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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Seed ortholog | 248742.XP_005644732.1 |
PFAMs | AAA |
Max annot lvl | 3041|Chlorophyta |
KEGG ko | ko:K03066 |
KEGG Pathway | ko03050,ko05169,map03050,map05169 |
KEGG Module | M00341 |
Evalue | 5.96e-108 |
EggNOG OGs | COG0554@1|root,KOG0728@2759|Eukaryota,37R03@33090|Viridiplantae,34J14@3041|Chlorophyta |
Description | Belongs to the AAA ATPase family |
COG category | O |
BRITE | ko00000,ko00001,ko00002,ko03051 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gchil10007.t1 ID=Gchil10007.t1|Name=Gchil10007.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=234bp MAAADAMKIGIPATMASGLSIGLRSYYQTKMDQLESKIRDKQENLRRLQA QRNELNSRVRDLREELLLLQEPGGYVGEVVKIMGRKKVLVKVHPEGKYIV DIDSSIDITKLSSTARVALRNDSYTLYKVLPSKVDPLVSLMRVENVPDST YEMIGGLDEQLKAIREVIELPVLHPELFDALGIAQPKGVLLYGPPGTGKT LLARAVAHHTKCTFIRVSGSELVQKYIGEGSRM* back to topspliced messenger RNA >Gchil10007.t1 ID=Gchil10007.t1|Name=Gchil10007.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=702bp|location=Sequence derived from alignment at tig00004442_pilon:232025..232818+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGCGGCCGCAGATGCGATGAAAATCGGAATCCCTGCCACCATGGCTTC CGGATTGAGCATAGGGTTGAGGTCTTATTATCAAACCAAAATGGATCAGC TTGAAAGCAAAATCCGTGACAAGCAGGAGAACCTACGTCGTCTTCAAGCA CAGCGCAATGAACTGAATTCTAGAGTTCGAGATCTACGTGAGGAGCTTCT CTTGTTGCAAGAACCCGGTGGATACGTTGGAGAGGTCGTCAAGATAATGG GCAGAAAAAAGGTCCTTGTTAAAGTCCATCCTGAAGGGAAATACATCGTT GATATCGATAGCTCCATAGATATTACAAAACTCTCATCAACAGCTCGCGT TGCTCTGAGGAACGATTCATATACACTTTACAAAGTCCTACCGAGCAAAG TCGACCCGTTGGTTTCGCTGATGAGAGTGGAAAATGTGCCTGATTCCACG TATGAAATGATTGGGGGTTTGGATGAACAGCTTAAAGCCATTCGTGAAGT GATTGAACTTCCGGTGTTGCATCCGGAGCTGTTTGATGCCCTTGGTATTG CCCAGCCGAAGGGTGTGCTCTTGTATGGCCCCCCTGGAACAGGAAAGACA CTTTTGGCTCGCGCTGTTGCTCATCACACGAAGTGCACATTCATTCGCGT CTCGGGTTCGGAACTCGTACAGAAATACATCGGAGAAGGCAGTCGAATGt ag back to topprotein sequence of Gchil10007.t1 >Gchil10007.t1 ID=Gchil10007.t1|Name=Gchil10007.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=234bp
MAAADAMKIGIPATMASGLSIGLRSYYQTKMDQLESKIRDKQENLRRLQA QRNELNSRVRDLREELLLLQEPGGYVGEVVKIMGRKKVLVKVHPEGKYIV DIDSSIDITKLSSTARVALRNDSYTLYKVLPSKVDPLVSLMRVENVPDST YEMIGGLDEQLKAIREVIELPVLHPELFDALGIAQPKGVLLYGPPGTGKT LLARAVAHHTKCTFIRVSGSELVQKYIGEGSRM* back to topmRNA from alignment at tig00004442_pilon:232025..232818+ Legend: polypeptidestart_codonCDSexonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gchil10007.t1 ID=Gchil10007.t1|Name=Gchil10007.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=794bp|location=Sequence derived from alignment at tig00004442_pilon:232025..232818+ (Gracilaria chilensis NLEC103_M9 male) ATGGCGGCCGCAGATGCGATGAAAATCGGAATCCCTGCCACCATGGCTTC
CGGATTGAGCATAGGGTTGAGGTCTTATTATCAAACCAAAATGGATCAGC
TTGAAAGCAAAATCCGTGACAAGCAGGAGAACCTACGTCGTCTTCAAGCA
CAGCGCAATGAACTGAATTCTAGAGTTCGAGATCTACGTGAGGAGCTTCT
CTTGTTGCAAGAACCCGGTGGATACGTTGGAGAGGTCGTCAAGATAATGG
GCAGAAAAAAGGTCCTTGTTAAAGTCCATCCTGAAGGGAAATACATCGTT
GATATCGATAGCTCCATAGATATTACAAAACTCTCATCAACAGCTCGCGT
TGCTCTGAGGAACGATTCATATACACTTTACAAAGTCCTACCGAGCAAAG
TCGACCCGTTGGTTTCGCTGATGAGAGTGGAAAATGTGCCTGATTCCACG
TATGAAATGATTGGGGGTTTGGATGAACAGCTTAAAGCCATTCGTGAAGT
GATTGAACTTCCGGTGTTGCATCCGGAGCTGTTTGATGCCCTTGGTATTG
CCCAGCCGAAGGGTGTGCTCTTGTATGGCCCCCCTGGAACAGGAAAGACA
CTTTTGGCTCGCGCTGTTGCTCATCACACGAAGTGCACATTCATTCGCGT
CTCGGGTTCGGAACTCGTACAGAAATACATCGGAGAAGGCAGTCGAATGG
TTCGTGAGCTTTTCGTAATGGCACGcgaacacgcaccatcaatcatattc
atggatgaaattgattccattggctctactcgaatgaacagtag back to topCoding sequence (CDS) from alignment at tig00004442_pilon:232025..232818+ >Gchil10007.t1 ID=Gchil10007.t1|Name=Gchil10007.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=702bp|location=Sequence derived from alignment at tig00004442_pilon:232025..232818+ (Gracilaria chilensis NLEC103_M9 male) ATGGCGGCCGCAGATGCGATGAAAATCGGAATCCCTGCCACCATGGCTTC CGGATTGAGCATAGGGTTGAGGTCTTATTATCAAACCAAAATGGATCAGC TTGAAAGCAAAATCCGTGACAAGCAGGAGAACCTACGTCGTCTTCAAGCA CAGCGCAATGAACTGAATTCTAGAGTTCGAGATCTACGTGAGGAGCTTCT CTTGTTGCAAGAACCCGGTGGATACGTTGGAGAGGTCGTCAAGATAATGG GCAGAAAAAAGGTCCTTGTTAAAGTCCATCCTGAAGGGAAATACATCGTT GATATCGATAGCTCCATAGATATTACAAAACTCTCATCAACAGCTCGCGT TGCTCTGAGGAACGATTCATATACACTTTACAAAGTCCTACCGAGCAAAG TCGACCCGTTGGTTTCGCTGATGAGAGTGGAAAATGTGCCTGATTCCACG TATGAAATGATTGGGGGTTTGGATGAACAGCTTAAAGCCATTCGTGAAGT GATTGAACTTCCGGTGTTGCATCCGGAGCTGTTTGATGCCCTTGGTATTG CCCAGCCGAAGGGTGTGCTCTTGTATGGCCCCCCTGGAACAGGAAAGACA CTTTTGGCTCGCGCTGTTGCTCATCACACGAAGTGCACATTCATTCGCGT CTCGGGTTCGGAACTCGTACAGAAATACATCGGAGAAGGCAGTCGAATGt ag back to top
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