Gchil7702.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7702.t1
Unique NameGchil7702.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length84
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00025321_piloncontigtig00025321_pilon:421801..422790 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7702Gchil7702Gracilaria chilensis NLEC103_M9 malegenetig00025321_pilon 421801..422790 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7702.t1Gchil7702.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00025321_pilon 421801..422790 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7702.t1.start1Gchil7702.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00025321_pilon 421801..421803 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7702.t1.CDS1Gchil7702.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00025321_pilon 421801..421993 +
Gchil7702.t1.CDS2Gchil7702.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00025321_pilon 422732..422790 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7702.t1.exon1Gchil7702.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00025321_pilon 421801..421993 +
Gchil7702.t1.exon2Gchil7702.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00025321_pilon 422732..422790 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7702.t1.intron1Gchil7702.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00025321_pilon 421994..422731 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7702.t1.stop1Gchil7702.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00025321_pilon 422788..422790 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7702.t1 ID=Gchil7702.t1|Name=Gchil7702.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=84bp
MERSPTGDDVVEEIARHVEGNDIGIPVDGPLPRRKWTRSVAIVLATQKGF
EVCDDRGEAVGFVGVIPIESDTLIDGVLLVDEE*
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spliced messenger RNA

>Gchil7702.t1 ID=Gchil7702.t1|Name=Gchil7702.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=252bp|location=Sequence derived from alignment at tig00025321_pilon:421801..422790+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAACGTAGCCCCACGGGTGATGACGTTGTTGAAGAAATTGCCAGGCA
TGTTGAAGGGAACGATATCGGCATCCCAGTTGATGGACCGCTGCCCAGAC
GGAAGTGGACCCGGAGTGTTGCCATTGTTCTCGCCACCCAAAAGGGTTTT
GAAGTCTGCGACGACCGAGGTGAGGCCGTCGGCTTTGTGGGCGTCATACC
AATTGAGAGCGATACTCTAATCGATGGAGTATTGTTGGTCGACGAGGAGT
AA
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protein sequence of Gchil7702.t1

>Gchil7702.t1 ID=Gchil7702.t1|Name=Gchil7702.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=84bp
MERSPTGDDVVEEIARHVEGNDIGIPVDGPLPRRKWTRSVAIVLATQKGF
EVCDDRGEAVGFVGVIPIESDTLIDGVLLVDEE*
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mRNA from alignment at tig00025321_pilon:421801..422790+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7702.t1 ID=Gchil7702.t1|Name=Gchil7702.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=990bp|location=Sequence derived from alignment at tig00025321_pilon:421801..422790+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAACGTAGCCCCACGGGTGATGACGTTGTTGAAGAAATTGCCAGGCA
TGTTGAAGGGAACGATATCGGCATCCCAGTTGATGGACCGCTGCCCAGAC
GGAAGTGGACCCGGAGTGTTGCCATTGTTCTCGCCACCCAAAAGGGTTTT
GAAGTCTGCGACGACCGAGGTGAGGCCGTCGGCTTTGTGGGCGGTATGTG
TGAGGACCTCAGTGTGGTACTGCGGGCATCGCTTCTGCGAGGCAAGGGAA
CACACTAAGAAGCTAGAGAGCCAAAGGGTAAGGATCACTGACTTCATGTT
GGTGCAGCTAGCAGAACTTTTGAGCTCGAATAACGCTGGTTATGACCTGA
GTTGTAGATGCGGTAGAGTTGGGAGATGTTGTGCTTGGGGGGAAGGAGAT
ACGGAAAGCTGCAACGATCGTCTCTTTATACAAGTGCGCTCCGGTCAAAG
CGGGCGCAATACTCGGTGGCGCTCATGCCGTTCGCCAGTTCGTGAGAATA
CTGAGCTGGGGCGCTTTGAATGCCGTGGTCCTCTTCAACAATGATCTCGA
TCGCGGGGGATGAAGGATACTACGAAGCACAAAGAAACAGTCGCAAATTG
CCCACTGGTGGTACATACCCACTTTGGCAACAGTCCTTCCGCAAACATAC
GTGGACTGTGTTGCAGATTCTGACGTCAGCGCTCCACCGTGATTGGCGTG
GATACGGAAACGTGGTGGCAAGTGGCGATGCATCTGTGCAGCCTCTGCAT
TGCTGCCCGCTTGTGGGCGACTCAGTAATGGTGGCGTCCTCTGCAGCATC
AGCTTGAAGCCGGGCCGCATCTCACTGTTCTCCTCCGTGGCCCGACCTGC
AGCTGCATTGAATCGCCATTCAACAACCCCAGTTGAATCGAATGGGTCAT
TACTTCACCCATTTCTTCTGCGAGCCGCCAGTCATACCAATTGAGAGCGA
TACTCTAATCGATGGAGTATTGTTGGTCGACGAGGAGTAA
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Coding sequence (CDS) from alignment at tig00025321_pilon:421801..422790+

>Gchil7702.t1 ID=Gchil7702.t1|Name=Gchil7702.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=252bp|location=Sequence derived from alignment at tig00025321_pilon:421801..422790+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAACGTAGCCCCACGGGTGATGACGTTGTTGAAGAAATTGCCAGGCA
TGTTGAAGGGAACGATATCGGCATCCCAGTTGATGGACCGCTGCCCAGAC
GGAAGTGGACCCGGAGTGTTGCCATTGTTCTCGCCACCCAAAAGGGTTTT
GAAGTCTGCGACGACCGAGGTGAGGCCGTCGGCTTTGTGGGCGTCATACC
AATTGAGAGCGATACTCTAATCGATGGAGTATTGTTGGTCGACGAGGAGT
AA
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