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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Seed ortholog | 67593.Physo144493 |
PFAMs | RVT_1,RVT_3 |
Max annot lvl | 2759|Eukaryota |
Evalue | 2.89e-08 |
EggNOG OGs | COG2801@1|root,2RZ6W@2759|Eukaryota,3QJ6I@4776|Peronosporales |
Description | Reverse transcriptase-like |
COG category | L |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gchil10022.t1 ID=Gchil10022.t1|Name=Gchil10022.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=406bp MATQILTLEETNVMPVTREKILREQAQDAYCRTLADQIGFKGSPFDVDHN GYIVRRSTFYGSLQKVVPKALRPRVLYLAHYPRLSGHPGATRMYYTLTQQ FYWPHMAHDVYTFVAHSSDHRRVVEAHEGDTCKGDDVNNADDRFLQQLGL PVWCTTTNGQVERLNHTLVSRLRHYTEEHQTGWDKLVQPLTYSYKHQVHR STQATPFDLVLLRHPPGIVVQGDHTTSTAAGALTPAQVKRNTLVMLRRAL KHAESRLTAAQKRYKADYDRRVTNVVSVSSGQYVYIDNPPSGRRPRPGDE ADDEAIDSDINSKLLPKSVGPHKVLNASDPTVTVDQDGIPNTISIDRITV APETVQHRMEAGTSAREPRALALRTRPSEDPTPIEVNDDRQRDDPDYNPL TGAEI* back to topspliced messenger RNA >Gchil10022.t1 ID=Gchil10022.t1|Name=Gchil10022.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1218bp|location=Sequence derived from alignment at tig00004442_pilon:421537..423003+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.
atggccacgcagatactgaccctagaggaaacgaatgtcatgcccgtaac ccgagagaaaattctacgagaacaggcccaggatgcgtactgcagaaccc tggctgaccaaattggtttcaaaggatcaccattcgatgtggaccacaat ggctacatcgtgagaaggtcaaccttctatggtagccttcaaaaggtggt tccgaaggcactgcggccgagagtcttgtatcttgcgcactacccgcgac tatcgggacaccccggtgccaccaggatgtattacaccttgacgcaacag ttctattggcctcatatggcccatgatgtctatacctttgtagcacattc tagtgatcaccgacgggttgtcgaagctcacgagggtgatacctgtaaag gagacgacgtcaacaacgctgacgatcgctttcttcaacaattgggtcta cccgtatggtgcaccactacaaacggacaggtcgagcgccttaaccacac attggtatcaaggctacgacactatacggaagagcaccaaactgggtggg ataagctggtgcaaccgctcacctactcctataaacatcaggtacaccgg tcaactcaggcaactccctttgatttggttcttttgcgacaccccccagg tattgtagtgcagggagatcatactaccagcactgcagctggcgcactga cccctgcccaagtcaagcgaaatacccttgtgatgttgaggagggctctc aaacatgcagagagccgcctcaccgcagcccagaagcggtacaaggccga ctacgaccgtagggtaaccaatgtggtctccgtatcttcgggacaatatg tctatatagacaacccaccttcaggtagaagaccacgaccgggtgatgaa gcggacgatgaagctattgatagcgatatcaattcgaagcttctacccaa atcagtgggacctcataaggtattgaacgcatctgaccccaccgttacgg ttgaccaagatggaataccgaatacgatatcaattgaccgtattacggta gcacctgaaacggttcaacatcgcatggaggcaggcacctcagcccgaga acccagagctctagctctgcgcactcgaccctcggaggaccccaccccaa ttgaggtaaacgatgaccgtcaacgtgatgatccggattacaaccctcta acaggggcggaaatttaa back to topprotein sequence of Gchil10022.t1 >Gchil10022.t1 ID=Gchil10022.t1|Name=Gchil10022.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=406bp
MATQILTLEETNVMPVTREKILREQAQDAYCRTLADQIGFKGSPFDVDHN GYIVRRSTFYGSLQKVVPKALRPRVLYLAHYPRLSGHPGATRMYYTLTQQ FYWPHMAHDVYTFVAHSSDHRRVVEAHEGDTCKGDDVNNADDRFLQQLGL PVWCTTTNGQVERLNHTLVSRLRHYTEEHQTGWDKLVQPLTYSYKHQVHR STQATPFDLVLLRHPPGIVVQGDHTTSTAAGALTPAQVKRNTLVMLRRAL KHAESRLTAAQKRYKADYDRRVTNVVSVSSGQYVYIDNPPSGRRPRPGDE ADDEAIDSDINSKLLPKSVGPHKVLNASDPTVTVDQDGIPNTISIDRITV APETVQHRMEAGTSAREPRALALRTRPSEDPTPIEVNDDRQRDDPDYNPL TGAEI* back to topmRNA from alignment at tig00004442_pilon:421537..423003+ Legend: polypeptidestart_codonCDSexonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gchil10022.t1 ID=Gchil10022.t1|Name=Gchil10022.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1467bp|location=Sequence derived from alignment at tig00004442_pilon:421537..423003+ (Gracilaria chilensis NLEC103_M9 male) atggccacgcagatactgaccctagaggaaacgaatgtcatgcccgtaac
ccgagagaaaattctacgagaacaggcccaggatgcgtactgcagaaccc
tggctgaccaaattggtttcaaaggatcaccattcgatgtggaccacaat
ggctacatcgtgagaaggtcaaccttctatggtagccttcaaaaggtggt
tccgaaggcactgcggccgagagtcttgtatcttgcgcactacccgcgac
tatcgggacaccccggtgccaccaggatgtattacaccttgacgcaacag
ttctattggcctcatatggcccatgatgtctatacctttgtaggtcaatg
ctaatcttgtgttcgtacccgcggtggtattcgaaagcatcgaaagtatc
tcaagctgtttccagcagcgggtccactggagtttgttgcgatagacctt
ctaggaccacttcccaaaaccaataatgggtatcagcacattctagtgat
caccgacgggttgtcgaagctcacgagggtgatacctgtaaaggagacga
cgtcaacaacgctgacgatcgctttcttcaacaattgggtctacccgtat
ggtgcaccactgtacctacttaccgataatggttaaaacctgtaatcgaa
gttcttcgaagcagtctgtaacctcttgggtatcaagcactatttcacta
ctgcctaccacccgcagacaaacggacaggtcgagcgccttaaccacaca
ttggtatcaaggctacgacactatacggaagagcaccaaactgggtggga
taagctggtgcaaccgctcacctactcctataaacatcaggtacaccggt
caactcaggcaactccctttgatttggttcttttgcgacaccccccaggt
attgtagtgcagggagatcatactaccagcactgcagctggcgcactgac
ccctgcccaagtcaagcgaaatacccttgtgatgttgaggagggctctca
aacatgcagagagccgcctcaccgcagcccagaagcggtacaaggccgac
tacgaccgtagggtaaccaatgtggtctccgtatcttcgggacaatatgt
ctatatagacaacccaccttcaggtagaagaccacgaccgggtgatgaag
cggacgatgaagctattgatagcgatatcaattcgaagcttctacccaaa
tcagtgggacctcataaggtattgaacgcatctgaccccaccgttacggt
tgaccaagatggaataccgaatacgatatcaattgaccgtattacggtag
cacctgaaacggttcaacatcgcatggaggcaggcacctcagcccgagaa
cccagagctctagctctgcgcactcgaccctcggaggaccccaccccaat
tgaggtaaacgatgaccgtcaacgtgatgatccggattacaaccctctaa
caggggcggaaatttaa back to topCoding sequence (CDS) from alignment at tig00004442_pilon:421537..423003+ >Gchil10022.t1 ID=Gchil10022.t1|Name=Gchil10022.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1218bp|location=Sequence derived from alignment at tig00004442_pilon:421537..423003+ (Gracilaria chilensis NLEC103_M9 male) atggccacgcagatactgaccctagaggaaacgaatgtcatgcccgtaac ccgagagaaaattctacgagaacaggcccaggatgcgtactgcagaaccc tggctgaccaaattggtttcaaaggatcaccattcgatgtggaccacaat ggctacatcgtgagaaggtcaaccttctatggtagccttcaaaaggtggt tccgaaggcactgcggccgagagtcttgtatcttgcgcactacccgcgac tatcgggacaccccggtgccaccaggatgtattacaccttgacgcaacag ttctattggcctcatatggcccatgatgtctatacctttgtagcacattc tagtgatcaccgacgggttgtcgaagctcacgagggtgatacctgtaaag gagacgacgtcaacaacgctgacgatcgctttcttcaacaattgggtcta cccgtatggtgcaccactacaaacggacaggtcgagcgccttaaccacac attggtatcaaggctacgacactatacggaagagcaccaaactgggtggg ataagctggtgcaaccgctcacctactcctataaacatcaggtacaccgg tcaactcaggcaactccctttgatttggttcttttgcgacaccccccagg tattgtagtgcagggagatcatactaccagcactgcagctggcgcactga cccctgcccaagtcaagcgaaatacccttgtgatgttgaggagggctctc aaacatgcagagagccgcctcaccgcagcccagaagcggtacaaggccga ctacgaccgtagggtaaccaatgtggtctccgtatcttcgggacaatatg tctatatagacaacccaccttcaggtagaagaccacgaccgggtgatgaa gcggacgatgaagctattgatagcgatatcaattcgaagcttctacccaa atcagtgggacctcataaggtattgaacgcatctgaccccaccgttacgg ttgaccaagatggaataccgaatacgatatcaattgaccgtattacggta gcacctgaaacggttcaacatcgcatggaggcaggcacctcagcccgaga acccagagctctagctctgcgcactcgaccctcggaggaccccaccccaa ttgaggtaaacgatgaccgtcaacgtgatgatccggattacaaccctcta acaggggcggaaatttaa back to top
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