Gchil5807.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil5807.t1
Unique Name	Gchil5807.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	624

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004449_pilon	contig	tig00004449_pilon:335324..337388 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703006.1
PFAMs	Peptidase_C97
Max annot lvl	2759\|Eukaryota
Evalue	9.83e-43
EggNOG OGs	KOG0324@1\|root,KOG0324@2759\|Eukaryota
Description	Lys63-specific deubiquitinase activity
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil5807	Gchil5807	Gracilaria chilensis NLEC103_M9 male	gene	tig00004449_pilon 335324..337388 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5807.t1	Gchil5807.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004449_pilon 335324..337388 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5807.t1.start1	Gchil5807.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004449_pilon 335324..335326 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5807.t1.CDS1	Gchil5807.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004449_pilon 335324..336531 +
Gchil5807.t1.CDS2	Gchil5807.t1.CDS2	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004449_pilon 336725..337388 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5807.t1.exon1	Gchil5807.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004449_pilon 335324..336531 +
Gchil5807.t1.exon2	Gchil5807.t1.exon2	Gracilaria chilensis NLEC103_M9 male	exon	tig00004449_pilon 336725..337388 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5807.t1.intron1	Gchil5807.t1.intron1	Gracilaria chilensis NLEC103_M9 male	intron	tig00004449_pilon 336532..336724 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil5807.t1.stop1	Gchil5807.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004449_pilon 337386..337388 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004449_pilon:335324..337388+
coding sequence from alignment at tig00004449_pilon:335324..337388+

mRNA sequence

>Gchil5807.t1 ID=Gchil5807.t1|Name=Gchil5807.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=624bp
MSDPRQRGALNIRNHITQPIDVDAPIDYECHFPAGDKSTTPGSGFKSVKN
AAGHNWTPYEPLSPFYKWRSGVCGDNLYGAQDHLRGGKYYWDAKRVRTYE
QGSIVFFESEIITHHNGYYEFYICDIDKCGDDISPRCFREGHCTRLIRAK
GPCDSGDHPDCGPIDRNNPGRWYLPCVHKEPAMVGGVSRSMAYVLPPWVV
CDHCVIQWYWTAANTCNPPGVAEYFTGPDAPRWRPCRGQGGAIGGWAGSK
GTCGGADFPEEYWQCSDVRIVWRGAPPKGGHGSEAQHVPHHEPPPQEPSH
HEPHQSDKAGSQAHTGSSTSGISQPSSFASTGSGTFVGARSKDQSGRNAP
DEEAGPSEGAGNWEQTSKDSGGSPETTGDEGETSDYDATTHNGEVDTASA
LGLGNFAASELSMAMLSSDKLSALPLPPGPGVPVELNVYDLQHPENPDTV
STLNGYLYAFGVGLYHSGVCVYGVEYAYGGHPGSHTGVFTTPPKKAPDAR
FRQTLLIGFTRLTTDQVRELVDAMSSVWLGKTYNLLTRNCNHFASDLCEM
LTGKPAPEWVNRMAWLGEKAKFLLPKGFDTPTAAPVTAERAREEQQLRQL
IEGALTDDDDFEHDNRPDPDHDQ*

spliced messenger RNA

>Gchil5807.t1 ID=Gchil5807.t1|Name=Gchil5807.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1872bp|location=Sequence derived from alignment at tig00004449_pilon:335324..337388+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGACCCACGGCAAAGAGGCGCGCTTAATATCCGGAATCATATCAC
TCAACCAATCGATGTTGATGCGCCGATAGACTACGAATGTCATTTTCCGG
CTGGCGACAAGTCAACAACGCCAGGCTCTGGATTTAAGTCTGTAAAAAAT
GCTGCCGGTCACAACTGGACTCCATATGAACCTCTGAGTCCGTTTTACAA
ATGGCGAAGCGGAGTGTGTGGTGACAATTTGTACGGTGCTCAGGATCATT
TGCGGGGTGGAAAGTACTACTGGGATGCCAAGCGAGTGCGAACTTATGAA
CAAGGCAGCATTGTGTTTTTCGAGTCGGAGATTATCACGCATCACAACGG
GTACTACGAGTTCTACATTTGTGACATTGATAAATGCGGTGATGATATTT
CGCCGAGATGCTTCCGAGAGGGCCACTGCACGAGATTGATCCGCGCCAAA
GGTCCATGCGACTCTGGTGACCACCCAGACTGCGGACCAATCGACAGAAA
TAATCCAGGTCGTTGGTATCTTCCGTGCGTGCACAAGGAGCCCGCGATGG
TGGGAGGGGTGTCAAGGTCGATGGCATATGTGCTGCCTCCGTGGGTGGTG
TGCGATCATTGTGTGATTCAATGGTACTGGACGGCGGCGAATACGTGCAA
TCCTCCCGGTGTGGCGGAATACTTCACTGGACCAGATGCTCCACGTTGGA
GACCGTGCCGCGGACAGGGTGGCGCTATTGGCGGATGGGCGGGTTCAAAG
GGAACGTGTGGCGGAGCGGACTTTCCAGAAGAGTATTGGCAGTGCTCCGA
CGTTAGGATAGTTTGGCGCGGAGCGCCGCCGAAGGGTGGCCACGGAAGCG
AGGCGCAGCATGTGCCGCATCATGAGCCGCCGCCGCAAGAGCCGTCACAT
CATGAACCGCACCAAAGCGACAAAGCTGGAAGCCAAGCGCACACGGGAAG
CTCGACAAGCGGCATATCTCAGCCGTCCTCGTTCGCGAGCACCGGCAGCG
GTACGTTTGTCGGGGCGCGCAGCAAGGACCAAAGCGGAAGAAACGCCCCT
GACGAGGAAGCCGGTCCAAGCGAAGGCGCCGGGAACTGGGAACAGACCTC
GAAGGACAGCGGGGGCAGTCCGGAAACAACTGGGGACGAAGGTGAGACGT
CCGACTACGATGCCACAACACACAACGGCGAGGTGGACACGGCGTCAGCC
TTGGGCCTTGGCAACTTCGCAGCTTCCGAGCTTTCCATGGCCATGTTATC
TTCTGATAAGCTTTCTGCTCTGCCGCTACCGCCAGGCCCTGGTGTACCTG
TTGAACTCAACGTATACGACCTGCAACATCCGGAGAATCCAGACACCGTC
TCCACGCTCAACGGCTACCTTTACGCCTTTGGCGTCGGTCTGTATCACAG
CGGCGTCTGCGTCTACGGCGTCGAGTATGCCTACGGCGGGCATCCTGGTT
CTCATACCGGCGTTTTTACCACCCCCCCGAAAAAGGCCCCGGACGCTCGC
TTTCGACAGACGTTGCTTATCGGTTTCACGCGTCTCACTACCGACCAGGT
TCGAGAACTTGTGGACGCCATGTCCTCTGTCTGGTTGGGAAAGACCTATA
ACTTGCTCACGCGAAACTGCAATCATTTTGCGAGCGACCTCTGTGAAATG
CTCACTGGAAAGCCTGCTCCAGAGTGGGTTAACCGAATGGCTTGGCTTGG
TGAGAAGGCAAAGTTTTTGTTGCCCAAGGGATTTGACACACCCACTGCTG
CGCCCGTCACAGCGGAGAGGGCACGCGAGGAACAGCAACTTCGGCAACTC
ATCGAAGGCGCGCTTACAGACGATGATGATTTcgaacacgacaatcgacc
agatcctgaccacgaccaGTAA

protein sequence of Gchil5807.t1

>Gchil5807.t1 ID=Gchil5807.t1|Name=Gchil5807.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=624bp
MSDPRQRGALNIRNHITQPIDVDAPIDYECHFPAGDKSTTPGSGFKSVKN
AAGHNWTPYEPLSPFYKWRSGVCGDNLYGAQDHLRGGKYYWDAKRVRTYE
QGSIVFFESEIITHHNGYYEFYICDIDKCGDDISPRCFREGHCTRLIRAK
GPCDSGDHPDCGPIDRNNPGRWYLPCVHKEPAMVGGVSRSMAYVLPPWVV
CDHCVIQWYWTAANTCNPPGVAEYFTGPDAPRWRPCRGQGGAIGGWAGSK
GTCGGADFPEEYWQCSDVRIVWRGAPPKGGHGSEAQHVPHHEPPPQEPSH
HEPHQSDKAGSQAHTGSSTSGISQPSSFASTGSGTFVGARSKDQSGRNAP
DEEAGPSEGAGNWEQTSKDSGGSPETTGDEGETSDYDATTHNGEVDTASA
LGLGNFAASELSMAMLSSDKLSALPLPPGPGVPVELNVYDLQHPENPDTV
STLNGYLYAFGVGLYHSGVCVYGVEYAYGGHPGSHTGVFTTPPKKAPDAR
FRQTLLIGFTRLTTDQVRELVDAMSSVWLGKTYNLLTRNCNHFASDLCEM
LTGKPAPEWVNRMAWLGEKAKFLLPKGFDTPTAAPVTAERAREEQQLRQL
IEGALTDDDDFEHDNRPDPDHDQ*

mRNA from alignment at tig00004449_pilon:335324..337388+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil5807.t1 ID=Gchil5807.t1|Name=Gchil5807.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2065bp|location=Sequence derived from alignment at tig00004449_pilon:335324..337388+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGCGACCCACGGCAAAGAGGCGCGCTTAATATCCGGAATCATATCAC
TCAACCAATCGATGTTGATGCGCCGATAGACTACGAATGTCATTTTCCGG
CTGGCGACAAGTCAACAACGCCAGGCTCTGGATTTAAGTCTGTAAAAAAT
GCTGCCGGTCACAACTGGACTCCATATGAACCTCTGAGTCCGTTTTACAA
ATGGCGAAGCGGAGTGTGTGGTGACAATTTGTACGGTGCTCAGGATCATT
TGCGGGGTGGAAAGTACTACTGGGATGCCAAGCGAGTGCGAACTTATGAA
CAAGGCAGCATTGTGTTTTTCGAGTCGGAGATTATCACGCATCACAACGG
GTACTACGAGTTCTACATTTGTGACATTGATAAATGCGGTGATGATATTT
CGCCGAGATGCTTCCGAGAGGGCCACTGCACGAGATTGATCCGCGCCAAA
GGTCCATGCGACTCTGGTGACCACCCAGACTGCGGACCAATCGACAGAAA
TAATCCAGGTCGTTGGTATCTTCCGTGCGTGCACAAGGAGCCCGCGATGG
TGGGAGGGGTGTCAAGGTCGATGGCATATGTGCTGCCTCCGTGGGTGGTG
TGCGATCATTGTGTGATTCAATGGTACTGGACGGCGGCGAATACGTGCAA
TCCTCCCGGTGTGGCGGAATACTTCACTGGACCAGATGCTCCACGTTGGA
GACCGTGCCGCGGACAGGGTGGCGCTATTGGCGGATGGGCGGGTTCAAAG
GGAACGTGTGGCGGAGCGGACTTTCCAGAAGAGTATTGGCAGTGCTCCGA
CGTTAGGATAGTTTGGCGCGGAGCGCCGCCGAAGGGTGGCCACGGAAGCG
AGGCGCAGCATGTGCCGCATCATGAGCCGCCGCCGCAAGAGCCGTCACAT
CATGAACCGCACCAAAGCGACAAAGCTGGAAGCCAAGCGCACACGGGAAG
CTCGACAAGCGGCATATCTCAGCCGTCCTCGTTCGCGAGCACCGGCAGCG
GTACGTTTGTCGGGGCGCGCAGCAAGGACCAAAGCGGAAGAAACGCCCCT
GACGAGGAAGCCGGTCCAAGCGAAGGCGCCGGGAACTGGGAACAGACCTC
GAAGGACAGCGGGGGCAGTCCGGAAACAACTGGGGACGAAGGTGAGACGT
CCGACTACGATGCCACAACACACAACGGCGAGGTGGACACGGCGTCAGCC
TTGGGCCTGTAGGCGCAGCGCCGATACTCCTTGGTATTCGTGTGTACTGT
ATACGGAAAGACCGGTAGCAGATTTTGAATAAATTGGTAGAGCATTTGTA
CAGAACGCCTGATTAGCATTTGACACGGCAGTAATCCCACCCTTACCCTT
CTTCAACACTAAACTTCGTCTCTCCCATCGTTCTTTGCTGTGGCGCTTCA
GTGGCAACTTCGCAGCTTCCGAGCTTTCCATGGCCATGTTATCTTCTGAT
AAGCTTTCTGCTCTGCCGCTACCGCCAGGCCCTGGTGTACCTGTTGAACT
CAACGTATACGACCTGCAACATCCGGAGAATCCAGACACCGTCTCCACGC
TCAACGGCTACCTTTACGCCTTTGGCGTCGGTCTGTATCACAGCGGCGTC
TGCGTCTACGGCGTCGAGTATGCCTACGGCGGGCATCCTGGTTCTCATAC
CGGCGTTTTTACCACCCCCCCGAAAAAGGCCCCGGACGCTCGCTTTCGAC
AGACGTTGCTTATCGGTTTCACGCGTCTCACTACCGACCAGGTTCGAGAA
CTTGTGGACGCCATGTCCTCTGTCTGGTTGGGAAAGACCTATAACTTGCT
CACGCGAAACTGCAATCATTTTGCGAGCGACCTCTGTGAAATGCTCACTG
GAAAGCCTGCTCCAGAGTGGGTTAACCGAATGGCTTGGCTTGGTGAGAAG
GCAAAGTTTTTGTTGCCCAAGGGATTTGACACACCCACTGCTGCGCCCGT
CACAGCGGAGAGGGCACGCGAGGAACAGCAACTTCGGCAACTCATCGAAG
GCGCGCTTACAGACGATGATGATTTcgaacacgacaatcgaccagatcct
gaccacgaccaGTAA

Coding sequence (CDS) from alignment at tig00004449_pilon:335324..337388+

>Gchil5807.t1 ID=Gchil5807.t1|Name=Gchil5807.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1872bp|location=Sequence derived from alignment at tig00004449_pilon:335324..337388+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGCGACCCACGGCAAAGAGGCGCGCTTAATATCCGGAATCATATCAC
TCAACCAATCGATGTTGATGCGCCGATAGACTACGAATGTCATTTTCCGG
CTGGCGACAAGTCAACAACGCCAGGCTCTGGATTTAAGTCTGTAAAAAAT
GCTGCCGGTCACAACTGGACTCCATATGAACCTCTGAGTCCGTTTTACAA
ATGGCGAAGCGGAGTGTGTGGTGACAATTTGTACGGTGCTCAGGATCATT
TGCGGGGTGGAAAGTACTACTGGGATGCCAAGCGAGTGCGAACTTATGAA
CAAGGCAGCATTGTGTTTTTCGAGTCGGAGATTATCACGCATCACAACGG
GTACTACGAGTTCTACATTTGTGACATTGATAAATGCGGTGATGATATTT
CGCCGAGATGCTTCCGAGAGGGCCACTGCACGAGATTGATCCGCGCCAAA
GGTCCATGCGACTCTGGTGACCACCCAGACTGCGGACCAATCGACAGAAA
TAATCCAGGTCGTTGGTATCTTCCGTGCGTGCACAAGGAGCCCGCGATGG
TGGGAGGGGTGTCAAGGTCGATGGCATATGTGCTGCCTCCGTGGGTGGTG
TGCGATCATTGTGTGATTCAATGGTACTGGACGGCGGCGAATACGTGCAA
TCCTCCCGGTGTGGCGGAATACTTCACTGGACCAGATGCTCCACGTTGGA
GACCGTGCCGCGGACAGGGTGGCGCTATTGGCGGATGGGCGGGTTCAAAG
GGAACGTGTGGCGGAGCGGACTTTCCAGAAGAGTATTGGCAGTGCTCCGA
CGTTAGGATAGTTTGGCGCGGAGCGCCGCCGAAGGGTGGCCACGGAAGCG
AGGCGCAGCATGTGCCGCATCATGAGCCGCCGCCGCAAGAGCCGTCACAT
CATGAACCGCACCAAAGCGACAAAGCTGGAAGCCAAGCGCACACGGGAAG
CTCGACAAGCGGCATATCTCAGCCGTCCTCGTTCGCGAGCACCGGCAGCG
GTACGTTTGTCGGGGCGCGCAGCAAGGACCAAAGCGGAAGAAACGCCCCT
GACGAGGAAGCCGGTCCAAGCGAAGGCGCCGGGAACTGGGAACAGACCTC
GAAGGACAGCGGGGGCAGTCCGGAAACAACTGGGGACGAAGGTGAGACGT
CCGACTACGATGCCACAACACACAACGGCGAGGTGGACACGGCGTCAGCC
TTGGGCCTTGGCAACTTCGCAGCTTCCGAGCTTTCCATGGCCATGTTATC
TTCTGATAAGCTTTCTGCTCTGCCGCTACCGCCAGGCCCTGGTGTACCTG
TTGAACTCAACGTATACGACCTGCAACATCCGGAGAATCCAGACACCGTC
TCCACGCTCAACGGCTACCTTTACGCCTTTGGCGTCGGTCTGTATCACAG
CGGCGTCTGCGTCTACGGCGTCGAGTATGCCTACGGCGGGCATCCTGGTT
CTCATACCGGCGTTTTTACCACCCCCCCGAAAAAGGCCCCGGACGCTCGC
TTTCGACAGACGTTGCTTATCGGTTTCACGCGTCTCACTACCGACCAGGT
TCGAGAACTTGTGGACGCCATGTCCTCTGTCTGGTTGGGAAAGACCTATA
ACTTGCTCACGCGAAACTGCAATCATTTTGCGAGCGACCTCTGTGAAATG
CTCACTGGAAAGCCTGCTCCAGAGTGGGTTAACCGAATGGCTTGGCTTGG
TGAGAAGGCAAAGTTTTTGTTGCCCAAGGGATTTGACACACCCACTGCTG
CGCCCGTCACAGCGGAGAGGGCACGCGAGGAACAGCAACTTCGGCAACTC
ATCGAAGGCGCGCTTACAGACGATGATGATTTcgaacacgacaatcgacc
agatcctgaccacgaccaGTAA