Gchil8477.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil8477.t1
Unique NameGchil8477.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length192
Homology
BLAST of Gchil8477.t1 vs. uniprot
Match: A0A1X6NUK8_PORUM (Uncharacterized protein (Fragment) n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NUK8_PORUM)

HSP 1 Score: 72.8 bits (177), Expect = 5.880e-13
Identity = 29/58 (50.00%), Postives = 41/58 (70.69%), Query Frame = 0
Query:   41 FRCYAHGCGKSFLRRYNLKVHLRVHTGERPYLCMRCSKRFKWRSSMAHHYKTHKRRQE 98
            + C   GCGK F +R+NLK HLR HTG++P++C  C++RF W+SS++ H   H RR E
Sbjct:   24 YSCPFDGCGKLFSKRFNLKAHLRKHTGDKPFVCRHCARRFMWKSSLSSHELGHARRSE 81          
BLAST of Gchil8477.t1 vs. uniprot
Match: A0A1X6PA74_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PA74_PORUM)

HSP 1 Score: 68.9 bits (167), Expect = 2.740e-10
Identity = 32/63 (50.79%), Postives = 39/63 (61.90%), Query Frame = 0
Query:   34 GPDSPSRFRCYAHGCGKSFLRRYNLKVHLRVHTGERPYLC---MRCSKRFKWRSSMAHHYKTH 93
            G  +P  + C + GC     RRYNL VH+R+HTGE+PY C     CS  F WRSSM HH +TH
Sbjct:   20 GAATPGGYACPSTGCVFRAARRYNLSVHMRLHTGEKPYKCDASAGCSATFAWRSSMLHHLRTH 82          
BLAST of Gchil8477.t1 vs. uniprot
Match: A0A7S1TA87_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TA87_9RHOD)

HSP 1 Score: 66.6 bits (161), Expect = 5.250e-10
Identity = 28/58 (48.28%), Postives = 37/58 (63.79%), Query Frame = 0
Query:   40 RFRCYAHGCGKSFLRRYNLKVHLRVHTGERPYLCMRCSKRFKWRSSMAHHYKTHKRRQ 97
            R +C    CGKSF  RYNL+VH RVHTG++P+ C  C K+F+W S +  H  +   RQ
Sbjct:   34 RVQCSVADCGKSFSTRYNLRVHQRVHTGDKPFSCTTCGKKFRWSSCLRGHLNSQHGRQ 91          
BLAST of Gchil8477.t1 vs. uniprot
Match: A0A7S3EJI5_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EJI5_9RHOD)

HSP 1 Score: 64.3 bits (155), Expect = 5.500e-10
Identity = 26/58 (44.83%), Postives = 37/58 (63.79%), Query Frame = 0
Query:   36 DSPSRFRCYAHGCGKSFLRRYNLKVHLRVHTGERPYLCMRCSKRFKWRSSMAHHYKTH 93
            D    + C   GC +SF +R+NL VH+R+HTG  P+ C  C K+F+WRSS+  H  +H
Sbjct:   34 DKGKIYLCPHKGCDRSFRKRWNLNVHMRIHTGATPFSCPGCKKQFRWRSSLKSHALSH 91          
BLAST of Gchil8477.t1 vs. uniprot
Match: A0A7S0BPB0_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BPB0_9RHOD)

HSP 1 Score: 65.1 bits (157), Expect = 1.280e-9
Identity = 28/55 (50.91%), Postives = 38/55 (69.09%), Query Frame = 0
Query:   41 FRCYAHGCGKSFLRRYNLKVHLRVHTGERPYLCM--RCSKRFKWRSSMAHHYKTH 93
            F C   GCGKSF ++YN+++H+R HT ERPY+C    C   FKWRSS+ +H + H
Sbjct:   55 FPCPWEGCGKSFNKKYNMQMHMRQHTNERPYVCSVNDCRLSFKWRSSLRNHLRYH 109          
BLAST of Gchil8477.t1 vs. uniprot
Match: A0A1X6NY10_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NY10_PORUM)

HSP 1 Score: 65.5 bits (158), Expect = 3.930e-9
Identity = 30/62 (48.39%), Postives = 40/62 (64.52%), Query Frame = 0
Query:   37 SPSRFRCYAH-GCGKSFLRRYNLKVHLRVHTGERPYLCM--RCSKRFKWRSSMAHHYKTHKR 95
            SPS   C  H GC ++F R YNLK H R+H+G+RP++C+   C K F+WRSS+  H   H R
Sbjct:   64 SPSERYCCPHPGCSRAFSRSYNLKAHRRIHSGDRPFVCVVPACGKTFRWRSSLTSHTAWHAR 125          
BLAST of Gchil8477.t1 vs. uniprot
Match: UPI001E1D372F (zinc finger protein 62-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D372F)

HSP 1 Score: 65.1 bits (157), Expect = 6.410e-9
Identity = 28/47 (59.57%), Postives = 33/47 (70.21%), Query Frame = 0
Query:   48 CGKSFLRRYNLKVHLRVHTGERPYLCMRCSKRFKWRSSMAHHYKTHK 94
            CGK+F   YNLKVH RVHTGERPY C +C + F +R+S   H  THK
Sbjct:   16 CGKTFKNAYNLKVHKRVHTGERPYQCQQCERAFMYRASYRVHVATHK 62          
BLAST of Gchil8477.t1 vs. uniprot
Match: A0A3B1K1B3_ASTMX (Uncharacterized protein n=1 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A3B1K1B3_ASTMX)

HSP 1 Score: 58.5 bits (140), Expect = 1.480e-8
Identity = 25/46 (54.35%), Postives = 31/46 (67.39%), Query Frame = 0
Query:   48 CGKSFLRRYNLKVHLRVHTGERPYLCMRCSKRFKWRSSMAHHYKTH 93
            CGK F   +NLK H RVHTGERPY+CM C KRF  + ++  H + H
Sbjct:    4 CGKGF-SHFNLKAHRRVHTGERPYICMACGKRFTQKCNLKRHQRIH 48          
BLAST of Gchil8477.t1 vs. uniprot
Match: UPI000C77A2F5 (transcription factor Ken-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C77A2F5)

HSP 1 Score: 63.5 bits (153), Expect = 1.660e-8
Identity = 28/70 (40.00%), Postives = 40/70 (57.14%), Query Frame = 0
Query:   26 MAAAAPDQGPDSPSRFRCYAHGCGKSFLRRYNLKVHLRVHTGERPYLCMRCSKRFKWRSSMAHHYKTHKR 95
            M +A    G D   +   + H C + FL + N+KVHLR HTGE+P+ C  CSK F+ ++ +  H   HKR
Sbjct:  318 MGSAGSSPGGDQGKKMMHHCHVCNRGFLNKSNIKVHLRTHTGEKPFGCEHCSKAFRQKAHLLKHMSIHKR 387          
BLAST of Gchil8477.t1 vs. uniprot
Match: W5M3F2_LEPOC (Zinc finger protein 219 n=1 Tax=Lepisosteus oculatus TaxID=7918 RepID=W5M3F2_LEPOC)

HSP 1 Score: 63.5 bits (153), Expect = 1.800e-8
Identity = 46/122 (37.70%), Postives = 55/122 (45.08%), Query Frame = 0
Query:   48 CGKSFLRRYNLKVHLRVHTGERPYLCMRCSKRFKWRSSMAHHYKTHKRRQEFVPPPRNMAHNFCNVVGPAFPASPVLPGSP---RSTAHLGAAAGGTSINIHSTTANPILHVPVEHFTLPTS 166
            CGK+F   ++LKVHLRVHTGERPY C  C        S+ +H + H R Q      RN A         A  AS +LPG P   R     GA  GG  +     T  P + VP      P S
Sbjct:  273 CGKTFRSSHHLKVHLRVHTGERPYKCPHCDYAGTQSGSLKYHLQRHHREQ------RNAA------AAAATGASVLLPGPPGAVREAGFRGARGGGRRLPQSWATEGPRVKVPKSSRRKPLS 382          
The following BLAST results are available for this feature:
BLAST of Gchil8477.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1X6NUK8_PORUM5.880e-1350.00Uncharacterized protein (Fragment) n=1 Tax=Porphyr... [more]
A0A1X6PA74_PORUM2.740e-1050.79Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A7S1TA87_9RHOD5.250e-1048.28Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A7S3EJI5_9RHOD5.500e-1044.83Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S0BPB0_9RHOD1.280e-950.91Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A1X6NY10_PORUM3.930e-948.39Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
UPI001E1D372F6.410e-959.57zinc finger protein 62-like n=1 Tax=Mercenaria mer... [more]
A0A3B1K1B3_ASTMX1.480e-854.35Uncharacterized protein n=1 Tax=Astyanax mexicanus... [more]
UPI000C77A2F51.660e-840.00transcription factor Ken-like n=1 Tax=Eurytemora a... [more]
W5M3F2_LEPOC1.800e-837.70Zinc finger protein 219 n=1 Tax=Lepisosteus oculat... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 41..65
e-value: 0.017
score: 24.3
coord: 71..93
e-value: 0.17
score: 20.9
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 73..93
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 43..65
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 71..98
score: 11.322948
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 41..70
score: 16.331676
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 30..64
e-value: 1.5E-11
score: 45.9
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 65..124
e-value: 1.7E-10
score: 42.9
NoneNo IPR availablePANTHERPTHR19818ZINC FINGER PROTEIN ZIC AND GLIcoord: 41..97
NoneNo IPR availablePANTHERPTHR19818:SF143LD47926P-RELATEDcoord: 41..97
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 47..93

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004450_piloncontigtig00004450_pilon:221257..221832 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8477.t1Gchil8477.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004450_pilon 221257..221832 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil8477.t1 ID=Gchil8477.t1|Name=Gchil8477.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=192bp
MGAMEVATNSPHIPAEKAAALEAARMAAAAPDQGPDSPSRFRCYAHGCGK
SFLRRYNLKVHLRVHTGERPYLCMRCSKRFKWRSSMAHHYKTHKRRQEFV
PPPRNMAHNFCNVVGPAFPASPVLPGSPRSTAHLGAAAGGTSINIHSTTA
NPILHVPVEHFTLPTSKPSEAILDSFIGADFVVIPEVGFHG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR036236Znf_C2H2_sf