Gchil3707.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3707.t1
Unique Name	Gchil3707.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	386

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00025222_pilon	contig	tig00025222_pilon:714782..715939 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703068.1
PFAMs	S-AdoMet_synt_C,S-AdoMet_synt_M,S-AdoMet_synt_N
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00021,RC01211
KEGG ko	ko:K00789
KEGG Reaction	R00177,R04771
KEGG Pathway	ko00270,ko01100,ko01110,ko01230,map00270,map01100,map01110,map01230
KEGG Module	M00034,M00035,M00368,M00609
GOs	GO:0003674,GO:0003824,GO:0004478,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0016740,GO:0016765,GO:0044424,GO:0044444,GO:0044464
Evalue	5.77e-231
EggNOG OGs	COG0192@1\|root,KOG1506@2759\|Eukaryota
EC	2.5.1.6
Description	methionine adenosyltransferase activity
COG category	H
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3707	Gchil3707	Gracilaria chilensis NLEC103_M9 male	gene	tig00025222_pilon 714782..715939 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3707.t1.stop1	Gchil3707.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00025222_pilon 714782..714784 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3707.t1.CDS1	Gchil3707.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00025222_pilon 714782..715939 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3707.t1.exon1	Gchil3707.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00025222_pilon 714782..715939 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3707.t1.start1	Gchil3707.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00025222_pilon 715937..715939 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3707.t1	Gchil3707.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00025222_pilon 714782..715939 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00025222_pilon:714782..715939-
coding sequence from alignment at tig00025222_pilon:714782..715939-

mRNA sequence

>Gchil3707.t1 ID=Gchil3707.t1|Name=Gchil3707.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=386bp
MANSFLFTSESVNEGHPDKLCDQVSDAVLDVCLEQDPWSKVACETASKTG
MVMCFGEITTKAKINYEQVIRDAIQKIGFDAEEKGLDYKTCRVLVELHAQ
SPDIAQGVHEGRTAEDVGAGDQGIMFGYATNESPDYMPLTSSFANKLGFR
LTEVRKSGVCPWVRPDGKTQVTMEYSKSPEGKLTPVRVHTILISTQHDEG
VSNEKIRADLMEKVIKEVIPDKYLDDDTIYHLNPSGRFVIGGPEGDAGLT
GRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSAAYAGRWVAKSVVAADLAD
RCLVQVSYGIGIAEPLSIFVDTFGTGKKTDAEITDIVKKNFDLRPGRIIR
DLDLLRPIYSKTAAYGHFGRDDDDFTWEKPKKLEF*

spliced messenger RNA

>Gchil3707.t1 ID=Gchil3707.t1|Name=Gchil3707.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1158bp|location=Sequence derived from alignment at tig00025222_pilon:714782..715939- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCAATTCGTTTTTGTTCACGAGTGAGTCTGTCAATGAGGGTCACCC
CGATAAGCTCTGTGACCAGGTCTCCGACGCCGTTTTGGACGTCTGCCTCG
AGCAGGACCCCTGGTCCAAGGTTGCCTGTGAGACCGCCTCGAAGACCGGC
ATGGTAATGTGCTTTGGTGAGATTACCACCAAGGCAAAGATCAATTACGA
GCAGGTCATCCGTGACGCCATCCAGAAGATTGGCTTCGACGCCGAGGAAA
AGGGTCTGGACTACAAGACCTGCCGCGTTCTCGTCGAACTCCACGCCCAG
AGCCCCGACATCGCACAGGGCGTCCACGAGGGCCGTACCGCCGAGGACGT
CGGCGCCGGTGACCAGGGCATCATGTTCGGCTATGCCACCAACGAGTCAC
CGGATTACATGCCGCTCACGTCCTCCTTTGCCAACAAGCTAGGCTTCCGC
CTCACTGAGGTGCGCAAGTCCGGCGTCTGCCCTTGGGTCCGCCCAGACGG
CAAGACACAGGTCACCATGGAGTACAGCAAGTCGCCCGAAGGTAAGCTCA
CCCCGGTGCGCGTCCACACCATTCTCATTTCCACTCAGCATGATGAAGGT
GTGTCCAACGAAAAGATCCGCGCTGATCTTATGGAAAAGGTTATCAAGGA
GGTCATTCCGGACAAGTACTTGGATGACGACACCATTTACCATCTCAACC
CTTCTGGTCGTTTCGTCATTGGTGGTCCCGAAGGTGATGCCGGCCTCACT
GGCCGTAAAATCATCATTGACACCTATGGTGGTTGGGGAGCCCATGGTGG
TGGTGCCTTCTCCGGCAAGGACCCCACCAAGGTCGACCGTTCAGCTGCCT
ATGCTGGGCGCTGGGTGGCCAAGTCTGTGGTCGCTGCCGATTTGGCTGAC
CGCTGCCTGGTTCAGGTTTCGTACGGTATTGGTATCGCCGAACCCCTGTC
TATCTTTGTTGACACCTTTGGCACTGGCAAGAAGACAGACGCTGAAATTA
CCGATATCGTCAAGAAGAACTTCGACCTTCGCCCGGGCCGCATCATCCGT
GACCTTGACCTGCTCCGTCCCATCTATTCTAAGACGGCCGCCTACGGTCA
CTTTGGTCGTGACGATGATGACTTCACCTGGGAGAAGCCGAAGAAGCTTG
AATTCTAA

protein sequence of Gchil3707.t1

>Gchil3707.t1 ID=Gchil3707.t1|Name=Gchil3707.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=386bp
MANSFLFTSESVNEGHPDKLCDQVSDAVLDVCLEQDPWSKVACETASKTG
MVMCFGEITTKAKINYEQVIRDAIQKIGFDAEEKGLDYKTCRVLVELHAQ
SPDIAQGVHEGRTAEDVGAGDQGIMFGYATNESPDYMPLTSSFANKLGFR
LTEVRKSGVCPWVRPDGKTQVTMEYSKSPEGKLTPVRVHTILISTQHDEG
VSNEKIRADLMEKVIKEVIPDKYLDDDTIYHLNPSGRFVIGGPEGDAGLT
GRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSAAYAGRWVAKSVVAADLAD
RCLVQVSYGIGIAEPLSIFVDTFGTGKKTDAEITDIVKKNFDLRPGRIIR
DLDLLRPIYSKTAAYGHFGRDDDDFTWEKPKKLEF*

mRNA from alignment at tig00025222_pilon:714782..715939-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3707.t1 ID=Gchil3707.t1|Name=Gchil3707.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1158bp|location=Sequence derived from alignment at tig00025222_pilon:714782..715939- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCAATTCGTTTTTGTTCACGAGTGAGTCTGTCAATGAGGGTCACCC
CGATAAGCTCTGTGACCAGGTCTCCGACGCCGTTTTGGACGTCTGCCTCG
AGCAGGACCCCTGGTCCAAGGTTGCCTGTGAGACCGCCTCGAAGACCGGC
ATGGTAATGTGCTTTGGTGAGATTACCACCAAGGCAAAGATCAATTACGA
GCAGGTCATCCGTGACGCCATCCAGAAGATTGGCTTCGACGCCGAGGAAA
AGGGTCTGGACTACAAGACCTGCCGCGTTCTCGTCGAACTCCACGCCCAG
AGCCCCGACATCGCACAGGGCGTCCACGAGGGCCGTACCGCCGAGGACGT
CGGCGCCGGTGACCAGGGCATCATGTTCGGCTATGCCACCAACGAGTCAC
CGGATTACATGCCGCTCACGTCCTCCTTTGCCAACAAGCTAGGCTTCCGC
CTCACTGAGGTGCGCAAGTCCGGCGTCTGCCCTTGGGTCCGCCCAGACGG
CAAGACACAGGTCACCATGGAGTACAGCAAGTCGCCCGAAGGTAAGCTCA
CCCCGGTGCGCGTCCACACCATTCTCATTTCCACTCAGCATGATGAAGGT
GTGTCCAACGAAAAGATCCGCGCTGATCTTATGGAAAAGGTTATCAAGGA
GGTCATTCCGGACAAGTACTTGGATGACGACACCATTTACCATCTCAACC
CTTCTGGTCGTTTCGTCATTGGTGGTCCCGAAGGTGATGCCGGCCTCACT
GGCCGTAAAATCATCATTGACACCTATGGTGGTTGGGGAGCCCATGGTGG
TGGTGCCTTCTCCGGCAAGGACCCCACCAAGGTCGACCGTTCAGCTGCCT
ATGCTGGGCGCTGGGTGGCCAAGTCTGTGGTCGCTGCCGATTTGGCTGAC
CGCTGCCTGGTTCAGGTTTCGTACGGTATTGGTATCGCCGAACCCCTGTC
TATCTTTGTTGACACCTTTGGCACTGGCAAGAAGACAGACGCTGAAATTA
CCGATATCGTCAAGAAGAACTTCGACCTTCGCCCGGGCCGCATCATCCGT
GACCTTGACCTGCTCCGTCCCATCTATTCTAAGACGGCCGCCTACGGTCA
CTTTGGTCGTGACGATGATGACTTCACCTGGGAGAAGCCGAAGAAGCTTG
AATTCTAA

Coding sequence (CDS) from alignment at tig00025222_pilon:714782..715939-

>Gchil3707.t1 ID=Gchil3707.t1|Name=Gchil3707.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1158bp|location=Sequence derived from alignment at tig00025222_pilon:714782..715939- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCAATTCGTTTTTGTTCACGAGTGAGTCTGTCAATGAGGGTCACCC
CGATAAGCTCTGTGACCAGGTCTCCGACGCCGTTTTGGACGTCTGCCTCG
AGCAGGACCCCTGGTCCAAGGTTGCCTGTGAGACCGCCTCGAAGACCGGC
ATGGTAATGTGCTTTGGTGAGATTACCACCAAGGCAAAGATCAATTACGA
GCAGGTCATCCGTGACGCCATCCAGAAGATTGGCTTCGACGCCGAGGAAA
AGGGTCTGGACTACAAGACCTGCCGCGTTCTCGTCGAACTCCACGCCCAG
AGCCCCGACATCGCACAGGGCGTCCACGAGGGCCGTACCGCCGAGGACGT
CGGCGCCGGTGACCAGGGCATCATGTTCGGCTATGCCACCAACGAGTCAC
CGGATTACATGCCGCTCACGTCCTCCTTTGCCAACAAGCTAGGCTTCCGC
CTCACTGAGGTGCGCAAGTCCGGCGTCTGCCCTTGGGTCCGCCCAGACGG
CAAGACACAGGTCACCATGGAGTACAGCAAGTCGCCCGAAGGTAAGCTCA
CCCCGGTGCGCGTCCACACCATTCTCATTTCCACTCAGCATGATGAAGGT
GTGTCCAACGAAAAGATCCGCGCTGATCTTATGGAAAAGGTTATCAAGGA
GGTCATTCCGGACAAGTACTTGGATGACGACACCATTTACCATCTCAACC
CTTCTGGTCGTTTCGTCATTGGTGGTCCCGAAGGTGATGCCGGCCTCACT
GGCCGTAAAATCATCATTGACACCTATGGTGGTTGGGGAGCCCATGGTGG
TGGTGCCTTCTCCGGCAAGGACCCCACCAAGGTCGACCGTTCAGCTGCCT
ATGCTGGGCGCTGGGTGGCCAAGTCTGTGGTCGCTGCCGATTTGGCTGAC
CGCTGCCTGGTTCAGGTTTCGTACGGTATTGGTATCGCCGAACCCCTGTC
TATCTTTGTTGACACCTTTGGCACTGGCAAGAAGACAGACGCTGAAATTA
CCGATATCGTCAAGAAGAACTTCGACCTTCGCCCGGGCCGCATCATCCGT
GACCTTGACCTGCTCCGTCCCATCTATTCTAAGACGGCCGCCTACGGTCA
CTTTGGTCGTGACGATGATGACTTCACCTGGGAGAAGCCGAAGAAGCTTG
AATTCTAA