Gchil2048.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2048.t1
Unique Name	Gchil2048.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	574

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000019_pilon	contig	tig00000019_pilon:260951..262672 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2048	Gchil2048	Gracilaria chilensis NLEC103_M9 male	gene	tig00000019_pilon 260951..262672 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2048.t1.start1	Gchil2048.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000019_pilon 260951..260953 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2048.t1.CDS1	Gchil2048.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000019_pilon 260951..262672 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2048.t1.exon1	Gchil2048.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000019_pilon 260951..262672 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2048.t1.stop1	Gchil2048.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000019_pilon 262670..262672 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2048.t1	Gchil2048.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000019_pilon 260951..262672 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000019_pilon:260951..262672+
coding sequence from alignment at tig00000019_pilon:260951..262672+

mRNA sequence

>Gchil2048.t1 ID=Gchil2048.t1|Name=Gchil2048.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=574bp
MALARTSTPPASSATHAHQLALRRSASDFELHHHMHNLETAAADGNLEAM
VTLAALCLNESGTVLYDPQRAVRLYERAAGSGSLDALYTLACLYEDGAHN
VPHNPQKAVRLYETAIAGGSAQAMHGLALLLEEGSEFAGEDSVPPDPQRA
LCLHQAAVDAGSLDALHSLARLLRYGVQGIEKDPNRSIQIYERAIELGSS
SAMNDLAHLLEDGTDDGKVDPDVLRARELYERAIDEGHTGAMCNLARIFR
DGNSQIPVNTEAAATLYEMAMNNGHKSAICPLAAIMADGSHDFEPDMQRA
IALYERAIEVGESDAYFSLGFLMEEGRPDLPQDLARAIQLYEQAAELDDV
LAMDRLAYLLLHGAPGVQTDHERALELYENAADMGSSAAMVNHALVLERG
TDEIEADPQKALDLLRTAADRGYPAALLRLATIVLNGAYGETHDPEHAVD
LLETAVDRGSTPAMILLGELLEGGQYGVPKDLTRAVELYEEAIDYGDTSA
ANKLGQLLEEGADGVPQDAARALKLYESAADCNNDEAFLLLANLLEKGAP
GVEKDSSRAAELREIAKQRESGW*

spliced messenger RNA

>Gchil2048.t1 ID=Gchil2048.t1|Name=Gchil2048.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1722bp|location=Sequence derived from alignment at tig00000019_pilon:260951..262672+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCTCGCCAGGACCTCCACACCCCCCGCCTCCTCCGCCACTCATGC
GCACCAGCTCGCACTACGTCGCTCCGCCTCCGACTTCGAGCTGCACCACC
ACATGCATAATCTCGAGACCGCCGCCGCCGACGGCAACCTCGAAGCCATG
GTCACCTTAGCCGCGCTTTGCCTCAACGAATCTGGCACCGTACTGTACGA
CCCGCAACGCGCCGTCCGCCTCTACGAGCGCGCCGCTGGCTCCGGCAGTC
TCGACGCTCTGTACACTCTTGCCTGTCTCTACGAAGACGGTGCTCACAAC
GTCCCGCACAATCCACAGAAAGCAGTGCGTCTGTATGAAACCGCCATTGC
CGGTGGTAGCGCCCAGGCCATGCATGGCTTGGCTCTTCTGTTGGAGGAGG
GAAGCGAATTTGCTGGAGAGGACAGCGTCCCGCCTGATCCCCAGCGCGCT
TTGTGTCTGCACCAGGCTGCCGTCGATGCGGGCAGCCTCGATGCCCTGCA
CAGCCTGGCAAGACTGCTCCGCTACGGCGTGCAAGGCATTGAAAAGGACC
CCAATCGTTCCATCCAAATCTATGAACGCGCCATTGAGCTCGGCAGCAGC
AGCGCCATGAACGACCTGGCCCATCTACTGGAGGACGGTACGGACGACGG
CAAAGTAGATCCTGATGTATTGCGCGCCCGCGAGCTCTATGAACGTGCCA
TTGACGAGGGCCACACCGGCGCCATGTGCAATTTGGCACGCATCTTCCGC
GACGGCAACTCTCAAATTCCCGTTAACACCGAGGCCGCCGCCACCTTGTA
CGAAATGGCTATGAATAATGGCCACAAGTCGGCCATCTGTCCCCTGGCCG
CCATCATGGCCGATGGCTCCCACGATTTTGAGCCCGACATGCAGCGTGCC
ATCGCGCTGTACGAACGCGCTATAGAGGTGGGCGAATCCGACGCCTACTT
CTCACTCGGCTTCCTCATGGAGGAAGGTCGGCCTGACCTCCCACAGGACC
TTGCGCGCGCCATACAATTGTATGAACAAGCCGCCGAGCTGGATGACGTT
CTCGCCATGGATCGTTTGGCGTACCTTCTACTTCATGGAGCCCCGGGCGT
CCAGACCGACCACGAACGTGCCCTGGAGCTTTACGAAAATGCGGCTGATA
TGGGTAGCTCGGCTGCCATGGTCAACCATGCGCTTGTGCTGGAAAGAGGC
ACTGACGAAATTGAAGCCGATCCTCAGAAAGCGTTGGATTTGTTACGCAC
GGCCGCCGACAGAGGTTATCCGGCCGCGCTCCTGAGACTGGCCACTATTG
TGTTGAACGGGGCTTATGGTGAGACGCACGACCCAGAGCACGCTGTTGAC
TTGCTTGAGACCGCTGTGGACCGCGGCTCAACTCCAGCTATGATTCTCTT
GGGTGAACTGCTGGAAGGTGGACAGTACGGAGTGCCCAAGGATCTCACCC
GAGCCGTGGAGCTATACGAAGAGGCTATTGACTATGGCGATACTTCTGCC
GCAAACAAGCTGGGACAGCTTCTTGAGGAGGGGGCCGACGGCGTGCCTCA
AGACGCTGCCAGGGCATTGAAACTATATGAAAGCGCGGCCGATTGCAACA
ATGACGAGGCGTTTTTGCTCTTAGCAAATTTGCTGGAAAAAGGCGCTCCT
GGCGTGGAGAAGGACTCAAGCAGAGCTGCGGAGCTGAGAGAGATTGCCAA
ACAGCGGGAGTCGGGATGGTAA

protein sequence of Gchil2048.t1

>Gchil2048.t1 ID=Gchil2048.t1|Name=Gchil2048.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=574bp
MALARTSTPPASSATHAHQLALRRSASDFELHHHMHNLETAAADGNLEAM
VTLAALCLNESGTVLYDPQRAVRLYERAAGSGSLDALYTLACLYEDGAHN
VPHNPQKAVRLYETAIAGGSAQAMHGLALLLEEGSEFAGEDSVPPDPQRA
LCLHQAAVDAGSLDALHSLARLLRYGVQGIEKDPNRSIQIYERAIELGSS
SAMNDLAHLLEDGTDDGKVDPDVLRARELYERAIDEGHTGAMCNLARIFR
DGNSQIPVNTEAAATLYEMAMNNGHKSAICPLAAIMADGSHDFEPDMQRA
IALYERAIEVGESDAYFSLGFLMEEGRPDLPQDLARAIQLYEQAAELDDV
LAMDRLAYLLLHGAPGVQTDHERALELYENAADMGSSAAMVNHALVLERG
TDEIEADPQKALDLLRTAADRGYPAALLRLATIVLNGAYGETHDPEHAVD
LLETAVDRGSTPAMILLGELLEGGQYGVPKDLTRAVELYEEAIDYGDTSA
ANKLGQLLEEGADGVPQDAARALKLYESAADCNNDEAFLLLANLLEKGAP
GVEKDSSRAAELREIAKQRESGW*

mRNA from alignment at tig00000019_pilon:260951..262672+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2048.t1 ID=Gchil2048.t1|Name=Gchil2048.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1722bp|location=Sequence derived from alignment at tig00000019_pilon:260951..262672+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCTCGCCAGGACCTCCACACCCCCCGCCTCCTCCGCCACTCATGC
GCACCAGCTCGCACTACGTCGCTCCGCCTCCGACTTCGAGCTGCACCACC
ACATGCATAATCTCGAGACCGCCGCCGCCGACGGCAACCTCGAAGCCATG
GTCACCTTAGCCGCGCTTTGCCTCAACGAATCTGGCACCGTACTGTACGA
CCCGCAACGCGCCGTCCGCCTCTACGAGCGCGCCGCTGGCTCCGGCAGTC
TCGACGCTCTGTACACTCTTGCCTGTCTCTACGAAGACGGTGCTCACAAC
GTCCCGCACAATCCACAGAAAGCAGTGCGTCTGTATGAAACCGCCATTGC
CGGTGGTAGCGCCCAGGCCATGCATGGCTTGGCTCTTCTGTTGGAGGAGG
GAAGCGAATTTGCTGGAGAGGACAGCGTCCCGCCTGATCCCCAGCGCGCT
TTGTGTCTGCACCAGGCTGCCGTCGATGCGGGCAGCCTCGATGCCCTGCA
CAGCCTGGCAAGACTGCTCCGCTACGGCGTGCAAGGCATTGAAAAGGACC
CCAATCGTTCCATCCAAATCTATGAACGCGCCATTGAGCTCGGCAGCAGC
AGCGCCATGAACGACCTGGCCCATCTACTGGAGGACGGTACGGACGACGG
CAAAGTAGATCCTGATGTATTGCGCGCCCGCGAGCTCTATGAACGTGCCA
TTGACGAGGGCCACACCGGCGCCATGTGCAATTTGGCACGCATCTTCCGC
GACGGCAACTCTCAAATTCCCGTTAACACCGAGGCCGCCGCCACCTTGTA
CGAAATGGCTATGAATAATGGCCACAAGTCGGCCATCTGTCCCCTGGCCG
CCATCATGGCCGATGGCTCCCACGATTTTGAGCCCGACATGCAGCGTGCC
ATCGCGCTGTACGAACGCGCTATAGAGGTGGGCGAATCCGACGCCTACTT
CTCACTCGGCTTCCTCATGGAGGAAGGTCGGCCTGACCTCCCACAGGACC
TTGCGCGCGCCATACAATTGTATGAACAAGCCGCCGAGCTGGATGACGTT
CTCGCCATGGATCGTTTGGCGTACCTTCTACTTCATGGAGCCCCGGGCGT
CCAGACCGACCACGAACGTGCCCTGGAGCTTTACGAAAATGCGGCTGATA
TGGGTAGCTCGGCTGCCATGGTCAACCATGCGCTTGTGCTGGAAAGAGGC
ACTGACGAAATTGAAGCCGATCCTCAGAAAGCGTTGGATTTGTTACGCAC
GGCCGCCGACAGAGGTTATCCGGCCGCGCTCCTGAGACTGGCCACTATTG
TGTTGAACGGGGCTTATGGTGAGACGCACGACCCAGAGCACGCTGTTGAC
TTGCTTGAGACCGCTGTGGACCGCGGCTCAACTCCAGCTATGATTCTCTT
GGGTGAACTGCTGGAAGGTGGACAGTACGGAGTGCCCAAGGATCTCACCC
GAGCCGTGGAGCTATACGAAGAGGCTATTGACTATGGCGATACTTCTGCC
GCAAACAAGCTGGGACAGCTTCTTGAGGAGGGGGCCGACGGCGTGCCTCA
AGACGCTGCCAGGGCATTGAAACTATATGAAAGCGCGGCCGATTGCAACA
ATGACGAGGCGTTTTTGCTCTTAGCAAATTTGCTGGAAAAAGGCGCTCCT
GGCGTGGAGAAGGACTCAAGCAGAGCTGCGGAGCTGAGAGAGATTGCCAA
ACAGCGGGAGTCGGGATGGTAA

Coding sequence (CDS) from alignment at tig00000019_pilon:260951..262672+

>Gchil2048.t1 ID=Gchil2048.t1|Name=Gchil2048.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1722bp|location=Sequence derived from alignment at tig00000019_pilon:260951..262672+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCTCGCCAGGACCTCCACACCCCCCGCCTCCTCCGCCACTCATGC
GCACCAGCTCGCACTACGTCGCTCCGCCTCCGACTTCGAGCTGCACCACC
ACATGCATAATCTCGAGACCGCCGCCGCCGACGGCAACCTCGAAGCCATG
GTCACCTTAGCCGCGCTTTGCCTCAACGAATCTGGCACCGTACTGTACGA
CCCGCAACGCGCCGTCCGCCTCTACGAGCGCGCCGCTGGCTCCGGCAGTC
TCGACGCTCTGTACACTCTTGCCTGTCTCTACGAAGACGGTGCTCACAAC
GTCCCGCACAATCCACAGAAAGCAGTGCGTCTGTATGAAACCGCCATTGC
CGGTGGTAGCGCCCAGGCCATGCATGGCTTGGCTCTTCTGTTGGAGGAGG
GAAGCGAATTTGCTGGAGAGGACAGCGTCCCGCCTGATCCCCAGCGCGCT
TTGTGTCTGCACCAGGCTGCCGTCGATGCGGGCAGCCTCGATGCCCTGCA
CAGCCTGGCAAGACTGCTCCGCTACGGCGTGCAAGGCATTGAAAAGGACC
CCAATCGTTCCATCCAAATCTATGAACGCGCCATTGAGCTCGGCAGCAGC
AGCGCCATGAACGACCTGGCCCATCTACTGGAGGACGGTACGGACGACGG
CAAAGTAGATCCTGATGTATTGCGCGCCCGCGAGCTCTATGAACGTGCCA
TTGACGAGGGCCACACCGGCGCCATGTGCAATTTGGCACGCATCTTCCGC
GACGGCAACTCTCAAATTCCCGTTAACACCGAGGCCGCCGCCACCTTGTA
CGAAATGGCTATGAATAATGGCCACAAGTCGGCCATCTGTCCCCTGGCCG
CCATCATGGCCGATGGCTCCCACGATTTTGAGCCCGACATGCAGCGTGCC
ATCGCGCTGTACGAACGCGCTATAGAGGTGGGCGAATCCGACGCCTACTT
CTCACTCGGCTTCCTCATGGAGGAAGGTCGGCCTGACCTCCCACAGGACC
TTGCGCGCGCCATACAATTGTATGAACAAGCCGCCGAGCTGGATGACGTT
CTCGCCATGGATCGTTTGGCGTACCTTCTACTTCATGGAGCCCCGGGCGT
CCAGACCGACCACGAACGTGCCCTGGAGCTTTACGAAAATGCGGCTGATA
TGGGTAGCTCGGCTGCCATGGTCAACCATGCGCTTGTGCTGGAAAGAGGC
ACTGACGAAATTGAAGCCGATCCTCAGAAAGCGTTGGATTTGTTACGCAC
GGCCGCCGACAGAGGTTATCCGGCCGCGCTCCTGAGACTGGCCACTATTG
TGTTGAACGGGGCTTATGGTGAGACGCACGACCCAGAGCACGCTGTTGAC
TTGCTTGAGACCGCTGTGGACCGCGGCTCAACTCCAGCTATGATTCTCTT
GGGTGAACTGCTGGAAGGTGGACAGTACGGAGTGCCCAAGGATCTCACCC
GAGCCGTGGAGCTATACGAAGAGGCTATTGACTATGGCGATACTTCTGCC
GCAAACAAGCTGGGACAGCTTCTTGAGGAGGGGGCCGACGGCGTGCCTCA
AGACGCTGCCAGGGCATTGAAACTATATGAAAGCGCGGCCGATTGCAACA
ATGACGAGGCGTTTTTGCTCTTAGCAAATTTGCTGGAAAAAGGCGCTCCT
GGCGTGGAGAAGGACTCAAGCAGAGCTGCGGAGCTGAGAGAGATTGCCAA
ACAGCGGGAGTCGGGATGGTAA