGGTCAAGACCAAAACGA
TGCTGGGGAATCAGAGCCCAATGGTGAAGAGGACAGAAAAGCAGATGGAA
ATGACTTGGATCCAAACCGCCCCGAAGGGTGGTTTACATCGTTTGAGCAA
GTCCCCTTACGTCGTCGTAAAAAAGTTGTCAGCTCATTGTTCCCACCTTC
GGCAGAGGAGCTTTCGAGTGGACGATTTTCTCTTCAGAAATGCATGCGTC
TCGTTCCCCATGATCAAGACACAGGAGCTTTTTTTGTTGCGGTGCTTGTC
AAGAATGAGTTAGCGCGCCTTTCCCGCCGTCAACTGCGGAATGAGGAGAA
CCGCGTGAAGGGTGATCAGTCGGGCATCAAGGAGACGAGCGATGCGAAAC
CAGACGAGAACAATGAATCGGAACCTGGAGTTGGGGGCAATGGTCCTCCC
ATGTCCAAAAAGACTGGCCGCGGTGGTACAAGGCTTATAACCGATGATCC
TCTTGTGAACGTCTCGGACTTATGTCGCAAAAGTCTGTACAACATTTGTT
CATTCTTTGGCTTGGATTCTAACATCATGGAACATTGCCTGATGACGAGG
GGTATCGACGGTACTACATTCAAAAGAGTTGTGGCGGTTTCGCGCACAGT
GCGAACTGTCCTCAGACATTCTTTGGGTACTAGAGACAAAGAAGTTATTG
AAAGCAAACGGGAATTACGAGTAGTGAACGCGGGTGTACGAGTTTTGGAG
CGAACGGATAGAAAAGATACCACGTGCCACTTCAGGCTTATTCAGGAAGG
TGCTCACATCATGAGAGCAATAATGAAAAAGAGATCCGTTGATGCAGAAG
TTTCGGATGTGTTAAAGCTGCTTCAAGAGAATGTCGTTCGTCGTGACTCT
GCTGAAAAGTTCCAGGCCATATTTTCTCTTGGTAGTGGAAGTGCGATGCT
TTGTTGCGGGGAAAGAGAAGAAGCAATCATTTGGGTTGGAAAACAAATTC
TAAGTGTCGTGATGCCTAAGGAAGTTGTGGACGCCATGCAGTCTCAGCTT
CGGCGAATTCTCGGAGAAAAGCCTGATTTATTGGCCATGGAAACAAAAAA
ACAAGAGGGACTTGCTGAAAAGACTGGTCACGAGTGA

Coding sequence (CDS) from alignment at tig00000007_pilon:1438031..1440217+

>Gchil7486.t1 ID=Gchil7486.t1|Name=Gchil7486.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2187bp|location=Sequence derived from alignment at tig00000007_pilon:1438031..1440217+ (Gracilaria chilensis NLEC103_M9 male)
ATGATTGATCTACCTACTAAAAGGCGTCGTAAGCATTGGAAGCAAAAGAC
ACCGCGAAGAGACAACCGCAAATCTCGATTTGATTCAGATTATACACCTG
ACGATGGCCGAAACAATGAGGCTTTTAGTGAGTACTATAAGGCGCAAAAC
GTAGTTGACAAGGAGGAGTTCGAATCTATGCTAGCTACCTTTGCCCAGCC
GCTTCCGACAAGTTTTCGGATAACAGAACAAGGAACACTTCGAAAGGACA
TTCATACGGCACTCGTCGGCGACATATCAAAGTTGTTCCAAAATGTGAAA
TCTACAGACGATTCTCCCCAGATTAAGCCACCAAAACCCCTTCCGTGGTA
TCCAGATGAATTAGCCTGGACAGTTTCCGCTCCTCGCCAGCTTTTAAGAC
GGGATAATGCGCTTGCTCCTTTTCACCGTTTCCTTGTCCGCATGCATGCC
CTCGGAGCGGTGAACCGACAAGAAGCTGTGAGCATGATACCCCCGCTCTT
ATTAGACGCCCAGCCTGGACATGCAGTGCTAGATATGTGTGCTGCACCTG
GCTCAAAAACTGCCCAAATCCTTGAACATCTTTCAGAAAGAGGAATTCCA
CTTTCAGACCCTGGTTTGGTGATAGCAAACGATGCCGATATTAAAAGATG
TTGGATGCTTGTCCATCAATTGAAGCGATTTGCTAGCCCCCATCTTGTGG
TAACTCATCATGAAGCTCAGCATTTTCCCAAGTTTATGGCCTTTGATCGG
GTGCTCTGTGATGTGCCTTGCACTGGAGACGGAACATTACGTAAAGCTCC
AGATATCTGGAGAAGATGGAGCCCTGAAATGGGCATTGGAATCCACCGTC
TTCAACGGCAAATTCTGAACAGAGGTATAGAACTGTTGAAGCCAGGTGGA
ACACTTGTTTATTCGACGTGCAGTATGAACCCGCTTGAAAATGAAGCAGT
TGTTGCTCATGCGCTACGAACGTTCGGGACTGACATAAACCTTGTGGACT
GTTCGCAGAAGCTACCCGAACTCATTCGCCGTCCTGGCCTTACGACATGG
CTTGTAAAAGACACTGCTCGTGGACTGAAGCCTGGTCAAGACCAAAACGA
TGCTGGGGAATCAGAGCCCAATGGTGAAGAGGACAGAAAAGCAGATGGAA
ATGACTTGGATCCAAACCGCCCCGAAGGGTGGTTTACATCGTTTGAGCAA
GTCCCCTTACGTCGTCGTAAAAAAGTTGTCAGCTCATTGTTCCCACCTTC
GGCAGAGGAGCTTTCGAGTGGACGATTTTCTCTTCAGAAATGCATGCGTC
TCGTTCCCCATGATCAAGACACAGGAGCTTTTTTTGTTGCGGTGCTTGTC
AAGAATGAGTTAGCGCGCCTTTCCCGCCGTCAACTGCGGAATGAGGAGAA
CCGCGTGAAGGGTGATCAGTCGGGCATCAAGGAGACGAGCGATGCGAAAC
CAGACGAGAACAATGAATCGGAACCTGGAGTTGGGGGCAATGGTCCTCCC
ATGTCCAAAAAGACTGGCCGCGGTGGTACAAGGCTTATAACCGATGATCC
TCTTGTGAACGTCTCGGACTTATGTCGCAAAAGTCTGTACAACATTTGTT
CATTCTTTGGCTTGGATTCTAACATCATGGAACATTGCCTGATGACGAGG
GGTATCGACGGTACTACATTCAAAAGAGTTGTGGCGGTTTCGCGCACAGT
GCGAACTGTCCTCAGACATTCTTTGGGTACTAGAGACAAAGAAGTTATTG
AAAGCAAACGGGAATTACGAGTAGTGAACGCGGGTGTACGAGTTTTGGAG
CGAACGGATAGAAAAGATACCACGTGCCACTTCAGGCTTATTCAGGAAGG
TGCTCACATCATGAGAGCAATAATGAAAAAGAGATCCGTTGATGCAGAAG
TTTCGGATGTGTTAAAGCTGCTTCAAGAGAATGTCGTTCGTCGTGACTCT
GCTGAAAAGTTCCAGGCCATATTTTCTCTTGGTAGTGGAAGTGCGATGCT
TTGTTGCGGGGAAAGAGAAGAAGCAATCATTTGGGTTGGAAAACAAATTC
TAAGTGTCGTGATGCCTAAGGAAGTTGTGGACGCCATGCAGTCTCAGCTT
CGGCGAATTCTCGGAGAAAAGCCTGATTTATTGGCCATGGAAACAAAAAA
ACAAGAGGGACTTGCTGAAAAGACTGGTCACGAGTGA