Gchil3713.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3713.t1
Unique NameGchil3713.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length298
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00025222_piloncontigtig00025222_pilon:871919..872890 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3713Gchil3713Gracilaria chilensis NLEC103_M9 malegenetig00025222_pilon 871919..872890 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3713.t1Gchil3713.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00025222_pilon 871919..872890 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3713.t1.stop1Gchil3713.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00025222_pilon 871919..871921 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3713.t1.CDS1Gchil3713.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00025222_pilon 871919..872625 -
Gchil3713.t1.CDS2Gchil3713.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00025222_pilon 872704..872890 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3713.t1.exon1Gchil3713.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00025222_pilon 871919..872625 -
Gchil3713.t1.exon2Gchil3713.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00025222_pilon 872704..872890 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3713.t1.intron1Gchil3713.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00025222_pilon 872626..872703 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3713.t1.start1Gchil3713.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00025222_pilon 872888..872890 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3713.t1 ID=Gchil3713.t1|Name=Gchil3713.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=298bp
MSLSIYRTQPSREVKPIQQYQSNTIYPSLSKCHRGNYTLQFSFSQLASLS
LEISVKLNQLVPTSRIDVNHCKGNSQNPTGNQFAGNYTLIGHEALLSDDE
CLIKQEGGEMVYESMQAIVITTNGWTFQPTTIDLDDVDAEPGVESGDGWK
ESMAIGRDNPESERCRMTASFTEAIDTLVIMYAVLRKSKTQTRAAAFISE
RIMKCGCRCSQKDIGIRKLYAPIPGVKGECVEKESTSPRTMCDVLGTTWC
NKDDIVGYKPTGDALPNGNCPCVENKGFRVTTDSPFKPRNVFILSTV*
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spliced messenger RNA

>Gchil3713.t1 ID=Gchil3713.t1|Name=Gchil3713.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=894bp|location=Sequence derived from alignment at tig00025222_pilon:871919..872890- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCCTGTCCATTTACCGAACGCAGCCTTCAAGAGAAGTCAAACCTAT
CCAACAATACCAGTCGAACACAATTTATCCATCGCTTTCAAAATGTCATC
GTGGAAACTATACTCTCCAGTTCTCATTCTCGCAGTTGGCATCATTGTCT
TTGGAAATTTCGGTGAAGCTGAATCAACTTGTTCCAACTTCCAGAATAGA
TGTCAACCACTGCAAGGGAAATTCTCAGAACCCGACTGGTAATCAGTTTG
CTGGTAATTACACTCTTATAGGCCACGAAGCATTGCTATCTGACGACGAA
TGTCTGATTAAGCAGGAAGGAGGCGAAATGGTGTATGAATCGATGCAAGC
TATTGTAATCACAACAAACGGGTGGACATTCCAACCGACTACCATCGATT
TGGACGATGTTGACGCCGAACCGGGGGTTGAATCTGGTGACGGATGGAAG
GAAAGCATGGCAATCGGTCGGGATAATCCGGAATCGGAACGTTGTCGCAT
GACTGCATCTTTCACAGAAGCCATCGACACTCTCGTCATTATGTACGCGG
TTTTACGGAAGAGCAAGACACAAACTCGTGCTGCGGCGTTTATCTCTGAG
AGAATCATGAAATGCGGTTGCCGTTGTTCTCAAAAAGATATTGGAATCAG
AAAACTATACGCACCCATTCCAGGGGTTAAAGGCGAGTGTGTGGAAAAGG
AAAGTACTTCACCTCGGACTATGTGTGATGTGTTGGGTACAACTTGGTGT
AACAAGGATGACATTGTGGGATACAAACCAACTGGAGATGCTTTGCCGAA
CGGAAATTGTCCATGTGTGGAAAACAAGGGCTTTCGAGTAACTACTGACT
CGCCCTTCAAACCGAGAAACGTCTTTATTCTAAGTACTGTTTAG
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protein sequence of Gchil3713.t1

>Gchil3713.t1 ID=Gchil3713.t1|Name=Gchil3713.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=298bp
MSLSIYRTQPSREVKPIQQYQSNTIYPSLSKCHRGNYTLQFSFSQLASLS
LEISVKLNQLVPTSRIDVNHCKGNSQNPTGNQFAGNYTLIGHEALLSDDE
CLIKQEGGEMVYESMQAIVITTNGWTFQPTTIDLDDVDAEPGVESGDGWK
ESMAIGRDNPESERCRMTASFTEAIDTLVIMYAVLRKSKTQTRAAAFISE
RIMKCGCRCSQKDIGIRKLYAPIPGVKGECVEKESTSPRTMCDVLGTTWC
NKDDIVGYKPTGDALPNGNCPCVENKGFRVTTDSPFKPRNVFILSTV*
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mRNA from alignment at tig00025222_pilon:871919..872890-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3713.t1 ID=Gchil3713.t1|Name=Gchil3713.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=972bp|location=Sequence derived from alignment at tig00025222_pilon:871919..872890- (Gracilaria chilensis NLEC103_M9 male)
ATGTCCCTGTCCATTTACCGAACGCAGCCTTCAAGAGAAGTCAAACCTAT
CCAACAATACCAGTCGAACACAATTTATCCATCGCTTTCAAAATGTCATC
GTGGAAACTATACTCTCCAGTTCTCATTCTCGCAGTTGGCATCATTGTCT
TTGGAAATTTCGGTGAAGCTGAATCAACTTGTTCCAAGTACATTCCCGTT
TATCAGATTTTGGGAGCCCCCAATAAGGTTCAAACGTTTGATGATATTGA
TGGCTTAGATCAAAGCTTCCAGAATAGATGTCAACCACTGCAAGGGAAAT
TCTCAGAACCCGACTGGTAATCAGTTTGCTGGTAATTACACTCTTATAGG
CCACGAAGCATTGCTATCTGACGACGAATGTCTGATTAAGCAGGAAGGAG
GCGAAATGGTGTATGAATCGATGCAAGCTATTGTAATCACAACAAACGGG
TGGACATTCCAACCGACTACCATCGATTTGGACGATGTTGACGCCGAACC
GGGGGTTGAATCTGGTGACGGATGGAAGGAAAGCATGGCAATCGGTCGGG
ATAATCCGGAATCGGAACGTTGTCGCATGACTGCATCTTTCACAGAAGCC
ATCGACACTCTCGTCATTATGTACGCGGTTTTACGGAAGAGCAAGACACA
AACTCGTGCTGCGGCGTTTATCTCTGAGAGAATCATGAAATGCGGTTGCC
GTTGTTCTCAAAAAGATATTGGAATCAGAAAACTATACGCACCCATTCCA
GGGGTTAAAGGCGAGTGTGTGGAAAAGGAAAGTACTTCACCTCGGACTAT
GTGTGATGTGTTGGGTACAACTTGGTGTAACAAGGATGACATTGTGGGAT
ACAAACCAACTGGAGATGCTTTGCCGAACGGAAATTGTCCATGTGTGGAA
AACAAGGGCTTTCGAGTAACTACTGACTCGCCCTTCAAACCGAGAAACGT
CTTTATTCTAAGTACTGTTTAG
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Coding sequence (CDS) from alignment at tig00025222_pilon:871919..872890-

>Gchil3713.t1 ID=Gchil3713.t1|Name=Gchil3713.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=894bp|location=Sequence derived from alignment at tig00025222_pilon:871919..872890- (Gracilaria chilensis NLEC103_M9 male)
ATGTCCCTGTCCATTTACCGAACGCAGCCTTCAAGAGAAGTCAAACCTAT
CCAACAATACCAGTCGAACACAATTTATCCATCGCTTTCAAAATGTCATC
GTGGAAACTATACTCTCCAGTTCTCATTCTCGCAGTTGGCATCATTGTCT
TTGGAAATTTCGGTGAAGCTGAATCAACTTGTTCCAACTTCCAGAATAGA
TGTCAACCACTGCAAGGGAAATTCTCAGAACCCGACTGGTAATCAGTTTG
CTGGTAATTACACTCTTATAGGCCACGAAGCATTGCTATCTGACGACGAA
TGTCTGATTAAGCAGGAAGGAGGCGAAATGGTGTATGAATCGATGCAAGC
TATTGTAATCACAACAAACGGGTGGACATTCCAACCGACTACCATCGATT
TGGACGATGTTGACGCCGAACCGGGGGTTGAATCTGGTGACGGATGGAAG
GAAAGCATGGCAATCGGTCGGGATAATCCGGAATCGGAACGTTGTCGCAT
GACTGCATCTTTCACAGAAGCCATCGACACTCTCGTCATTATGTACGCGG
TTTTACGGAAGAGCAAGACACAAACTCGTGCTGCGGCGTTTATCTCTGAG
AGAATCATGAAATGCGGTTGCCGTTGTTCTCAAAAAGATATTGGAATCAG
AAAACTATACGCACCCATTCCAGGGGTTAAAGGCGAGTGTGTGGAAAAGG
AAAGTACTTCACCTCGGACTATGTGTGATGTGTTGGGTACAACTTGGTGT
AACAAGGATGACATTGTGGGATACAAACCAACTGGAGATGCTTTGCCGAA
CGGAAATTGTCCATGTGTGGAAAACAAGGGCTTTCGAGTAACTACTGACT
CGCCCTTCAAACCGAGAAACGTCTTTATTCTAAGTACTGTTTAG
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