Gchil7367.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7367.t1
Unique NameGchil7367.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length326
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:711297..712274 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7367Gchil7367Gracilaria chilensis NLEC103_M9 malegenetig00000007_pilon 711297..712274 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7367.t1.start1Gchil7367.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000007_pilon 711297..711299 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7367.t1.CDS1Gchil7367.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 711297..712274 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7367.t1.exon1Gchil7367.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 711297..712274 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7367.t1.stop1Gchil7367.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000007_pilon 712272..712274 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7367.t1Gchil7367.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000007_pilon 711297..712274 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7367.t1 ID=Gchil7367.t1|Name=Gchil7367.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=326bp
MRVAYAPLFVSCNNSYRVLSRTSVACAHRALAFSVIFSVAFSVAFSVIFS
VAFSVAFSVAFSVIFSVSVAFSVAFSVAFSPLAMSFRKTQPAPPPPQPQL
SDKLSSLASKFGAIVDPSAPIPLRSPRKFAPPPRPTPPADAAPHSVHSLA
SRFAADAPPSDPSQVSQQFSTAAAAFRDRENTLAAEQRVAGMARGLDQRV
DKPDSKRVASVARVFESSASAGRYQAPLKRDATTSRTAPSSPRAPVREPP
LPAKEHRAPLLDDREEHEAPRAFGRAKSVQDTAKMFERGVTANSSDTHPD
HTNARQLSADHTHRFKDAAKKFGAS*
back to top

spliced messenger RNA

>Gchil7367.t1 ID=Gchil7367.t1|Name=Gchil7367.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=978bp|location=Sequence derived from alignment at tig00000007_pilon:711297..712274+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGTTGCTTACGCCCCGCTTTTTGTTTCTTGTAACAACTCGTATCG
AGTGCTCTCACGCACCTCCGTTGCGTGCGCCCATCGTGCGCTCGCTTTCT
CTGTCATTTTTTCTGTCGCCTTCTCTGTCGCCTTCTCTGTCATTTTCTCT
GTCGCCTTCTCTGTCGCCTTCTCTGTCGCCTTCTCTGTCATTTTCTCTGT
CTCTGTCGCCTTCTCTGTCGCCTTCTCTGTCGCTTTCTCGCCCCTCGCCA
TGTCGTTCCGAAAGAcgcagcccgcgccgccgccgccgcagccgcagcTC
TCTGATAAGCTCAGTTCGCTGGCGTCCAAGTTCGGCGCCATCGTCGACCC
CAGCGCCCCCATCCCGCTACGCTCCCCCCGCAAGTTCGcccccccaccgc
gtcccaccccccccgccgacgccgccccccACTCCGTACACTCGCTCGCC
TCGCGGTTTGCCGCCGACGCACCCCCCTCCGACCCTTCACAAGTCTCGCA
ACAGTTTTCCACCGCCGCCGCCGCCTTTCGTGACCGCGAGAACACTTTGG
CCGCCGAACAACGCGTCGCTGGCATGGCGCGCGGCCTCGACCAACGCGTC
GACAAACCTGATTCCAAACGCGTCGCCTCCGTCGCACGCGTCTTTGAGAG
TAGCGCTTCGGCGGGACGCTATCAAGCCCCGCTCAAACGAGACGCAACAA
CATCTCGCACCGCCCCGTCGTCTCCGCGCGCCCCCGTCAGGGAGCCGCCG
TTGCCGGCGAAGGAGCATCGCGCTCCGCTTTTGGACGACCGCGAGGAACA
CGAAGCCCCTCGCGCCTTCGGCCGCGCCAAGAGTGTGCAGGATACCGCAA
AGATGTTTGAACGCGGCGTGACGGCTAATTCTTCCGACACCCATCCCGAC
CACACCAACGCGCGCCAACTCTCCGCTGATCACACCCATCGTTTTAAGGA
CGCCGCCAAGAAGTTTGGCGCCTCGTGA
back to top

protein sequence of Gchil7367.t1

>Gchil7367.t1 ID=Gchil7367.t1|Name=Gchil7367.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=326bp
MRVAYAPLFVSCNNSYRVLSRTSVACAHRALAFSVIFSVAFSVAFSVIFS
VAFSVAFSVAFSVIFSVSVAFSVAFSVAFSPLAMSFRKTQPAPPPPQPQL
SDKLSSLASKFGAIVDPSAPIPLRSPRKFAPPPRPTPPADAAPHSVHSLA
SRFAADAPPSDPSQVSQQFSTAAAAFRDRENTLAAEQRVAGMARGLDQRV
DKPDSKRVASVARVFESSASAGRYQAPLKRDATTSRTAPSSPRAPVREPP
LPAKEHRAPLLDDREEHEAPRAFGRAKSVQDTAKMFERGVTANSSDTHPD
HTNARQLSADHTHRFKDAAKKFGAS*
back to top

mRNA from alignment at tig00000007_pilon:711297..712274+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7367.t1 ID=Gchil7367.t1|Name=Gchil7367.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=978bp|location=Sequence derived from alignment at tig00000007_pilon:711297..712274+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGCGTTGCTTACGCCCCGCTTTTTGTTTCTTGTAACAACTCGTATCG
AGTGCTCTCACGCACCTCCGTTGCGTGCGCCCATCGTGCGCTCGCTTTCT
CTGTCATTTTTTCTGTCGCCTTCTCTGTCGCCTTCTCTGTCATTTTCTCT
GTCGCCTTCTCTGTCGCCTTCTCTGTCGCCTTCTCTGTCATTTTCTCTGT
CTCTGTCGCCTTCTCTGTCGCCTTCTCTGTCGCTTTCTCGCCCCTCGCCA
TGTCGTTCCGAAAGAcgcagcccgcgccgccgccgccgcagccgcagcTC
TCTGATAAGCTCAGTTCGCTGGCGTCCAAGTTCGGCGCCATCGTCGACCC
CAGCGCCCCCATCCCGCTACGCTCCCCCCGCAAGTTCGcccccccaccgc
gtcccaccccccccgccgacgccgccccccACTCCGTACACTCGCTCGCC
TCGCGGTTTGCCGCCGACGCACCCCCCTCCGACCCTTCACAAGTCTCGCA
ACAGTTTTCCACCGCCGCCGCCGCCTTTCGTGACCGCGAGAACACTTTGG
CCGCCGAACAACGCGTCGCTGGCATGGCGCGCGGCCTCGACCAACGCGTC
GACAAACCTGATTCCAAACGCGTCGCCTCCGTCGCACGCGTCTTTGAGAG
TAGCGCTTCGGCGGGACGCTATCAAGCCCCGCTCAAACGAGACGCAACAA
CATCTCGCACCGCCCCGTCGTCTCCGCGCGCCCCCGTCAGGGAGCCGCCG
TTGCCGGCGAAGGAGCATCGCGCTCCGCTTTTGGACGACCGCGAGGAACA
CGAAGCCCCTCGCGCCTTCGGCCGCGCCAAGAGTGTGCAGGATACCGCAA
AGATGTTTGAACGCGGCGTGACGGCTAATTCTTCCGACACCCATCCCGAC
CACACCAACGCGCGCCAACTCTCCGCTGATCACACCCATCGTTTTAAGGA
CGCCGCCAAGAAGTTTGGCGCCTCGTGA
back to top

Coding sequence (CDS) from alignment at tig00000007_pilon:711297..712274+

>Gchil7367.t1 ID=Gchil7367.t1|Name=Gchil7367.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=978bp|location=Sequence derived from alignment at tig00000007_pilon:711297..712274+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGCGTTGCTTACGCCCCGCTTTTTGTTTCTTGTAACAACTCGTATCG
AGTGCTCTCACGCACCTCCGTTGCGTGCGCCCATCGTGCGCTCGCTTTCT
CTGTCATTTTTTCTGTCGCCTTCTCTGTCGCCTTCTCTGTCATTTTCTCT
GTCGCCTTCTCTGTCGCCTTCTCTGTCGCCTTCTCTGTCATTTTCTCTGT
CTCTGTCGCCTTCTCTGTCGCCTTCTCTGTCGCTTTCTCGCCCCTCGCCA
TGTCGTTCCGAAAGAcgcagcccgcgccgccgccgccgcagccgcagcTC
TCTGATAAGCTCAGTTCGCTGGCGTCCAAGTTCGGCGCCATCGTCGACCC
CAGCGCCCCCATCCCGCTACGCTCCCCCCGCAAGTTCGcccccccaccgc
gtcccaccccccccgccgacgccgccccccACTCCGTACACTCGCTCGCC
TCGCGGTTTGCCGCCGACGCACCCCCCTCCGACCCTTCACAAGTCTCGCA
ACAGTTTTCCACCGCCGCCGCCGCCTTTCGTGACCGCGAGAACACTTTGG
CCGCCGAACAACGCGTCGCTGGCATGGCGCGCGGCCTCGACCAACGCGTC
GACAAACCTGATTCCAAACGCGTCGCCTCCGTCGCACGCGTCTTTGAGAG
TAGCGCTTCGGCGGGACGCTATCAAGCCCCGCTCAAACGAGACGCAACAA
CATCTCGCACCGCCCCGTCGTCTCCGCGCGCCCCCGTCAGGGAGCCGCCG
TTGCCGGCGAAGGAGCATCGCGCTCCGCTTTTGGACGACCGCGAGGAACA
CGAAGCCCCTCGCGCCTTCGGCCGCGCCAAGAGTGTGCAGGATACCGCAA
AGATGTTTGAACGCGGCGTGACGGCTAATTCTTCCGACACCCATCCCGAC
CACACCAACGCGCGCCAACTCTCCGCTGATCACACCCATCGTTTTAAGGA
CGCCGCCAAGAAGTTTGGCGCCTCGTGA
back to top