Gchil5799.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5799.t1
Unique NameGchil5799.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length416
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004449_piloncontigtig00004449_pilon:224153..225400 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705937.1
PFAMs2-oxoacid_dh,Biotin_lipoyl
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC02727,RC02833
KEGG koko:K00658
KEGG ReactionR02570,R02571,R08549
KEGG Pathwayko00020,ko00310,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00310,map01100,map01110,map01120,map01130,map01200
KEGG ModuleM00009,M00011,M00032
GOsGO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0005840,GO:0006950,GO:0006979,GO:0008150,GO:0008270,GO:0016020,GO:0022626,GO:0032991,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0046872,GO:0046914,GO:0050896,GO:1990904
Evalue1.34e-139
EggNOG OGsCOG0508@1|root,KOG0559@2759|Eukaryota
EC2.3.1.61
Descriptiondihydrolipoyllysine-residue succinyltransferase activity
COG categoryC
BRITEbr01601,ko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5799Gchil5799Gracilaria chilensis NLEC103_M9 malegenetig00004449_pilon 224153..225400 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5799.t1.stop1Gchil5799.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004449_pilon 224153..224155 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5799.t1.CDS1Gchil5799.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004449_pilon 224153..225400 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5799.t1.exon1Gchil5799.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004449_pilon 224153..225400 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5799.t1.start1Gchil5799.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004449_pilon 225398..225400 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5799.t1Gchil5799.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004449_pilon 224153..225400 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5799.t1 ID=Gchil5799.t1|Name=Gchil5799.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=416bp
MLRVSRVARLAARLLDRYPRRVVPSRASCPSQWRALASQSLPVPHMGESI
TEGTVAEWLVKAGQGVSEDQVLVQLETDKIVVDVRAEKPGVLVERTAEEG
DVVAVGAQLGLIDYEKIAASPDAAPHAAPHTAIEPQQAESAPAVEAPQSE
EPSPSQPLSAPAPESTQSEPIDVLPPRNMTDSGERRVKMTRMRKRIAERL
KEAQNTAAMLTTFNEMDMSALIDLRREFKEAFEKRHGAKLGFMSAFVKAC
TVALLEQPEVNAFIDGDDIVYRDYVDISVAVSTPKGLVVPAVRGCENMNF
ATIEKTIVSLGERARSGELTLEEMQGGTFTISNGGVFGSLLSTPILNMPQ
SAILGMHIIQKRPVVVDDEIVIRPMMYVALSYDHRLIDGREAVTFLRRVK
TLIEDPRRLLLEIDI*
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spliced messenger RNA

>Gchil5799.t1 ID=Gchil5799.t1|Name=Gchil5799.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1248bp|location=Sequence derived from alignment at tig00004449_pilon:224153..225400- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTCGCGTCTCACGCGTCGCGCGTCTCGCCGCCAGGCTATTGGATCG
CTATCCGCGGCGCGTCGTCCCTTCCCGCGCGTCGTGTCCGTCGCAATGGC
GCGCTCTGGCGTCGCAGTCGCTGCCCGTGCCGCACATGGGCGAGTCCATT
ACCGAGGGTACCGTGGCCGAGTGGCTCGTTAAAGCCGGACAGGGCGTCTC
CGAGGATCAGGTCCTCGTGCAGCTGGAGACCGATAAGATCGTCGTCGATG
TGCGCGCGGAGAAGCCCGGGGTGCTCGTCGAGCGTACGGCGGAGGAGGGT
GACGTTGTTGCCGTCGGCGCTCAGTTGGGACTCATTGACTATGAAAAAAT
CGCCGCCTCGCCCGATGCCGCACCGCATGCTGCACCGCATACTGCTATCG
AGCCGCAGCAGGCCGAATCCGCCCCTGCCGTCGAGGCGCCGCAGTCTGAA
GAGCCGTCTCCTTCGCAACCGCTATCGGCTCCGGCGCCCGAGTCGACGCA
AAGTGAGCCCATCGATGTGCTTCCCCCTCGTAACATGACTGATAGCGGCG
AGCGTCGCGTCAAGATGACTCGCATGCGGAAGCGCATTGCCGAGCGTCTC
AAGGAAGCGCAGAACACCGCCGCCATGCTCACCACCTTCAACGAAATGGA
CATGTCCGCCCTCATCGATCTCAGAAGAGAGTTTAAAGAGGCCTTTGAAA
AGAGACATGGCGCCAAACTGGGTTTCATGTCCGCCTTCGTGAAAGCATGT
ACTGTTGCGTTGCTGGAACAGCCCGAGGTAAATGCCTTCATTGATGGTGA
CGATATTGTGTATCGCGACTATGTCGATATCTCTGTCGCAGTGTCGACAC
CGAAGGGACTTGTTGTGCCTGCGGTGAGGGGATGCGAAAATATGAATTTC
GCCACAATTGAAAAGACTATTGTCTCTCTTGGAGAACGTGCCCGTAGTGG
CGAACTCACCTTGGAGGAAATGCAGGGCGGTACCTTCACGATCAGCAACG
GTGGCGTATTTGGCAGTCTGCTCAGTACACCGATCTTGAACATGCCGCAA
AGTGCTATTCTTGGAATGCACATCATCCAGAAGAGACCGGTGGTTGTCGA
TGATGAAATTGTGATCCGACCAATGATGTACGTCGCGTTGAGCTACGATC
ATCGCCTCATTGACGGTAGGGAAGCTGTCACGTTCTTAAGAAGAGTCAAG
ACCCTCATCGAGGACCCGCGCCGTTTGCTCTTGGAGATCGATATCTAG
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protein sequence of Gchil5799.t1

>Gchil5799.t1 ID=Gchil5799.t1|Name=Gchil5799.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=416bp
MLRVSRVARLAARLLDRYPRRVVPSRASCPSQWRALASQSLPVPHMGESI
TEGTVAEWLVKAGQGVSEDQVLVQLETDKIVVDVRAEKPGVLVERTAEEG
DVVAVGAQLGLIDYEKIAASPDAAPHAAPHTAIEPQQAESAPAVEAPQSE
EPSPSQPLSAPAPESTQSEPIDVLPPRNMTDSGERRVKMTRMRKRIAERL
KEAQNTAAMLTTFNEMDMSALIDLRREFKEAFEKRHGAKLGFMSAFVKAC
TVALLEQPEVNAFIDGDDIVYRDYVDISVAVSTPKGLVVPAVRGCENMNF
ATIEKTIVSLGERARSGELTLEEMQGGTFTISNGGVFGSLLSTPILNMPQ
SAILGMHIIQKRPVVVDDEIVIRPMMYVALSYDHRLIDGREAVTFLRRVK
TLIEDPRRLLLEIDI*
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mRNA from alignment at tig00004449_pilon:224153..225400-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5799.t1 ID=Gchil5799.t1|Name=Gchil5799.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1248bp|location=Sequence derived from alignment at tig00004449_pilon:224153..225400- (Gracilaria chilensis NLEC103_M9 male)
ATGCTTCGCGTCTCACGCGTCGCGCGTCTCGCCGCCAGGCTATTGGATCG
CTATCCGCGGCGCGTCGTCCCTTCCCGCGCGTCGTGTCCGTCGCAATGGC
GCGCTCTGGCGTCGCAGTCGCTGCCCGTGCCGCACATGGGCGAGTCCATT
ACCGAGGGTACCGTGGCCGAGTGGCTCGTTAAAGCCGGACAGGGCGTCTC
CGAGGATCAGGTCCTCGTGCAGCTGGAGACCGATAAGATCGTCGTCGATG
TGCGCGCGGAGAAGCCCGGGGTGCTCGTCGAGCGTACGGCGGAGGAGGGT
GACGTTGTTGCCGTCGGCGCTCAGTTGGGACTCATTGACTATGAAAAAAT
CGCCGCCTCGCCCGATGCCGCACCGCATGCTGCACCGCATACTGCTATCG
AGCCGCAGCAGGCCGAATCCGCCCCTGCCGTCGAGGCGCCGCAGTCTGAA
GAGCCGTCTCCTTCGCAACCGCTATCGGCTCCGGCGCCCGAGTCGACGCA
AAGTGAGCCCATCGATGTGCTTCCCCCTCGTAACATGACTGATAGCGGCG
AGCGTCGCGTCAAGATGACTCGCATGCGGAAGCGCATTGCCGAGCGTCTC
AAGGAAGCGCAGAACACCGCCGCCATGCTCACCACCTTCAACGAAATGGA
CATGTCCGCCCTCATCGATCTCAGAAGAGAGTTTAAAGAGGCCTTTGAAA
AGAGACATGGCGCCAAACTGGGTTTCATGTCCGCCTTCGTGAAAGCATGT
ACTGTTGCGTTGCTGGAACAGCCCGAGGTAAATGCCTTCATTGATGGTGA
CGATATTGTGTATCGCGACTATGTCGATATCTCTGTCGCAGTGTCGACAC
CGAAGGGACTTGTTGTGCCTGCGGTGAGGGGATGCGAAAATATGAATTTC
GCCACAATTGAAAAGACTATTGTCTCTCTTGGAGAACGTGCCCGTAGTGG
CGAACTCACCTTGGAGGAAATGCAGGGCGGTACCTTCACGATCAGCAACG
GTGGCGTATTTGGCAGTCTGCTCAGTACACCGATCTTGAACATGCCGCAA
AGTGCTATTCTTGGAATGCACATCATCCAGAAGAGACCGGTGGTTGTCGA
TGATGAAATTGTGATCCGACCAATGATGTACGTCGCGTTGAGCTACGATC
ATCGCCTCATTGACGGTAGGGAAGCTGTCACGTTCTTAAGAAGAGTCAAG
ACCCTCATCGAGGACCCGCGCCGTTTGCTCTTGGAGATCGATATCTAG
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Coding sequence (CDS) from alignment at tig00004449_pilon:224153..225400-

>Gchil5799.t1 ID=Gchil5799.t1|Name=Gchil5799.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1248bp|location=Sequence derived from alignment at tig00004449_pilon:224153..225400- (Gracilaria chilensis NLEC103_M9 male)
ATGCTTCGCGTCTCACGCGTCGCGCGTCTCGCCGCCAGGCTATTGGATCG
CTATCCGCGGCGCGTCGTCCCTTCCCGCGCGTCGTGTCCGTCGCAATGGC
GCGCTCTGGCGTCGCAGTCGCTGCCCGTGCCGCACATGGGCGAGTCCATT
ACCGAGGGTACCGTGGCCGAGTGGCTCGTTAAAGCCGGACAGGGCGTCTC
CGAGGATCAGGTCCTCGTGCAGCTGGAGACCGATAAGATCGTCGTCGATG
TGCGCGCGGAGAAGCCCGGGGTGCTCGTCGAGCGTACGGCGGAGGAGGGT
GACGTTGTTGCCGTCGGCGCTCAGTTGGGACTCATTGACTATGAAAAAAT
CGCCGCCTCGCCCGATGCCGCACCGCATGCTGCACCGCATACTGCTATCG
AGCCGCAGCAGGCCGAATCCGCCCCTGCCGTCGAGGCGCCGCAGTCTGAA
GAGCCGTCTCCTTCGCAACCGCTATCGGCTCCGGCGCCCGAGTCGACGCA
AAGTGAGCCCATCGATGTGCTTCCCCCTCGTAACATGACTGATAGCGGCG
AGCGTCGCGTCAAGATGACTCGCATGCGGAAGCGCATTGCCGAGCGTCTC
AAGGAAGCGCAGAACACCGCCGCCATGCTCACCACCTTCAACGAAATGGA
CATGTCCGCCCTCATCGATCTCAGAAGAGAGTTTAAAGAGGCCTTTGAAA
AGAGACATGGCGCCAAACTGGGTTTCATGTCCGCCTTCGTGAAAGCATGT
ACTGTTGCGTTGCTGGAACAGCCCGAGGTAAATGCCTTCATTGATGGTGA
CGATATTGTGTATCGCGACTATGTCGATATCTCTGTCGCAGTGTCGACAC
CGAAGGGACTTGTTGTGCCTGCGGTGAGGGGATGCGAAAATATGAATTTC
GCCACAATTGAAAAGACTATTGTCTCTCTTGGAGAACGTGCCCGTAGTGG
CGAACTCACCTTGGAGGAAATGCAGGGCGGTACCTTCACGATCAGCAACG
GTGGCGTATTTGGCAGTCTGCTCAGTACACCGATCTTGAACATGCCGCAA
AGTGCTATTCTTGGAATGCACATCATCCAGAAGAGACCGGTGGTTGTCGA
TGATGAAATTGTGATCCGACCAATGATGTACGTCGCGTTGAGCTACGATC
ATCGCCTCATTGACGGTAGGGAAGCTGTCACGTTCTTAAGAAGAGTCAAG
ACCCTCATCGAGGACCCGCGCCGTTTGCTCTTGGAGATCGATATCTAG
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