Gchil10122.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil10122.t1
Unique Name	Gchil10122.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	488

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004442_pilon	contig	tig00004442_pilon:1082892..1084355 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	8010.XP_010873429.1
Preferred name	dhh
PFAMs	HH_signal,Hint
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K11990
KEGG Pathway	ko04340,map04340
KEGG Module	M00678
Evalue	4.67e-14
EggNOG OGs	KOG3638@1\|root,KOG3638@2759\|Eukaryota,39W5S@33154\|Opisthokonta,3BGT1@33208\|Metazoa,3D5V2@33213\|Bilateria,489E9@7711\|Chordata,4978D@7742\|Vertebrata,49U4C@7898\|Actinopterygii
Description	Intercellular signal essential for a variety of patterning events during development
COG category	T
BRITE	ko00000,ko00001,ko00002,ko01002

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil10122	Gchil10122	Gracilaria chilensis NLEC103_M9 male	gene	tig00004442_pilon 1082892..1084355 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10122.t1.start1	Gchil10122.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004442_pilon 1082892..1082894 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10122.t1.CDS1	Gchil10122.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004442_pilon 1082892..1084355 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10122.t1.exon1	Gchil10122.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004442_pilon 1082892..1084355 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10122.t1.stop1	Gchil10122.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004442_pilon 1084353..1084355 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil10122.t1	Gchil10122.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004442_pilon 1082892..1084355 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004442_pilon:1082892..1084355+
coding sequence from alignment at tig00004442_pilon:1082892..1084355+

mRNA sequence

>Gchil10122.t1 ID=Gchil10122.t1|Name=Gchil10122.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=488bp
MARFSFLLSLFLAASLVIAQENDGSLPDSAAQGVNAVIPNPRPTLYGLIA
ESERHRILFNLVDSIPEIKTALDEPGARFTVFPPVDQAFVRLARELSPGI
QFNESNPAEVIIALGAAIEKIREVPMFVGVVGLVWYHVLEGAFTYGMLAE
MGTARTNFNGLNLTFADGAVIDGDDSRGNSSAGPRNIFTLNGWAHQVYGV
LLPFNLQAAVDLVVAAPSAAPEVPTAEPTPVPVGSAPSVTAPVAVEETDD
GIAAPVEATDDGVAAPVEETDDGQAVAVPVDGGTDTTDESTEGEASVEAS
PDDDDDVCFPASATVTTVEGESVRMADLQPGQYIHHNEHGASSRVFFFTH
RTAKPELTFYRISTASGHAVTMTGKHYLYANGRLTAAHAVQVGQMLRTKA
GESAVTSVHRVKETGLYAPHSMHGDLVVDGIVVSSYSRTVEPRLAHALLM
PLRWLARATGSNEVLPGMFYEGGRGLERFVPEGQAKY*

spliced messenger RNA

>Gchil10122.t1 ID=Gchil10122.t1|Name=Gchil10122.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1464bp|location=Sequence derived from alignment at tig00004442_pilon:1082892..1084355+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCGCTTCTCGTTTCTTCTTTCCCTTTTCCTGGCCGCCTCGCTTGT
CATCGCCCAGGAGAACGACGGGTCCTTGCCCGATTCGGCCGCACAAGGTG
TTAACGCTGTCATTCCGAACCCAAGACCAACTCTGTATGGGCTTATTGCG
GAGTCGGAAAGACATAGGATTTTGTTCAATCTCGTCGATTCTATTCCCGA
GATAAAGACGGCCTTGGACGAGCCCGGGGCCAGATTCACTGTTTTCCCTC
CCGTCGATCAGGCCTTCGTCCGTTTGGCTCGGGAGCTCAGCCCCGGCATT
CAGTTTAACGAGAGTAATCCTGCGGAAGTCATTATCGCCCTTGGTGCTGC
CATTGAAAAGATTAGAGAAGTTCCAATGTTTGTTGGCGTCGTAGGACTCG
TTTGGTATCACGTTTTGGAAGGAGCTTTCACCTACGGAATGCTGGCGGAG
ATGGGAACGGCCAGGACCAACTTTAATGGTCTAAACCTAACATTTGCCGA
TGGTGCCGTGATCGACGGTGACGACAGCCGAGGGAACTCCTCCGCCGGCC
CGAGAAACATCTTTACTCTTAACGGATGGGCCCACCAGGTTTATGGTGTC
TTGTTGCCGTTTAACCTCCAGGCTGCCGTTGACCTTGTCGTGGCTGCTCC
CTCCGCCGCACCTGAGGTCCCCACAGCCGAGCCCACTCCAGTGCCAGTTG
GGTCTGCTCCATCTGTTACGGCTCCAGTCGCTGTTGAGGAAACAGATGAC
GGTATAGCAGCCCCTGTTGAGGCTACAGATGACGGCGTAGCAGCCCCTGT
TGAGGAAACGGATGACGGCCAAGCAGTAGCTGTTCCCGTTGATGGCGGCA
CTGACACTACTGATGAATCCACAGAAGGTGAAGCATCCGTGGAGGCTTCC
CCTGACGATGACGATGACGTTTGCTTCCCGGCCTCTGCGACAGTAACTAC
AGTCGAAGGTGAATCCGTCCGTATGGCAGATCTTCAGCCGGGACAGTACA
TCCATCACAACGAACATGGTGCCTCCTCTCGTGTATTCTTTTTCACTCAT
CGCACCGCCAAGCCGGAACTGACATTCTATCGTATCTCGACAGCATCAGG
TCATGCCGTAACTATGACCGGTAAGCATTACCTGTATGCCAACGGTCGCC
TGACTGCCGCACATGCTGTTCAGGTGGGCCAGATGCTTCGAACGAAGGCT
GGTGAAAGCGCGGTCACTTCCGTGCACCGTGTGAAAGAAACTGGATTGTA
TGCTCCGCATTCCATGCATGGAGATCTCGTTGTTGATGGAATCGTCGTGA
GCAGCTACTCTCGCACTGTTGAGCCTCGTCTCGCTCACGCACTTCTTATG
CCCCTCCGCTGGCTAGCTCGCGCAACTGGTTCGAATGAAGTGCTTCCGGG
AATGTTCTATGAAGGTGGCCGAGGGTTGGAGAGGTTTGTACCGGAAGGGC
AGGCTAAGTACTAG

protein sequence of Gchil10122.t1

>Gchil10122.t1 ID=Gchil10122.t1|Name=Gchil10122.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=488bp
MARFSFLLSLFLAASLVIAQENDGSLPDSAAQGVNAVIPNPRPTLYGLIA
ESERHRILFNLVDSIPEIKTALDEPGARFTVFPPVDQAFVRLARELSPGI
QFNESNPAEVIIALGAAIEKIREVPMFVGVVGLVWYHVLEGAFTYGMLAE
MGTARTNFNGLNLTFADGAVIDGDDSRGNSSAGPRNIFTLNGWAHQVYGV
LLPFNLQAAVDLVVAAPSAAPEVPTAEPTPVPVGSAPSVTAPVAVEETDD
GIAAPVEATDDGVAAPVEETDDGQAVAVPVDGGTDTTDESTEGEASVEAS
PDDDDDVCFPASATVTTVEGESVRMADLQPGQYIHHNEHGASSRVFFFTH
RTAKPELTFYRISTASGHAVTMTGKHYLYANGRLTAAHAVQVGQMLRTKA
GESAVTSVHRVKETGLYAPHSMHGDLVVDGIVVSSYSRTVEPRLAHALLM
PLRWLARATGSNEVLPGMFYEGGRGLERFVPEGQAKY*

mRNA from alignment at tig00004442_pilon:1082892..1084355+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil10122.t1 ID=Gchil10122.t1|Name=Gchil10122.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1464bp|location=Sequence derived from alignment at tig00004442_pilon:1082892..1084355+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTCGCTTCTCGTTTCTTCTTTCCCTTTTCCTGGCCGCCTCGCTTGT
CATCGCCCAGGAGAACGACGGGTCCTTGCCCGATTCGGCCGCACAAGGTG
TTAACGCTGTCATTCCGAACCCAAGACCAACTCTGTATGGGCTTATTGCG
GAGTCGGAAAGACATAGGATTTTGTTCAATCTCGTCGATTCTATTCCCGA
GATAAAGACGGCCTTGGACGAGCCCGGGGCCAGATTCACTGTTTTCCCTC
CCGTCGATCAGGCCTTCGTCCGTTTGGCTCGGGAGCTCAGCCCCGGCATT
CAGTTTAACGAGAGTAATCCTGCGGAAGTCATTATCGCCCTTGGTGCTGC
CATTGAAAAGATTAGAGAAGTTCCAATGTTTGTTGGCGTCGTAGGACTCG
TTTGGTATCACGTTTTGGAAGGAGCTTTCACCTACGGAATGCTGGCGGAG
ATGGGAACGGCCAGGACCAACTTTAATGGTCTAAACCTAACATTTGCCGA
TGGTGCCGTGATCGACGGTGACGACAGCCGAGGGAACTCCTCCGCCGGCC
CGAGAAACATCTTTACTCTTAACGGATGGGCCCACCAGGTTTATGGTGTC
TTGTTGCCGTTTAACCTCCAGGCTGCCGTTGACCTTGTCGTGGCTGCTCC
CTCCGCCGCACCTGAGGTCCCCACAGCCGAGCCCACTCCAGTGCCAGTTG
GGTCTGCTCCATCTGTTACGGCTCCAGTCGCTGTTGAGGAAACAGATGAC
GGTATAGCAGCCCCTGTTGAGGCTACAGATGACGGCGTAGCAGCCCCTGT
TGAGGAAACGGATGACGGCCAAGCAGTAGCTGTTCCCGTTGATGGCGGCA
CTGACACTACTGATGAATCCACAGAAGGTGAAGCATCCGTGGAGGCTTCC
CCTGACGATGACGATGACGTTTGCTTCCCGGCCTCTGCGACAGTAACTAC
AGTCGAAGGTGAATCCGTCCGTATGGCAGATCTTCAGCCGGGACAGTACA
TCCATCACAACGAACATGGTGCCTCCTCTCGTGTATTCTTTTTCACTCAT
CGCACCGCCAAGCCGGAACTGACATTCTATCGTATCTCGACAGCATCAGG
TCATGCCGTAACTATGACCGGTAAGCATTACCTGTATGCCAACGGTCGCC
TGACTGCCGCACATGCTGTTCAGGTGGGCCAGATGCTTCGAACGAAGGCT
GGTGAAAGCGCGGTCACTTCCGTGCACCGTGTGAAAGAAACTGGATTGTA
TGCTCCGCATTCCATGCATGGAGATCTCGTTGTTGATGGAATCGTCGTGA
GCAGCTACTCTCGCACTGTTGAGCCTCGTCTCGCTCACGCACTTCTTATG
CCCCTCCGCTGGCTAGCTCGCGCAACTGGTTCGAATGAAGTGCTTCCGGG
AATGTTCTATGAAGGTGGCCGAGGGTTGGAGAGGTTTGTACCGGAAGGGC
AGGCTAAGTACTAG

Coding sequence (CDS) from alignment at tig00004442_pilon:1082892..1084355+

>Gchil10122.t1 ID=Gchil10122.t1|Name=Gchil10122.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1464bp|location=Sequence derived from alignment at tig00004442_pilon:1082892..1084355+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTCGCTTCTCGTTTCTTCTTTCCCTTTTCCTGGCCGCCTCGCTTGT
CATCGCCCAGGAGAACGACGGGTCCTTGCCCGATTCGGCCGCACAAGGTG
TTAACGCTGTCATTCCGAACCCAAGACCAACTCTGTATGGGCTTATTGCG
GAGTCGGAAAGACATAGGATTTTGTTCAATCTCGTCGATTCTATTCCCGA
GATAAAGACGGCCTTGGACGAGCCCGGGGCCAGATTCACTGTTTTCCCTC
CCGTCGATCAGGCCTTCGTCCGTTTGGCTCGGGAGCTCAGCCCCGGCATT
CAGTTTAACGAGAGTAATCCTGCGGAAGTCATTATCGCCCTTGGTGCTGC
CATTGAAAAGATTAGAGAAGTTCCAATGTTTGTTGGCGTCGTAGGACTCG
TTTGGTATCACGTTTTGGAAGGAGCTTTCACCTACGGAATGCTGGCGGAG
ATGGGAACGGCCAGGACCAACTTTAATGGTCTAAACCTAACATTTGCCGA
TGGTGCCGTGATCGACGGTGACGACAGCCGAGGGAACTCCTCCGCCGGCC
CGAGAAACATCTTTACTCTTAACGGATGGGCCCACCAGGTTTATGGTGTC
TTGTTGCCGTTTAACCTCCAGGCTGCCGTTGACCTTGTCGTGGCTGCTCC
CTCCGCCGCACCTGAGGTCCCCACAGCCGAGCCCACTCCAGTGCCAGTTG
GGTCTGCTCCATCTGTTACGGCTCCAGTCGCTGTTGAGGAAACAGATGAC
GGTATAGCAGCCCCTGTTGAGGCTACAGATGACGGCGTAGCAGCCCCTGT
TGAGGAAACGGATGACGGCCAAGCAGTAGCTGTTCCCGTTGATGGCGGCA
CTGACACTACTGATGAATCCACAGAAGGTGAAGCATCCGTGGAGGCTTCC
CCTGACGATGACGATGACGTTTGCTTCCCGGCCTCTGCGACAGTAACTAC
AGTCGAAGGTGAATCCGTCCGTATGGCAGATCTTCAGCCGGGACAGTACA
TCCATCACAACGAACATGGTGCCTCCTCTCGTGTATTCTTTTTCACTCAT
CGCACCGCCAAGCCGGAACTGACATTCTATCGTATCTCGACAGCATCAGG
TCATGCCGTAACTATGACCGGTAAGCATTACCTGTATGCCAACGGTCGCC
TGACTGCCGCACATGCTGTTCAGGTGGGCCAGATGCTTCGAACGAAGGCT
GGTGAAAGCGCGGTCACTTCCGTGCACCGTGTGAAAGAAACTGGATTGTA
TGCTCCGCATTCCATGCATGGAGATCTCGTTGTTGATGGAATCGTCGTGA
GCAGCTACTCTCGCACTGTTGAGCCTCGTCTCGCTCACGCACTTCTTATG
CCCCTCCGCTGGCTAGCTCGCGCAACTGGTTCGAATGAAGTGCTTCCGGG
AATGTTCTATGAAGGTGGCCGAGGGTTGGAGAGGTTTGTACCGGAAGGGC
AGGCTAAGTACTAG