Gchil904.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil904.t1
Unique Name	Gchil904.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	342

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000017_pilon	contig	tig00000017_pilon:1163126..1164151 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2903.EOD40142
Preferred name	CYCB
PFAMs	Cyclin_C,Cyclin_N
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K21770,ko:K21777
KEGG TC	1.I.1.1.3
KEGG Pathway	ko04068,ko04110,ko04114,ko04115,ko04218,ko04914,ko05166,map04068,map04110,map04114,map04115,map04218,map04914,map05166
GOs	GO:0001558,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009314,GO:0009628,GO:0010212,GO:0010332,GO:0040008,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0065007
Evalue	9.61e-46
EggNOG OGs	COG5024@1\|root,KOG0653@2759\|Eukaryota
Description	cell division
COG category	D
BRITE	ko00000,ko00001,ko03032,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil904	Gchil904	Gracilaria chilensis NLEC103_M9 male	gene	tig00000017_pilon 1163126..1164151 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil904.t1.start1	Gchil904.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000017_pilon 1163126..1163128 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil904.t1.CDS1	Gchil904.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000017_pilon 1163126..1164151 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil904.t1.exon1	Gchil904.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000017_pilon 1163126..1164151 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil904.t1.stop1	Gchil904.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000017_pilon 1164149..1164151 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil904.t1	Gchil904.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000017_pilon 1163126..1164151 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000017_pilon:1163126..1164151+
coding sequence from alignment at tig00000017_pilon:1163126..1164151+

mRNA sequence

>Gchil904.t1 ID=Gchil904.t1|Name=Gchil904.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=342bp
MPISIIAKRALGDITNRHATQPNTFLSKRSAASQKLSSQHSAPPKRSRQL
PSKELISLENKGKPFTTGAKYIDIDASDKKNHIEGSDFAADIHNNHLNAE
KRHLPRGDYLDCHPTVSKKMRAILVDWLTDVCASIKLSDSTLHLCVHILD
RFLQEHQPTRNNLQLVGSVCLYIAAKYEEIYAPCAGDFVALAKGAFSRQD
VIIMEAIVLNVLRFQVTTPYCLTFLARIEKTLLEKGVSEEVVQHISTMAH
MFVELSMVDGLCLMFRPSLLAASAVFLAIQKLSVGTSWCESLAFHSGWSQ
GELVGCVKDLRDLVDMGDETSRRLTAIPRKFERKASDKRTF*

spliced messenger RNA

>Gchil904.t1 ID=Gchil904.t1|Name=Gchil904.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1026bp|location=Sequence derived from alignment at tig00000017_pilon:1163126..1164151+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGATTTCTATTATTGCTAAGCGAGCTTTGGGCGATATCACTAACCG
CCACGCGACTCAGCCCAACACCTTCTTGTCTAAGCGATCTGCAGCTTCGC
AAAAGCTTTCTTCCCAACATTCCGCACCTCCGAAACGCAGTCGCCAGCTT
CCGTCTAAGGAGTTGATCTCCCTAGAGAATAAGGGAAAACCATTTACCAC
AGGAGCTAAATACATTGATATCGATGCGTCCGACAAGAAGAATCATATTG
AGGGGAGCGACTTTGCTGCCGACATCCACAACAACCACCTAAACGCAGAG
AAGCGACACTTGCCCAGGGGCGATTACTTGGATTGCCACCCGACAGTGTC
GAAGAAAATGCGAGCCATTCTAGTGGACTGGCTCACAGACGTTTGCGCCA
GTATCAAGCTCTCTGACAGCACCCTGCACCTGTGTGTGCACATTCTCGAC
CGCTTCCTCCAGGAACACCAACCAACGCGCAACAATCTTCAGCTTGTGGG
CAGCGTGTGTCTATACATTGCGGCAAAGTACGAGGAAATCTACGCGCCCT
GTGCAGGCGACTTCGTGGCTCTTGCGAAAGGCGCATTCAGCAGGCAAGAT
GTGATCATCATGGAAGCCATCGTGTTGAATGTTTTGCGCTTCCAGGTGAC
CACTCCTTACTGTTTGACGTTCCTCGCTCGCATCGAGAAGACTCTTTTGG
AAAAGGGTGTGTCCGAGGAGGTTGTGCAACACATCTCCACAATGGCGCAC
ATGTTTGTGGAGCTTTCAATGGTCGATGGGCTGTGCTTGATGTTCCGACC
GAGTCTTTTGGCGGCCAGTGCGGTTTTTTTGGCCATACAGAAGCTGAGTG
TAGGGACTAGCTGGTGTGAGAGCTTGGCTTTTCACTCTGGGTGGAGCCAG
GGCGAGCTTGTGGGATGCGTGAAGGACTTGCGAGACCTGGTTGATATGGG
AGACGAGACGAGCAGACGTCTAACAGCGATCCCAAGAAAGTTCGAGCGTA
AAGCGTCGGACAAGAGGACTTTTTGA

protein sequence of Gchil904.t1

>Gchil904.t1 ID=Gchil904.t1|Name=Gchil904.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=342bp
MPISIIAKRALGDITNRHATQPNTFLSKRSAASQKLSSQHSAPPKRSRQL
PSKELISLENKGKPFTTGAKYIDIDASDKKNHIEGSDFAADIHNNHLNAE
KRHLPRGDYLDCHPTVSKKMRAILVDWLTDVCASIKLSDSTLHLCVHILD
RFLQEHQPTRNNLQLVGSVCLYIAAKYEEIYAPCAGDFVALAKGAFSRQD
VIIMEAIVLNVLRFQVTTPYCLTFLARIEKTLLEKGVSEEVVQHISTMAH
MFVELSMVDGLCLMFRPSLLAASAVFLAIQKLSVGTSWCESLAFHSGWSQ
GELVGCVKDLRDLVDMGDETSRRLTAIPRKFERKASDKRTF*

mRNA from alignment at tig00000017_pilon:1163126..1164151+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil904.t1 ID=Gchil904.t1|Name=Gchil904.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1026bp|location=Sequence derived from alignment at tig00000017_pilon:1163126..1164151+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCGATTTCTATTATTGCTAAGCGAGCTTTGGGCGATATCACTAACCG
CCACGCGACTCAGCCCAACACCTTCTTGTCTAAGCGATCTGCAGCTTCGC
AAAAGCTTTCTTCCCAACATTCCGCACCTCCGAAACGCAGTCGCCAGCTT
CCGTCTAAGGAGTTGATCTCCCTAGAGAATAAGGGAAAACCATTTACCAC
AGGAGCTAAATACATTGATATCGATGCGTCCGACAAGAAGAATCATATTG
AGGGGAGCGACTTTGCTGCCGACATCCACAACAACCACCTAAACGCAGAG
AAGCGACACTTGCCCAGGGGCGATTACTTGGATTGCCACCCGACAGTGTC
GAAGAAAATGCGAGCCATTCTAGTGGACTGGCTCACAGACGTTTGCGCCA
GTATCAAGCTCTCTGACAGCACCCTGCACCTGTGTGTGCACATTCTCGAC
CGCTTCCTCCAGGAACACCAACCAACGCGCAACAATCTTCAGCTTGTGGG
CAGCGTGTGTCTATACATTGCGGCAAAGTACGAGGAAATCTACGCGCCCT
GTGCAGGCGACTTCGTGGCTCTTGCGAAAGGCGCATTCAGCAGGCAAGAT
GTGATCATCATGGAAGCCATCGTGTTGAATGTTTTGCGCTTCCAGGTGAC
CACTCCTTACTGTTTGACGTTCCTCGCTCGCATCGAGAAGACTCTTTTGG
AAAAGGGTGTGTCCGAGGAGGTTGTGCAACACATCTCCACAATGGCGCAC
ATGTTTGTGGAGCTTTCAATGGTCGATGGGCTGTGCTTGATGTTCCGACC
GAGTCTTTTGGCGGCCAGTGCGGTTTTTTTGGCCATACAGAAGCTGAGTG
TAGGGACTAGCTGGTGTGAGAGCTTGGCTTTTCACTCTGGGTGGAGCCAG
GGCGAGCTTGTGGGATGCGTGAAGGACTTGCGAGACCTGGTTGATATGGG
AGACGAGACGAGCAGACGTCTAACAGCGATCCCAAGAAAGTTCGAGCGTA
AAGCGTCGGACAAGAGGACTTTTTGA

Coding sequence (CDS) from alignment at tig00000017_pilon:1163126..1164151+

>Gchil904.t1 ID=Gchil904.t1|Name=Gchil904.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1026bp|location=Sequence derived from alignment at tig00000017_pilon:1163126..1164151+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCGATTTCTATTATTGCTAAGCGAGCTTTGGGCGATATCACTAACCG
CCACGCGACTCAGCCCAACACCTTCTTGTCTAAGCGATCTGCAGCTTCGC
AAAAGCTTTCTTCCCAACATTCCGCACCTCCGAAACGCAGTCGCCAGCTT
CCGTCTAAGGAGTTGATCTCCCTAGAGAATAAGGGAAAACCATTTACCAC
AGGAGCTAAATACATTGATATCGATGCGTCCGACAAGAAGAATCATATTG
AGGGGAGCGACTTTGCTGCCGACATCCACAACAACCACCTAAACGCAGAG
AAGCGACACTTGCCCAGGGGCGATTACTTGGATTGCCACCCGACAGTGTC
GAAGAAAATGCGAGCCATTCTAGTGGACTGGCTCACAGACGTTTGCGCCA
GTATCAAGCTCTCTGACAGCACCCTGCACCTGTGTGTGCACATTCTCGAC
CGCTTCCTCCAGGAACACCAACCAACGCGCAACAATCTTCAGCTTGTGGG
CAGCGTGTGTCTATACATTGCGGCAAAGTACGAGGAAATCTACGCGCCCT
GTGCAGGCGACTTCGTGGCTCTTGCGAAAGGCGCATTCAGCAGGCAAGAT
GTGATCATCATGGAAGCCATCGTGTTGAATGTTTTGCGCTTCCAGGTGAC
CACTCCTTACTGTTTGACGTTCCTCGCTCGCATCGAGAAGACTCTTTTGG
AAAAGGGTGTGTCCGAGGAGGTTGTGCAACACATCTCCACAATGGCGCAC
ATGTTTGTGGAGCTTTCAATGGTCGATGGGCTGTGCTTGATGTTCCGACC
GAGTCTTTTGGCGGCCAGTGCGGTTTTTTTGGCCATACAGAAGCTGAGTG
TAGGGACTAGCTGGTGTGAGAGCTTGGCTTTTCACTCTGGGTGGAGCCAG
GGCGAGCTTGTGGGATGCGTGAAGGACTTGCGAGACCTGGTTGATATGGG
AGACGAGACGAGCAGACGTCTAACAGCGATCCCAAGAAAGTTCGAGCGTA
AAGCGTCGGACAAGAGGACTTTTTGA