Gchil3685.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3685.t1
Unique NameGchil3685.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length181
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00025222_piloncontigtig00025222_pilon:594030..594572 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX49453
PFAMsFKBP_C
Max annot lvl2759|Eukaryota
GOsGO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0005488,GO:0005527,GO:0005528,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006457,GO:0006464,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009987,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0061077,GO:0071704,GO:0097159,GO:0140096,GO:1901363,GO:1901564
Evalue2.68e-22
EggNOG OGsCOG0545@1|root,KOG0552@2759|Eukaryota
Descriptionhistone peptidyl-prolyl isomerization
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3685Gchil3685Gracilaria chilensis NLEC103_M9 malegenetig00025222_pilon 594030..594572 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3685.t1.stop1Gchil3685.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00025222_pilon 594030..594032 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3685.t1.CDS1Gchil3685.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00025222_pilon 594030..594572 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3685.t1.exon1Gchil3685.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00025222_pilon 594030..594572 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3685.t1.start1Gchil3685.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00025222_pilon 594570..594572 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3685.t1Gchil3685.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00025222_pilon 594030..594572 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3685.t1 ID=Gchil3685.t1|Name=Gchil3685.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=181bp
MATEKAPRPTSAITRRALLQVCGLMMLQTPASSAAVRVADPSAGSEIERT
QTGLQYYDFILPEEDKPSVGSTSVVTVHYTLGTTGARNGWRIDSTYDREP
FTFRMGSKDVISGMEEGVLGMRVGGKRRLLIPSTIGYRNANDRPLPKGFA
EFQRFKNIYLNPDRVYKPDIVIDVTVLRVR*
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spliced messenger RNA

>Gchil3685.t1 ID=Gchil3685.t1|Name=Gchil3685.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=543bp|location=Sequence derived from alignment at tig00025222_pilon:594030..594572- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGACAGAGAAAGCGCCAAGGCCGACTTCTGCAATCACACGAAGAGC
CTTGTTGCAAGTCTGTGGGTTAATGATGCTCCAAACACCGGCATCGAGCG
CTGCTGTACGTGTAGCTGACCCTTCCGCGGGTAGCGAAATTGAAAGAACT
CAAACTGGTTTACAATATTATGACTTCATCCTACCAGAGGAAGATAAGCC
TTCAGTCGGGTCCACATCAGTTGTCACAGTACATTACACTCTCGGAACTA
CTGGCGCACGAAATGGATGGCGCATTGATAGTACATACGATCGTGAACCG
TTCACTTTTCGCATGGGAAGCAAGGATGTTATTTCTGGAATGGAGGAAGG
AGTATTAGGTATGCGCGTTGGCGGGAAGAGACGCTTATTGATACCGAGCA
CTATCGGCTATCGAAACGCTAACGACCGTCCTCTTCCAAAAGGCTTTGCG
GAATTTCAACGCTTCAAGAACATCTATCTTAATCCTGATCGCGTGTACAA
ACCTGACATAGTGATTGATGTGACAGTGTTAAGAGTCCGTTGA
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protein sequence of Gchil3685.t1

>Gchil3685.t1 ID=Gchil3685.t1|Name=Gchil3685.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=181bp
MATEKAPRPTSAITRRALLQVCGLMMLQTPASSAAVRVADPSAGSEIERT
QTGLQYYDFILPEEDKPSVGSTSVVTVHYTLGTTGARNGWRIDSTYDREP
FTFRMGSKDVISGMEEGVLGMRVGGKRRLLIPSTIGYRNANDRPLPKGFA
EFQRFKNIYLNPDRVYKPDIVIDVTVLRVR*
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mRNA from alignment at tig00025222_pilon:594030..594572-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3685.t1 ID=Gchil3685.t1|Name=Gchil3685.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=543bp|location=Sequence derived from alignment at tig00025222_pilon:594030..594572- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGACAGAGAAAGCGCCAAGGCCGACTTCTGCAATCACACGAAGAGC
CTTGTTGCAAGTCTGTGGGTTAATGATGCTCCAAACACCGGCATCGAGCG
CTGCTGTACGTGTAGCTGACCCTTCCGCGGGTAGCGAAATTGAAAGAACT
CAAACTGGTTTACAATATTATGACTTCATCCTACCAGAGGAAGATAAGCC
TTCAGTCGGGTCCACATCAGTTGTCACAGTACATTACACTCTCGGAACTA
CTGGCGCACGAAATGGATGGCGCATTGATAGTACATACGATCGTGAACCG
TTCACTTTTCGCATGGGAAGCAAGGATGTTATTTCTGGAATGGAGGAAGG
AGTATTAGGTATGCGCGTTGGCGGGAAGAGACGCTTATTGATACCGAGCA
CTATCGGCTATCGAAACGCTAACGACCGTCCTCTTCCAAAAGGCTTTGCG
GAATTTCAACGCTTCAAGAACATCTATCTTAATCCTGATCGCGTGTACAA
ACCTGACATAGTGATTGATGTGACAGTGTTAAGAGTCCGTTGA
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Coding sequence (CDS) from alignment at tig00025222_pilon:594030..594572-

>Gchil3685.t1 ID=Gchil3685.t1|Name=Gchil3685.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=543bp|location=Sequence derived from alignment at tig00025222_pilon:594030..594572- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGACAGAGAAAGCGCCAAGGCCGACTTCTGCAATCACACGAAGAGC
CTTGTTGCAAGTCTGTGGGTTAATGATGCTCCAAACACCGGCATCGAGCG
CTGCTGTACGTGTAGCTGACCCTTCCGCGGGTAGCGAAATTGAAAGAACT
CAAACTGGTTTACAATATTATGACTTCATCCTACCAGAGGAAGATAAGCC
TTCAGTCGGGTCCACATCAGTTGTCACAGTACATTACACTCTCGGAACTA
CTGGCGCACGAAATGGATGGCGCATTGATAGTACATACGATCGTGAACCG
TTCACTTTTCGCATGGGAAGCAAGGATGTTATTTCTGGAATGGAGGAAGG
AGTATTAGGTATGCGCGTTGGCGGGAAGAGACGCTTATTGATACCGAGCA
CTATCGGCTATCGAAACGCTAACGACCGTCCTCTTCCAAAAGGCTTTGCG
GAATTTCAACGCTTCAAGAACATCTATCTTAATCCTGATCGCGTGTACAA
ACCTGACATAGTGATTGATGTGACAGTGTTAAGAGTCCGTTGA
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