Gchil7390.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7390.t1
Unique NameGchil7390.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length468
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:837395..838798 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45351.EDO43011
Preferred nameDDX49
PFAMsDEAD,Helicase_C
Max annot lvl33208|Metazoa
KEGG koko:K14778
GOsGO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009987,GO:0010467,GO:0010501,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022613,GO:0031974,GO:0031981,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0070035,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:1901360
Evalue5.86e-113
EggNOG OGsCOG0513@1|root,KOG0340@2759|Eukaryota,38C0R@33154|Opisthokonta,3BE6I@33208|Metazoa
EC3.6.4.13
Descriptionhelicase activity
COG categoryA
BRITEko00000,ko01000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7390Gchil7390Gracilaria chilensis NLEC103_M9 malegenetig00000007_pilon 837395..838798 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7390.t1.start1Gchil7390.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000007_pilon 837395..837397 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7390.t1.CDS1Gchil7390.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 837395..838798 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7390.t1.exon1Gchil7390.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 837395..838798 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7390.t1.stop1Gchil7390.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000007_pilon 838796..838798 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7390.t1Gchil7390.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000007_pilon 837395..838798 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7390.t1 ID=Gchil7390.t1|Name=Gchil7390.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=468bp
MPTFVALGLKPWLQRACSTVGIHAPTAVQAACIPPILRGRNVIAAAHTGT
GKTAAFVLPILHRLAHDPRAFFALVLTPTRELAFQIAQQIAALGARIAVK
HLVLVGGVHHLQQTAALAALPHIVVATPGRLAFMLARNHIALNKLRFLVL
DEADRLLHPTYHHDLALVLNACSAPDRQTLMFSATITSSLQQLQRVAAQN
AHHTFRYDARPNRFATVDALTQRYIFLPHHLKECHLVTLLKDQFPSSSVI
IFVARCETAHLLLTMLNLLGMTKVAALHSHMSQHRRIESLQRFKGNLVRA
LVATDVASRGLDVPACELVVNYDLPSSVATYVHRVGRTARAGRSGLALSF
VAQSDLHLVKAIEHRIQRKLHLHTGCSEKLVMDNLASTLKARQMANLRLH
DTGFFENAEARRAPARKAAAKRRKRRSETQPALKKQRVRQQQQQQPPDAP
AEPHPLQQPQPQQQQQQ*
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spliced messenger RNA

>Gchil7390.t1 ID=Gchil7390.t1|Name=Gchil7390.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1404bp|location=Sequence derived from alignment at tig00000007_pilon:837395..838798+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCACGTTCGTCGCGCTCGGGCTCAAGCCCTGGCTGCAGCGCGCCTG
CTCCACCGTCGGCATCCACGCCCCCACCGCCGTGCAGGCCGCGTGCATCC
CGCCCATCCTGCGCGGCCGCAACGTCATCGCCGCCGCCCACACCGGCACC
GGCAAGACCGCCGCCTTCGTGCTGCCCATCCTGCACCGCCTCGCCCACGA
CCCGCGCGCCTTCTTCGCCCTCGTCCTCACCCCCACCCGCGAGCTCGCCT
TCCAGATCGCCCAACAGATCGCCGCCCTCGGCGCCCGCATCGCCGTCAAG
CACCTCGTGCTCGTCGGCGGCGTCCACCACCTCCAGCAGACCGCCGCCCT
GGCCGCCCTCCCGCACATCGTCGTCGCCACCCCCGGCCGCCTCGCCTTCA
TGCTCGCCAGGAACCATATTGCCCTCAACAAGCTGCGCTTCCTCGTGCTG
GACGAGGCCGATCGCCTATTGCACCCCACCTATCACCACGATCTTGCGCT
TGTTCTCAACGCCTGCTCTGCCCCCGACCGCCAGACCCTCATGTTTTCCG
CCACTATCACCTCCTCACTGCAGCAGCTGCAACGCGTCGCCGCCCAGAAC
GCCCACCACACCTTTCGCTACGACGCGCGTCCCAACCGCTTCGCCACCGT
CGACGCCCTCACCCAGCGCTACATCTTTCTCCCACACCACCTCAAGGAGT
GTCACCTCGTCACCCTGCTCAAGGACCAGTTCCCGTCCTCCAGCGTAATC
ATCTTTGTGGCGCGCTGCGAAACCGCCCACCTCCTGCTCACCATGCTCAA
TCTGCTGGGCATGACCAAAGTCGCCGCGCTGCACTCGCACATGAGCCAGC
ACCGTCGCATCGAGTCGTTGCAGCGTTTCAAGGGCAACCTCGTGCGCGCC
CTCGTCGCCACCGATGTCGCCAGCAGAGGGCTCGACGTCCCTGCCTGCGA
GCTCGTCGTCAACTACGACCTGCCCTCAAGCGTCGCCACCTACGTCCATC
GCGTGGGCCGCACCGCCCGCGCAGGCAGATCGGGCTTGGCGCTCAGCTTT
GTCGCCCAAAGCGACCTTCATCTCGTCAAGGCTATCGAACATCGCATTCA
GCGTAAGCTGCACTTGCACACGGGCTGCTCGGAAAAACTTGTCATGGACA
ACCTCGCAAGCACCCTCAAGGCCCGCCAAATGGCCAACTTGCGCTTGCAC
GACACCGGCTTCTTTGAAAACGCCGAGGCGCGCCGCGCTCCAGCCAGAAA
GGCAGCGGCAAAGCGTCGAAAGCGCCGCAGTGAAACACAACCCGCTCTCA
AGAAGCAGCGCGTTCGacaacaacaacaacaacagccgcccgacgcaccg
gccgagcctcatccactacaacaaccgcagccacagcaacagcaacagca
atag
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protein sequence of Gchil7390.t1

>Gchil7390.t1 ID=Gchil7390.t1|Name=Gchil7390.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=468bp
MPTFVALGLKPWLQRACSTVGIHAPTAVQAACIPPILRGRNVIAAAHTGT
GKTAAFVLPILHRLAHDPRAFFALVLTPTRELAFQIAQQIAALGARIAVK
HLVLVGGVHHLQQTAALAALPHIVVATPGRLAFMLARNHIALNKLRFLVL
DEADRLLHPTYHHDLALVLNACSAPDRQTLMFSATITSSLQQLQRVAAQN
AHHTFRYDARPNRFATVDALTQRYIFLPHHLKECHLVTLLKDQFPSSSVI
IFVARCETAHLLLTMLNLLGMTKVAALHSHMSQHRRIESLQRFKGNLVRA
LVATDVASRGLDVPACELVVNYDLPSSVATYVHRVGRTARAGRSGLALSF
VAQSDLHLVKAIEHRIQRKLHLHTGCSEKLVMDNLASTLKARQMANLRLH
DTGFFENAEARRAPARKAAAKRRKRRSETQPALKKQRVRQQQQQQPPDAP
AEPHPLQQPQPQQQQQQ*
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mRNA from alignment at tig00000007_pilon:837395..838798+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7390.t1 ID=Gchil7390.t1|Name=Gchil7390.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1404bp|location=Sequence derived from alignment at tig00000007_pilon:837395..838798+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCCACGTTCGTCGCGCTCGGGCTCAAGCCCTGGCTGCAGCGCGCCTG
CTCCACCGTCGGCATCCACGCCCCCACCGCCGTGCAGGCCGCGTGCATCC
CGCCCATCCTGCGCGGCCGCAACGTCATCGCCGCCGCCCACACCGGCACC
GGCAAGACCGCCGCCTTCGTGCTGCCCATCCTGCACCGCCTCGCCCACGA
CCCGCGCGCCTTCTTCGCCCTCGTCCTCACCCCCACCCGCGAGCTCGCCT
TCCAGATCGCCCAACAGATCGCCGCCCTCGGCGCCCGCATCGCCGTCAAG
CACCTCGTGCTCGTCGGCGGCGTCCACCACCTCCAGCAGACCGCCGCCCT
GGCCGCCCTCCCGCACATCGTCGTCGCCACCCCCGGCCGCCTCGCCTTCA
TGCTCGCCAGGAACCATATTGCCCTCAACAAGCTGCGCTTCCTCGTGCTG
GACGAGGCCGATCGCCTATTGCACCCCACCTATCACCACGATCTTGCGCT
TGTTCTCAACGCCTGCTCTGCCCCCGACCGCCAGACCCTCATGTTTTCCG
CCACTATCACCTCCTCACTGCAGCAGCTGCAACGCGTCGCCGCCCAGAAC
GCCCACCACACCTTTCGCTACGACGCGCGTCCCAACCGCTTCGCCACCGT
CGACGCCCTCACCCAGCGCTACATCTTTCTCCCACACCACCTCAAGGAGT
GTCACCTCGTCACCCTGCTCAAGGACCAGTTCCCGTCCTCCAGCGTAATC
ATCTTTGTGGCGCGCTGCGAAACCGCCCACCTCCTGCTCACCATGCTCAA
TCTGCTGGGCATGACCAAAGTCGCCGCGCTGCACTCGCACATGAGCCAGC
ACCGTCGCATCGAGTCGTTGCAGCGTTTCAAGGGCAACCTCGTGCGCGCC
CTCGTCGCCACCGATGTCGCCAGCAGAGGGCTCGACGTCCCTGCCTGCGA
GCTCGTCGTCAACTACGACCTGCCCTCAAGCGTCGCCACCTACGTCCATC
GCGTGGGCCGCACCGCCCGCGCAGGCAGATCGGGCTTGGCGCTCAGCTTT
GTCGCCCAAAGCGACCTTCATCTCGTCAAGGCTATCGAACATCGCATTCA
GCGTAAGCTGCACTTGCACACGGGCTGCTCGGAAAAACTTGTCATGGACA
ACCTCGCAAGCACCCTCAAGGCCCGCCAAATGGCCAACTTGCGCTTGCAC
GACACCGGCTTCTTTGAAAACGCCGAGGCGCGCCGCGCTCCAGCCAGAAA
GGCAGCGGCAAAGCGTCGAAAGCGCCGCAGTGAAACACAACCCGCTCTCA
AGAAGCAGCGCGTTCGacaacaacaacaacaacagccgcccgacgcaccg
gccgagcctcatccactacaacaaccgcagccacagcaacagcaacagca
atag
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Coding sequence (CDS) from alignment at tig00000007_pilon:837395..838798+

>Gchil7390.t1 ID=Gchil7390.t1|Name=Gchil7390.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1404bp|location=Sequence derived from alignment at tig00000007_pilon:837395..838798+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCCACGTTCGTCGCGCTCGGGCTCAAGCCCTGGCTGCAGCGCGCCTG
CTCCACCGTCGGCATCCACGCCCCCACCGCCGTGCAGGCCGCGTGCATCC
CGCCCATCCTGCGCGGCCGCAACGTCATCGCCGCCGCCCACACCGGCACC
GGCAAGACCGCCGCCTTCGTGCTGCCCATCCTGCACCGCCTCGCCCACGA
CCCGCGCGCCTTCTTCGCCCTCGTCCTCACCCCCACCCGCGAGCTCGCCT
TCCAGATCGCCCAACAGATCGCCGCCCTCGGCGCCCGCATCGCCGTCAAG
CACCTCGTGCTCGTCGGCGGCGTCCACCACCTCCAGCAGACCGCCGCCCT
GGCCGCCCTCCCGCACATCGTCGTCGCCACCCCCGGCCGCCTCGCCTTCA
TGCTCGCCAGGAACCATATTGCCCTCAACAAGCTGCGCTTCCTCGTGCTG
GACGAGGCCGATCGCCTATTGCACCCCACCTATCACCACGATCTTGCGCT
TGTTCTCAACGCCTGCTCTGCCCCCGACCGCCAGACCCTCATGTTTTCCG
CCACTATCACCTCCTCACTGCAGCAGCTGCAACGCGTCGCCGCCCAGAAC
GCCCACCACACCTTTCGCTACGACGCGCGTCCCAACCGCTTCGCCACCGT
CGACGCCCTCACCCAGCGCTACATCTTTCTCCCACACCACCTCAAGGAGT
GTCACCTCGTCACCCTGCTCAAGGACCAGTTCCCGTCCTCCAGCGTAATC
ATCTTTGTGGCGCGCTGCGAAACCGCCCACCTCCTGCTCACCATGCTCAA
TCTGCTGGGCATGACCAAAGTCGCCGCGCTGCACTCGCACATGAGCCAGC
ACCGTCGCATCGAGTCGTTGCAGCGTTTCAAGGGCAACCTCGTGCGCGCC
CTCGTCGCCACCGATGTCGCCAGCAGAGGGCTCGACGTCCCTGCCTGCGA
GCTCGTCGTCAACTACGACCTGCCCTCAAGCGTCGCCACCTACGTCCATC
GCGTGGGCCGCACCGCCCGCGCAGGCAGATCGGGCTTGGCGCTCAGCTTT
GTCGCCCAAAGCGACCTTCATCTCGTCAAGGCTATCGAACATCGCATTCA
GCGTAAGCTGCACTTGCACACGGGCTGCTCGGAAAAACTTGTCATGGACA
ACCTCGCAAGCACCCTCAAGGCCCGCCAAATGGCCAACTTGCGCTTGCAC
GACACCGGCTTCTTTGAAAACGCCGAGGCGCGCCGCGCTCCAGCCAGAAA
GGCAGCGGCAAAGCGTCGAAAGCGCCGCAGTGAAACACAACCCGCTCTCA
AGAAGCAGCGCGTTCGacaacaacaacaacaacagccgcccgacgcaccg
gccgagcctcatccactacaacaaccgcagccacagcaacagcaacagca
atag
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