Gchil7718.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7718.t1
Unique NameGchil7718.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length198
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00025321_piloncontigtig00025321_pilon:505148..505861 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3641.EOY13712
Preferred nameUBP25
PFAMsUCH
Max annot lvl35493|Streptophyta
KEGG koko:K11855
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0022626,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:1990904
Evalue9.67e-18
EggNOG OGsKOG1865@1|root,KOG1865@2759|Eukaryota,37PT6@33090|Viridiplantae,3GFXA@35493|Streptophyta
EC3.4.19.12
DescriptionBelongs to the peptidase C19 family
COG categoryO
BRITEko00000,ko01000,ko01002,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7718Gchil7718Gracilaria chilensis NLEC103_M9 malegenetig00025321_pilon 505148..505861 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7718.t1Gchil7718.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00025321_pilon 505148..505861 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7718.t1.start1Gchil7718.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00025321_pilon 505148..505150 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7718.t1.CDS1Gchil7718.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00025321_pilon 505148..505307 +
Gchil7718.t1.CDS2Gchil7718.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00025321_pilon 505428..505861 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7718.t1.exon1Gchil7718.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00025321_pilon 505148..505307 +
Gchil7718.t1.exon2Gchil7718.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00025321_pilon 505428..505861 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7718.t1.intron1Gchil7718.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00025321_pilon 505308..505427 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7718.t1.stop1Gchil7718.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00025321_pilon 505859..505861 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7718.t1 ID=Gchil7718.t1|Name=Gchil7718.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=198bp
MQKLSPLFVDDREQDADTFIQMLFQSINQIQCHGCPDLVEKEDGYKNGIG
PILAESLADPMHEIFIEGEKLYTPQRCMEHPDSKTKMYFKKTPNLLIVKL
NRFLADGKNGSFIEYDQDLKLSSCRNEPTTSKKYNLIGVLTRHGPSIRSG
HYTADVKSLNGKWYHIDDEKVSEIKVSSAMSKKAFILLYEKRMPLSE*
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spliced messenger RNA

>Gchil7718.t1 ID=Gchil7718.t1|Name=Gchil7718.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=594bp|location=Sequence derived from alignment at tig00025321_pilon:505148..505861+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAAAACTATCCCCACTCTTTGTCGACGACCGAGAACAAGACGCTGA
TACTTTCATACAGATGCTTTTCCAGTCTATTAATCAGATTCAATGTCACG
GTTGCCCTGATCTTGTTGAAAAAGAAGATGGATACAAAAACGGAATCGGA
CCGATTCTAGCCGAATCATTGGCCGATCCAATGCACGAAATCTTCATCGA
AGGCGAAAAGCTTTACACTCCGCAACGCTGCATGGAGCATCCTGATTCTA
AAACTAAGATGTACTTCAAGAAAACTCCGAACTTACTGATTGTGAAGCTA
AACAGGTTTTTGGCGGATGGAAAAAATGGATCTTTTATTGAATACGACCA
GGACCTAAAACTGAGTTCATGTAGGAATGAACCGACTACTTCGAAAAAGT
ATAATCTTATTGGCGTGCTCACGCGCCATGGACCATCCATAAGATCAGGT
CATTACACAGCTGATGTTAAAAGTTTGAATGGGAAATGGTATCACATCGA
TGATGAGAAGGTCTCGGAGATTAAGGTTAGCTCCGCGATGAGCAAAAAAG
CCTTCATCCTGCTCTATGAAAAAAGAATGCCTTTATCAGAATAA
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protein sequence of Gchil7718.t1

>Gchil7718.t1 ID=Gchil7718.t1|Name=Gchil7718.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=198bp
MQKLSPLFVDDREQDADTFIQMLFQSINQIQCHGCPDLVEKEDGYKNGIG
PILAESLADPMHEIFIEGEKLYTPQRCMEHPDSKTKMYFKKTPNLLIVKL
NRFLADGKNGSFIEYDQDLKLSSCRNEPTTSKKYNLIGVLTRHGPSIRSG
HYTADVKSLNGKWYHIDDEKVSEIKVSSAMSKKAFILLYEKRMPLSE*
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mRNA from alignment at tig00025321_pilon:505148..505861+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7718.t1 ID=Gchil7718.t1|Name=Gchil7718.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=714bp|location=Sequence derived from alignment at tig00025321_pilon:505148..505861+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAAAAACTATCCCCACTCTTTGTCGACGACCGAGAACAAGACGCTGA
TACTTTCATACAGATGCTTTTCCAGTCTATTAATCAGATTCAATGTCACG
GTTGCCCTGATCTTGTTGAAAAAGAAGATGGATACAAAAACGGAATCGGA
CCGATTCTAGGTATGACTTGTTTTGGGAGTATAGAGACTCAAATTTGTTG
TGATTCTTGCCCGTATTCCGCGACGAGGCCGAATCCTTTCTGTTATATTT
CCATTGATATTCGATGCACCAAACCAATAGCCGAATCATTGGCCGATCCA
ATGCACGAAATCTTCATCGAAGGCGAAAAGCTTTACACTCCGCAACGCTG
CATGGAGCATCCTGATTCTAAAACTAAGATGTACTTCAAGAAAACTCCGA
ACTTACTGATTGTGAAGCTAAACAGGTTTTTGGCGGATGGAAAAAATGGA
TCTTTTATTGAATACGACCAGGACCTAAAACTGAGTTCATGTAGGAATGA
ACCGACTACTTCGAAAAAGTATAATCTTATTGGCGTGCTCACGCGCCATG
GACCATCCATAAGATCAGGTCATTACACAGCTGATGTTAAAAGTTTGAAT
GGGAAATGGTATCACATCGATGATGAGAAGGTCTCGGAGATTAAGGTTAG
CTCCGCGATGAGCAAAAAAGCCTTCATCCTGCTCTATGAAAAAAGAATGC
CTTTATCAGAATAA
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Coding sequence (CDS) from alignment at tig00025321_pilon:505148..505861+

>Gchil7718.t1 ID=Gchil7718.t1|Name=Gchil7718.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=594bp|location=Sequence derived from alignment at tig00025321_pilon:505148..505861+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAAAAACTATCCCCACTCTTTGTCGACGACCGAGAACAAGACGCTGA
TACTTTCATACAGATGCTTTTCCAGTCTATTAATCAGATTCAATGTCACG
GTTGCCCTGATCTTGTTGAAAAAGAAGATGGATACAAAAACGGAATCGGA
CCGATTCTAGCCGAATCATTGGCCGATCCAATGCACGAAATCTTCATCGA
AGGCGAAAAGCTTTACACTCCGCAACGCTGCATGGAGCATCCTGATTCTA
AAACTAAGATGTACTTCAAGAAAACTCCGAACTTACTGATTGTGAAGCTA
AACAGGTTTTTGGCGGATGGAAAAAATGGATCTTTTATTGAATACGACCA
GGACCTAAAACTGAGTTCATGTAGGAATGAACCGACTACTTCGAAAAAGT
ATAATCTTATTGGCGTGCTCACGCGCCATGGACCATCCATAAGATCAGGT
CATTACACAGCTGATGTTAAAAGTTTGAATGGGAAATGGTATCACATCGA
TGATGAGAAGGTCTCGGAGATTAAGGTTAGCTCCGCGATGAGCAAAAAAG
CCTTCATCCTGCTCTATGAAAAAAGAATGCCTTTATCAGAATAA
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