Gchil2037.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2037.t1
Unique NameGchil2037.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length482
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000019_piloncontigtig00000019_pilon:232450..233895 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1540221.JQNI01000004_gene346
PFAMsKelch_1,Malectin,NPCBM
Max annot lvl1297|Deinococcus-Thermus
Evalue3.74e-47
EggNOG OGsCOG1470@1|root,COG2982@1|root,COG3055@1|root,COG3401@1|root,COG1470@2|Bacteria,COG2982@2|Bacteria,COG3055@2|Bacteria,COG3401@2|Bacteria,1WM1P@1297|Deinococcus-Thermus
DescriptionKelch
COG categoryG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2037Gchil2037Gracilaria chilensis NLEC103_M9 malegenetig00000019_pilon 232450..233895 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2037.t1.stop1Gchil2037.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000019_pilon 232450..232452 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2037.t1.CDS1Gchil2037.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000019_pilon 232450..233895 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2037.t1.exon1Gchil2037.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000019_pilon 232450..233895 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2037.t1.start1Gchil2037.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000019_pilon 233893..233895 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2037.t1Gchil2037.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000019_pilon 232450..233895 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2037.t1 ID=Gchil2037.t1|Name=Gchil2037.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=482bp
MARARSSVALPCVATCNAWRAFSGRACSHGACARRELALRIDTLPTHPSR
RQRLVVARQRRVMPRRALSVRCAHASPRQCPSLQLLRSTLLVPPAVGARL
LRPGQRLVVSLPASLLLLLITAPDMTASRALNLTLTLTLALALALAAFVT
PCAAADALAPRLLPPAWLSHPQYPLSVFEASGAVVRLSPPAQYLIVAGGY
VSDSALTPTSSVHALHVSARPERWTRLRDMPRPLTHCAQAVVADSLYLCG
GFLGKAPGQSVSDCYVFSMSLNQWKPIPSLPVSVGGGAMVYIKPINALFY
AGGMTREKGRYRGTDLPHTFMLSLHNLAAGWKRKADMPNPRNHMAAAVAA
SRYFFLGGQHSADEHAGNQPTVNEYVYWSDKWFTKAPLPQPLGHIVASTF
SYWNGILVVGGVTNGRHQTPNVYYYDVRSDSWSLIGQFPRSVQSPVCGIS
NLRIHCATGLGKPGWAAQSFHRKLTLPLPVQ*
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spliced messenger RNA

>Gchil2037.t1 ID=Gchil2037.t1|Name=Gchil2037.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1446bp|location=Sequence derived from alignment at tig00000019_pilon:232450..233895- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCGTGCGCGCTCCAGCGTCGCGTTGCCGTGCGTGGCCACGTGCAA
CGCGTGGCGCGCTTTCAGTGGGCGTGCGTGCAGCCACGGCGCGTGCGCGC
GCCGTGAGCTGGCGCTGCGCATTGATACGCTGCCGACGCATCCTTCTCGT
CGGCAGCGACTCGTCGTAGCACGCCAGCGTCGTGTCATGCCGCGCCGCGC
CCTTTCAGTGCGGTGCGCACACGCATCGCCGCGGCAGTGCCCGAGTCTGC
AGCTCTTGCGTAGCACTTTGCTCGTGCCCCCGGCTGTTGGAGCCCGTCTC
TTGCGCCCTGGTCAACGCCTTGTCGTGTCTCTACCCGCGTCGCTTCTGTT
GCTCCTCATCACCGCCCCCGACATGACCGCTTCCCGTGCCCTCAATCTCA
CCCTCACCCTCACCCTCGCGCTCGCGCTTGCGCTCGCTGCGTTCGTCACC
CCCTGCGCCGCCGCAGACGCGCTGGCGCCCAGGCTGCTGCCGCCCGCTTG
GCTGTCGCACCCCCAGTATCCCCTCTCCGTGTTTGAGGCCTCAGGCGCCG
TTGTGCGCCTCTCACCGCCCGCACAATACCTCATCGTCGCCGGCGGTTAC
GTCTCCGACTCTGCACTCACCCCCACGTCGAGCGTCCATGCGCTCCATGT
CTCGGCGCGCCCCGAGCGTTGGACGCGTCTCCGCGACATGCCGCGTCCAC
TCACTCACTGTGCCCAGGCTGTTGTTGCAGACTCGCTCTATCTCTGCGGC
GGATTTCTCGGAAAAGCCCCCGGCCAGTCTGTCTCCGACTGCTACGTGTT
TTCCATGTCCCTCAACCAGTGGAAACCCATTCCGAGCCTGCCTGTTTCCG
TCGGTGGTGGTGCCATGGTGTACATCAAGCCCATCAACGCTCTGTTTTAT
GCAGGTGGTATGACTCGCGAAAAAGGCCGCTATCGCGGAACTGACCTGCC
CCATACATTCATGTTATCCTTGCACAACCTCGCCGCGGGCTGGAAGCGGA
AGGCAGACATGCCCAACCCGCGCAACCACATGGCCGCCGCCGTCGCCGCT
TCGCGCTACTTTTTTCTGGGCGGCCAGCACTCGGCCGACGAGCACGCGGG
CAATCAGCCCACCGTTAACGAATACGTATACTGGAGCGATAAGTGGTTCA
CAAAAGCGCCCCTTCCACAGCCATTAGGCCACATTGTCGCAAGCACCTTT
TCGTATTGGAACGGAATCCTGGTCGTGGGAGGTGTCACCAACGGCCGCCA
CCAAACCCCGAACGTCTACTACTATGATGTGCGCTCCGATTCCTGGTCGC
TCATTGGCCAATTTCCCCGAAGTGTACAAAGCCCTGTTTGCGGTATTTCG
AATCTCCGCATTCATTGCGCTACCGGTCTCGGAAAACCGGGCTGGGCTGC
CCAGAGCTTTCACCGCAAACTCACTCTCCCTCTCCCTGTTCAATGA
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protein sequence of Gchil2037.t1

>Gchil2037.t1 ID=Gchil2037.t1|Name=Gchil2037.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=482bp
MARARSSVALPCVATCNAWRAFSGRACSHGACARRELALRIDTLPTHPSR
RQRLVVARQRRVMPRRALSVRCAHASPRQCPSLQLLRSTLLVPPAVGARL
LRPGQRLVVSLPASLLLLLITAPDMTASRALNLTLTLTLALALALAAFVT
PCAAADALAPRLLPPAWLSHPQYPLSVFEASGAVVRLSPPAQYLIVAGGY
VSDSALTPTSSVHALHVSARPERWTRLRDMPRPLTHCAQAVVADSLYLCG
GFLGKAPGQSVSDCYVFSMSLNQWKPIPSLPVSVGGGAMVYIKPINALFY
AGGMTREKGRYRGTDLPHTFMLSLHNLAAGWKRKADMPNPRNHMAAAVAA
SRYFFLGGQHSADEHAGNQPTVNEYVYWSDKWFTKAPLPQPLGHIVASTF
SYWNGILVVGGVTNGRHQTPNVYYYDVRSDSWSLIGQFPRSVQSPVCGIS
NLRIHCATGLGKPGWAAQSFHRKLTLPLPVQ*
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mRNA from alignment at tig00000019_pilon:232450..233895-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2037.t1 ID=Gchil2037.t1|Name=Gchil2037.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1446bp|location=Sequence derived from alignment at tig00000019_pilon:232450..233895- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCGTGCGCGCTCCAGCGTCGCGTTGCCGTGCGTGGCCACGTGCAA
CGCGTGGCGCGCTTTCAGTGGGCGTGCGTGCAGCCACGGCGCGTGCGCGC
GCCGTGAGCTGGCGCTGCGCATTGATACGCTGCCGACGCATCCTTCTCGT
CGGCAGCGACTCGTCGTAGCACGCCAGCGTCGTGTCATGCCGCGCCGCGC
CCTTTCAGTGCGGTGCGCACACGCATCGCCGCGGCAGTGCCCGAGTCTGC
AGCTCTTGCGTAGCACTTTGCTCGTGCCCCCGGCTGTTGGAGCCCGTCTC
TTGCGCCCTGGTCAACGCCTTGTCGTGTCTCTACCCGCGTCGCTTCTGTT
GCTCCTCATCACCGCCCCCGACATGACCGCTTCCCGTGCCCTCAATCTCA
CCCTCACCCTCACCCTCGCGCTCGCGCTTGCGCTCGCTGCGTTCGTCACC
CCCTGCGCCGCCGCAGACGCGCTGGCGCCCAGGCTGCTGCCGCCCGCTTG
GCTGTCGCACCCCCAGTATCCCCTCTCCGTGTTTGAGGCCTCAGGCGCCG
TTGTGCGCCTCTCACCGCCCGCACAATACCTCATCGTCGCCGGCGGTTAC
GTCTCCGACTCTGCACTCACCCCCACGTCGAGCGTCCATGCGCTCCATGT
CTCGGCGCGCCCCGAGCGTTGGACGCGTCTCCGCGACATGCCGCGTCCAC
TCACTCACTGTGCCCAGGCTGTTGTTGCAGACTCGCTCTATCTCTGCGGC
GGATTTCTCGGAAAAGCCCCCGGCCAGTCTGTCTCCGACTGCTACGTGTT
TTCCATGTCCCTCAACCAGTGGAAACCCATTCCGAGCCTGCCTGTTTCCG
TCGGTGGTGGTGCCATGGTGTACATCAAGCCCATCAACGCTCTGTTTTAT
GCAGGTGGTATGACTCGCGAAAAAGGCCGCTATCGCGGAACTGACCTGCC
CCATACATTCATGTTATCCTTGCACAACCTCGCCGCGGGCTGGAAGCGGA
AGGCAGACATGCCCAACCCGCGCAACCACATGGCCGCCGCCGTCGCCGCT
TCGCGCTACTTTTTTCTGGGCGGCCAGCACTCGGCCGACGAGCACGCGGG
CAATCAGCCCACCGTTAACGAATACGTATACTGGAGCGATAAGTGGTTCA
CAAAAGCGCCCCTTCCACAGCCATTAGGCCACATTGTCGCAAGCACCTTT
TCGTATTGGAACGGAATCCTGGTCGTGGGAGGTGTCACCAACGGCCGCCA
CCAAACCCCGAACGTCTACTACTATGATGTGCGCTCCGATTCCTGGTCGC
TCATTGGCCAATTTCCCCGAAGTGTACAAAGCCCTGTTTGCGGTATTTCG
AATCTCCGCATTCATTGCGCTACCGGTCTCGGAAAACCGGGCTGGGCTGC
CCAGAGCTTTCACCGCAAACTCACTCTCCCTCTCCCTGTTCAATGA
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Coding sequence (CDS) from alignment at tig00000019_pilon:232450..233895-

>Gchil2037.t1 ID=Gchil2037.t1|Name=Gchil2037.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1446bp|location=Sequence derived from alignment at tig00000019_pilon:232450..233895- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCGTGCGCGCTCCAGCGTCGCGTTGCCGTGCGTGGCCACGTGCAA
CGCGTGGCGCGCTTTCAGTGGGCGTGCGTGCAGCCACGGCGCGTGCGCGC
GCCGTGAGCTGGCGCTGCGCATTGATACGCTGCCGACGCATCCTTCTCGT
CGGCAGCGACTCGTCGTAGCACGCCAGCGTCGTGTCATGCCGCGCCGCGC
CCTTTCAGTGCGGTGCGCACACGCATCGCCGCGGCAGTGCCCGAGTCTGC
AGCTCTTGCGTAGCACTTTGCTCGTGCCCCCGGCTGTTGGAGCCCGTCTC
TTGCGCCCTGGTCAACGCCTTGTCGTGTCTCTACCCGCGTCGCTTCTGTT
GCTCCTCATCACCGCCCCCGACATGACCGCTTCCCGTGCCCTCAATCTCA
CCCTCACCCTCACCCTCGCGCTCGCGCTTGCGCTCGCTGCGTTCGTCACC
CCCTGCGCCGCCGCAGACGCGCTGGCGCCCAGGCTGCTGCCGCCCGCTTG
GCTGTCGCACCCCCAGTATCCCCTCTCCGTGTTTGAGGCCTCAGGCGCCG
TTGTGCGCCTCTCACCGCCCGCACAATACCTCATCGTCGCCGGCGGTTAC
GTCTCCGACTCTGCACTCACCCCCACGTCGAGCGTCCATGCGCTCCATGT
CTCGGCGCGCCCCGAGCGTTGGACGCGTCTCCGCGACATGCCGCGTCCAC
TCACTCACTGTGCCCAGGCTGTTGTTGCAGACTCGCTCTATCTCTGCGGC
GGATTTCTCGGAAAAGCCCCCGGCCAGTCTGTCTCCGACTGCTACGTGTT
TTCCATGTCCCTCAACCAGTGGAAACCCATTCCGAGCCTGCCTGTTTCCG
TCGGTGGTGGTGCCATGGTGTACATCAAGCCCATCAACGCTCTGTTTTAT
GCAGGTGGTATGACTCGCGAAAAAGGCCGCTATCGCGGAACTGACCTGCC
CCATACATTCATGTTATCCTTGCACAACCTCGCCGCGGGCTGGAAGCGGA
AGGCAGACATGCCCAACCCGCGCAACCACATGGCCGCCGCCGTCGCCGCT
TCGCGCTACTTTTTTCTGGGCGGCCAGCACTCGGCCGACGAGCACGCGGG
CAATCAGCCCACCGTTAACGAATACGTATACTGGAGCGATAAGTGGTTCA
CAAAAGCGCCCCTTCCACAGCCATTAGGCCACATTGTCGCAAGCACCTTT
TCGTATTGGAACGGAATCCTGGTCGTGGGAGGTGTCACCAACGGCCGCCA
CCAAACCCCGAACGTCTACTACTATGATGTGCGCTCCGATTCCTGGTCGC
TCATTGGCCAATTTCCCCGAAGTGTACAAAGCCCTGTTTGCGGTATTTCG
AATCTCCGCATTCATTGCGCTACCGGTCTCGGAAAACCGGGCTGGGCTGC
CCAGAGCTTTCACCGCAAACTCACTCTCCCTCTCCCTGTTCAATGA
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