Gchil3694.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3694.t1
Unique Name	Gchil3694.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	368

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00025222_pilon	contig	tig00025222_pilon:687457..688560 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMP193CT
Preferred name	cMDH
PFAMs	Ldh_1_C,Ldh_1_N
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00031
KEGG ko	ko:K00024,ko:K00025,ko:K00026
KEGG Reaction	R00342,R07136
KEGG Pathway	ko00020,ko00270,ko00620,ko00630,ko00680,ko00710,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko04964,map00020,map00270,map00620,map00630,map00680,map00710,map00720,map01100,map01110,map01120,map01130,map01200,map04964
KEGG Module	M00009,M00011,M00012,M00168,M00171,M00173,M00346,M00374,M00620,M00740
GOs	GO:0003674,GO:0003824,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005886,GO:0005911,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006107,GO:0006108,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0008150,GO:0008152,GO:0009060,GO:0009117,GO:0009506,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009628,GO:0009651,GO:0009719,GO:0009725,GO:0009735,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010043,GO:0015980,GO:0016020,GO:0016491,GO:0016614,GO:0016615,GO:0016616,GO:0016999,GO:0017144,GO:0019362,GO:0019637,GO:0019674,GO:0019752,GO:0030054,GO:0030060,GO:0031090,GO:0034641,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0046483,GO:0046496,GO:0046686,GO:0048046,GO:0050896,GO:0051186,GO:0055044,GO:0055086,GO:0055114,GO:0071704,GO:0071944,GO:0072350,GO:0072524,GO:0098588,GO:0098805,GO:1901360,GO:1901564
Evalue	1.24e-131
EggNOG OGs	COG0039@1\|root,KOG1496@2759\|Eukaryota
EC	1.1.1.37
Description	malate metabolic process
COG category	C
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3694	Gchil3694	Gracilaria chilensis NLEC103_M9 male	gene	tig00025222_pilon 687457..688560 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3694.t1.start1	Gchil3694.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00025222_pilon 687457..687459 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3694.t1.CDS1	Gchil3694.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00025222_pilon 687457..688560 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3694.t1.exon1	Gchil3694.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00025222_pilon 687457..688560 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3694.t1.stop1	Gchil3694.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00025222_pilon 688558..688560 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3694.t1	Gchil3694.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00025222_pilon 687457..688560 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00025222_pilon:687457..688560+
coding sequence from alignment at tig00025222_pilon:687457..688560+

mRNA sequence

>Gchil3694.t1 ID=Gchil3694.t1|Name=Gchil3694.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=368bp
MLRTSIHSVRRALSTKAAELPVKKVAITGAAGSIGYALLMRIASGQMLGP
SQPVELQLIETEPGMKPLQGVAMEIMDGAFPLVRKVTKTSDPKEGFGDAE
IAVLVGGKPRGPGMERADLMSANAAIFAEQGKAINESASRNVSVLLVANP
ANTNALVASAHAPDIDPERFMAMTRLDHNRAIGQVAGKTGAMAGDVEKVV
IWGNHSATQYPDLSNALVEGKPALEVINDMPWVQKEFIPRVQKRGAEIIG
ASGRSSASSAASAAIDHVRDLFLGSGSSWKSMAIPSDGSYGIDSGIWFSV
PCLCPGESIYQRILDIPAPNEFSAAMIDATRKELLEERDTVRHLLPGGTT
TQTTTKTRKRRAKKATA*

spliced messenger RNA

>Gchil3694.t1 ID=Gchil3694.t1|Name=Gchil3694.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1104bp|location=Sequence derived from alignment at tig00025222_pilon:687457..688560+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGCGCACATCTATTCATTCCGTGCGACGCGCACTCAGCACAAAGGC
TGCCGAACTTCCGGTAAAGAAGGTTGCTATAACGGGCGCCGCGGGGTCGA
TCGGGTACGCATTGCTAATGCGGATCGCCTCCGGTCAAATGCTCGGTCCA
TCCCAGCCGGTTGAGCTGCAACTGATCGAAACCGAACCCGGAATGAAGCC
TCTACAGGGTGTTGCAATGGAAATTATGGACGGAGCATTCCCTCTCGTAC
GAAAAGTTACGAAAACGTCAGATCCGAAGGAAGGATTTGGTGATGCCGAA
ATCGCGGTTCTTGTCGGGGGGAAGCCTCGCGGTCCTGGAATGGAAAGGGC
TGATCTCATGAGCGCGAATGCTGCCATTTTTGCGGAACAAGGGAAAGCGA
TCAACGAATCTGCTAGTAGAAATGTGTCTGTGCTGCTTGTTGCAAACCCC
GCGAACACTAATGCTCTCGTTGCATCTGCACACGCACCCGATATCGATCC
GGAGAGATTTATGGCAATGACTAGGTTGGATCATAATCGTGCGATTGGGC
AAGTTGCTGGAAAGACAGGAGCTATGGCTGGTGATGTTGAGAAGGTTGTG
ATTTGGGGTAATCACTCTGCTACCCAATATCCAGACTTGTCCAATGCTTT
AGTAGAAGGAAAGCCCGCGTTAGAGGTAATCAATGACATGCCCTGGGTGC
AGAAAGAGTTCATTCCTCGTGTGCAAAAGCGTGGCGCGGAGATTATCGGG
GCGAGCGGGAGGAGCTCGGCAAGTTCGGCAGCATCAGCCGCTATCGACCA
CGTGCGCGATCTATTCCTCGGATCTGGAAGCTCTTGGAAGAGCATGGCTA
TTCCATCTGATGGTTCCTACGGCATCGATTCAGGCATCTGGTTTTCAGTA
CCGTGTCTATGCCCTGGAGAAAGCATATATCAACGCATCTTGGACATTCC
CGCACCGAACGAGTTTTCAGCTGCCATGATTGATGCCACGAGAAAGGAAT
TACTGGAGGAACGAGATACTGTTCGGCACCTGTTGCCGGGGGGCACTACA
ACACAGACGACGACAAAGACGAGAAAGAGGCGGGCTAAGAAAGCAACGGC
ATAA

protein sequence of Gchil3694.t1

>Gchil3694.t1 ID=Gchil3694.t1|Name=Gchil3694.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=368bp
MLRTSIHSVRRALSTKAAELPVKKVAITGAAGSIGYALLMRIASGQMLGP
SQPVELQLIETEPGMKPLQGVAMEIMDGAFPLVRKVTKTSDPKEGFGDAE
IAVLVGGKPRGPGMERADLMSANAAIFAEQGKAINESASRNVSVLLVANP
ANTNALVASAHAPDIDPERFMAMTRLDHNRAIGQVAGKTGAMAGDVEKVV
IWGNHSATQYPDLSNALVEGKPALEVINDMPWVQKEFIPRVQKRGAEIIG
ASGRSSASSAASAAIDHVRDLFLGSGSSWKSMAIPSDGSYGIDSGIWFSV
PCLCPGESIYQRILDIPAPNEFSAAMIDATRKELLEERDTVRHLLPGGTT
TQTTTKTRKRRAKKATA*

mRNA from alignment at tig00025222_pilon:687457..688560+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3694.t1 ID=Gchil3694.t1|Name=Gchil3694.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1104bp|location=Sequence derived from alignment at tig00025222_pilon:687457..688560+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTGCGCACATCTATTCATTCCGTGCGACGCGCACTCAGCACAAAGGC
TGCCGAACTTCCGGTAAAGAAGGTTGCTATAACGGGCGCCGCGGGGTCGA
TCGGGTACGCATTGCTAATGCGGATCGCCTCCGGTCAAATGCTCGGTCCA
TCCCAGCCGGTTGAGCTGCAACTGATCGAAACCGAACCCGGAATGAAGCC
TCTACAGGGTGTTGCAATGGAAATTATGGACGGAGCATTCCCTCTCGTAC
GAAAAGTTACGAAAACGTCAGATCCGAAGGAAGGATTTGGTGATGCCGAA
ATCGCGGTTCTTGTCGGGGGGAAGCCTCGCGGTCCTGGAATGGAAAGGGC
TGATCTCATGAGCGCGAATGCTGCCATTTTTGCGGAACAAGGGAAAGCGA
TCAACGAATCTGCTAGTAGAAATGTGTCTGTGCTGCTTGTTGCAAACCCC
GCGAACACTAATGCTCTCGTTGCATCTGCACACGCACCCGATATCGATCC
GGAGAGATTTATGGCAATGACTAGGTTGGATCATAATCGTGCGATTGGGC
AAGTTGCTGGAAAGACAGGAGCTATGGCTGGTGATGTTGAGAAGGTTGTG
ATTTGGGGTAATCACTCTGCTACCCAATATCCAGACTTGTCCAATGCTTT
AGTAGAAGGAAAGCCCGCGTTAGAGGTAATCAATGACATGCCCTGGGTGC
AGAAAGAGTTCATTCCTCGTGTGCAAAAGCGTGGCGCGGAGATTATCGGG
GCGAGCGGGAGGAGCTCGGCAAGTTCGGCAGCATCAGCCGCTATCGACCA
CGTGCGCGATCTATTCCTCGGATCTGGAAGCTCTTGGAAGAGCATGGCTA
TTCCATCTGATGGTTCCTACGGCATCGATTCAGGCATCTGGTTTTCAGTA
CCGTGTCTATGCCCTGGAGAAAGCATATATCAACGCATCTTGGACATTCC
CGCACCGAACGAGTTTTCAGCTGCCATGATTGATGCCACGAGAAAGGAAT
TACTGGAGGAACGAGATACTGTTCGGCACCTGTTGCCGGGGGGCACTACA
ACACAGACGACGACAAAGACGAGAAAGAGGCGGGCTAAGAAAGCAACGGC
ATAA

Coding sequence (CDS) from alignment at tig00025222_pilon:687457..688560+

>Gchil3694.t1 ID=Gchil3694.t1|Name=Gchil3694.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1104bp|location=Sequence derived from alignment at tig00025222_pilon:687457..688560+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTGCGCACATCTATTCATTCCGTGCGACGCGCACTCAGCACAAAGGC
TGCCGAACTTCCGGTAAAGAAGGTTGCTATAACGGGCGCCGCGGGGTCGA
TCGGGTACGCATTGCTAATGCGGATCGCCTCCGGTCAAATGCTCGGTCCA
TCCCAGCCGGTTGAGCTGCAACTGATCGAAACCGAACCCGGAATGAAGCC
TCTACAGGGTGTTGCAATGGAAATTATGGACGGAGCATTCCCTCTCGTAC
GAAAAGTTACGAAAACGTCAGATCCGAAGGAAGGATTTGGTGATGCCGAA
ATCGCGGTTCTTGTCGGGGGGAAGCCTCGCGGTCCTGGAATGGAAAGGGC
TGATCTCATGAGCGCGAATGCTGCCATTTTTGCGGAACAAGGGAAAGCGA
TCAACGAATCTGCTAGTAGAAATGTGTCTGTGCTGCTTGTTGCAAACCCC
GCGAACACTAATGCTCTCGTTGCATCTGCACACGCACCCGATATCGATCC
GGAGAGATTTATGGCAATGACTAGGTTGGATCATAATCGTGCGATTGGGC
AAGTTGCTGGAAAGACAGGAGCTATGGCTGGTGATGTTGAGAAGGTTGTG
ATTTGGGGTAATCACTCTGCTACCCAATATCCAGACTTGTCCAATGCTTT
AGTAGAAGGAAAGCCCGCGTTAGAGGTAATCAATGACATGCCCTGGGTGC
AGAAAGAGTTCATTCCTCGTGTGCAAAAGCGTGGCGCGGAGATTATCGGG
GCGAGCGGGAGGAGCTCGGCAAGTTCGGCAGCATCAGCCGCTATCGACCA
CGTGCGCGATCTATTCCTCGGATCTGGAAGCTCTTGGAAGAGCATGGCTA
TTCCATCTGATGGTTCCTACGGCATCGATTCAGGCATCTGGTTTTCAGTA
CCGTGTCTATGCCCTGGAGAAAGCATATATCAACGCATCTTGGACATTCC
CGCACCGAACGAGTTTTCAGCTGCCATGATTGATGCCACGAGAAAGGAAT
TACTGGAGGAACGAGATACTGTTCGGCACCTGTTGCCGGGGGGCACTACA
ACACAGACGACGACAAAGACGAGAAAGAGGCGGGCTAAGAAAGCAACGGC
ATAA