Gchil846.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil846.t1
Unique NameGchil846.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length535
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000017_piloncontigtig00000017_pilon:369516..371120 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705580.1
PFAMsMFS_1
Max annot lvl2759|Eukaryota
KEGG koko:K15378
KEGG TC2.A.2.4,2.A.2.6
Evalue2.45e-98
EggNOG OGsKOG0637@1|root,KOG0637@2759|Eukaryota
Descriptionsucrose transmembrane transporter activity
COG categoryS
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil846Gchil846Gracilaria chilensis NLEC103_M9 malegenetig00000017_pilon 369516..371120 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil846.t1.stop1Gchil846.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000017_pilon 369516..369518 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil846.t1.CDS1Gchil846.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000017_pilon 369516..371120 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil846.t1.exon1Gchil846.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000017_pilon 369516..371120 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil846.t1.start1Gchil846.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000017_pilon 371118..371120 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil846.t1Gchil846.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000017_pilon 369516..371120 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil846.t1 ID=Gchil846.t1|Name=Gchil846.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=535bp
MSSRQHRQLISLVKSLTDGRNIASTLPTSPQTASPPELVPHKRMSPLQTA
VTPPVPPPMLCTLAMAGIQLCYAAQINLGTAHLVHLGLRHSHASLAWLAG
PLSGLLFQPLIGALSDNCTHPLGRRRPFLIVGCLFTCLSLFAFSNAQQIA
HMLQAEHSALSVAIAAFFTLDFSIQAIQAPLRALVIDVMPAAKLSAANSC
IALHCGIGNLIGGCLVAVPWSTWLPHVSNIQMVFAISSLLLVMSTALTVV
STPEQMLIRDTSVPRSSSSGRLSQPPSLSSRSSSVSSRLFKTLAAIPSPF
WGVFGVQLCTWCGFFALFVYVNTWVGHNVFMGDGSKPISDTRRQLFDAGV
RLGGTANAMTAAVTIAYSCILPRMVRAYGVTSMYLVSQCVEAITLMGAMF
IRARSSPPSVLLQLVAVLNVGAFGVVWATTMSLPWTLIVRALECDSYYAA
KKGLFTTVFNASQSLPQLVVAVVAPLILAARDDAADVMFVGGMVAVVGAV
LVVWLRIEERVSKTASRHADGVAPSVSMSSMRVS*
back to top

spliced messenger RNA

>Gchil846.t1 ID=Gchil846.t1|Name=Gchil846.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1605bp|location=Sequence derived from alignment at tig00000017_pilon:369516..371120- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCTCCCGGCAGCACCGTCAACTCATCTCCTTGGTAAAATCGCTCAC
CGACGGTCGCAACATCGCTTCTACATTACCCACCTCGCCACAAACTGCAT
CACCTCCAGAACTTGTGCCACACAAGCGCATGTCGCCACTGCAAACCGCC
GTCACTCCGCCCGTACCACCTCCTATGCTTTGCACGCTTGCAATGGCCGG
CATTCAACTGTGCTATGCTGCGCAAATAAACCTCGGCACCGCACATCTTG
TGCATTTGGGGCTTCGCCATTCACACGCCTCGCTCGCCTGGTTGGCTGGT
CCACTCTCCGGGTTACTGTTTCAACCGCTTATCGGTGCGCTTTCTGACAA
TTGTACGCACCCACTCGGGCGCCGACGTCCTTTTCTCATTGTCGGTTGTC
TGTTTACCTGCTTGTCATTGTTTGCTTTTTCAAATGCACAACAGATAGCA
CACATGCTTCAGGCCGAACATTCTGCTCTTTCGGTAGCTATTGCGGCGTT
TTTCACGTTGGATTTCTCGATACAGGCTATTCAGGCTCCGTTGCGGGCGC
TTGTAATTGACGTGATGCCGGCTGCGAAGCTTTCGGCAGCCAATTCTTGT
ATTGCATTGCATTGCGGCATTGGAAATCTTATCGGTGGTTGCCTTGTAGC
TGTTCCGTGGTCCACATGGCTTCCGCACGTGTCCAATATTCAGATGGTGT
TTGCAATCTCCTCGTTGTTACTTGTGATGAGCACTGCTCTAACCGTGGTG
AGCACACCAGAACAAATGCTGATCAGAGACACGAGCGTTCCAAGATCGTC
GTCTAGTGGGCGTCTTTCACAACCACCCTCGCTGTCGTCGCGGTCTTCAA
GCGTTTCTTCGCGGTTATTTAAAACACTGGCCGCCATCCCCAGTCCATTT
TGGGGCGTATTTGGCGTTCAGCTATGCACATGGTGTGGATTCTTCGCCTT
GTTCGTGTACGTTAATACATGGGTGGGACATAATGTATTTATGGGGGACG
GCTCAAAACCCATATCCGATACAAGGCGGCAATTGTTTGATGCGGGCGTT
CGACTGGGCGGCACTGCGAATGCAATGACAGCAGCGGTGACGATTGCATA
CTCTTGCATACTACCGCGAATGGTGCGAGCTTACGGTGTGACAAGCATGT
ATCTGGTGTCACAATGCGTGGAAGCAATCACGTTGATGGGCGCAATGTTC
ATTCGTGCGCGATCGTCACCGCCTTCAGTGCTGCTGCAGTTGGTAGCAGT
GTTGAATGTGGGCGCGTTTGGGGTGGTGTGGGCAACCACAATGAGCTTAC
CGTGGACGCTGATCGTGCGTGCACTTGAGTGTGACTCATACTACGCGGCG
AAGAAGGGTCTATTCACAACGGTTTTCAACGCGAGCCAAAGCCTACCGCA
GCTGGTGGTCGCAGTGGTTGCGCCATTGATTCTGGCGGCGCGGGATGACG
CGGCTGATGTGATGTTTGTGGGGGGGATGGTGGCTGTCGTGGGCGCGGTG
CTGGTGGTGTGGCTGAGGATTGAGGAGAGGGTGTCGAAGACGGCGTCGCG
TCATGCGGACGGCGTGGCGCCGAGTGTGAGCATGTCGTCCATGCGCGTGT
CGTGA
back to top

protein sequence of Gchil846.t1

>Gchil846.t1 ID=Gchil846.t1|Name=Gchil846.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=535bp
MSSRQHRQLISLVKSLTDGRNIASTLPTSPQTASPPELVPHKRMSPLQTA
VTPPVPPPMLCTLAMAGIQLCYAAQINLGTAHLVHLGLRHSHASLAWLAG
PLSGLLFQPLIGALSDNCTHPLGRRRPFLIVGCLFTCLSLFAFSNAQQIA
HMLQAEHSALSVAIAAFFTLDFSIQAIQAPLRALVIDVMPAAKLSAANSC
IALHCGIGNLIGGCLVAVPWSTWLPHVSNIQMVFAISSLLLVMSTALTVV
STPEQMLIRDTSVPRSSSSGRLSQPPSLSSRSSSVSSRLFKTLAAIPSPF
WGVFGVQLCTWCGFFALFVYVNTWVGHNVFMGDGSKPISDTRRQLFDAGV
RLGGTANAMTAAVTIAYSCILPRMVRAYGVTSMYLVSQCVEAITLMGAMF
IRARSSPPSVLLQLVAVLNVGAFGVVWATTMSLPWTLIVRALECDSYYAA
KKGLFTTVFNASQSLPQLVVAVVAPLILAARDDAADVMFVGGMVAVVGAV
LVVWLRIEERVSKTASRHADGVAPSVSMSSMRVS*
back to top

mRNA from alignment at tig00000017_pilon:369516..371120-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil846.t1 ID=Gchil846.t1|Name=Gchil846.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1605bp|location=Sequence derived from alignment at tig00000017_pilon:369516..371120- (Gracilaria chilensis NLEC103_M9 male)
ATGAGCTCCCGGCAGCACCGTCAACTCATCTCCTTGGTAAAATCGCTCAC
CGACGGTCGCAACATCGCTTCTACATTACCCACCTCGCCACAAACTGCAT
CACCTCCAGAACTTGTGCCACACAAGCGCATGTCGCCACTGCAAACCGCC
GTCACTCCGCCCGTACCACCTCCTATGCTTTGCACGCTTGCAATGGCCGG
CATTCAACTGTGCTATGCTGCGCAAATAAACCTCGGCACCGCACATCTTG
TGCATTTGGGGCTTCGCCATTCACACGCCTCGCTCGCCTGGTTGGCTGGT
CCACTCTCCGGGTTACTGTTTCAACCGCTTATCGGTGCGCTTTCTGACAA
TTGTACGCACCCACTCGGGCGCCGACGTCCTTTTCTCATTGTCGGTTGTC
TGTTTACCTGCTTGTCATTGTTTGCTTTTTCAAATGCACAACAGATAGCA
CACATGCTTCAGGCCGAACATTCTGCTCTTTCGGTAGCTATTGCGGCGTT
TTTCACGTTGGATTTCTCGATACAGGCTATTCAGGCTCCGTTGCGGGCGC
TTGTAATTGACGTGATGCCGGCTGCGAAGCTTTCGGCAGCCAATTCTTGT
ATTGCATTGCATTGCGGCATTGGAAATCTTATCGGTGGTTGCCTTGTAGC
TGTTCCGTGGTCCACATGGCTTCCGCACGTGTCCAATATTCAGATGGTGT
TTGCAATCTCCTCGTTGTTACTTGTGATGAGCACTGCTCTAACCGTGGTG
AGCACACCAGAACAAATGCTGATCAGAGACACGAGCGTTCCAAGATCGTC
GTCTAGTGGGCGTCTTTCACAACCACCCTCGCTGTCGTCGCGGTCTTCAA
GCGTTTCTTCGCGGTTATTTAAAACACTGGCCGCCATCCCCAGTCCATTT
TGGGGCGTATTTGGCGTTCAGCTATGCACATGGTGTGGATTCTTCGCCTT
GTTCGTGTACGTTAATACATGGGTGGGACATAATGTATTTATGGGGGACG
GCTCAAAACCCATATCCGATACAAGGCGGCAATTGTTTGATGCGGGCGTT
CGACTGGGCGGCACTGCGAATGCAATGACAGCAGCGGTGACGATTGCATA
CTCTTGCATACTACCGCGAATGGTGCGAGCTTACGGTGTGACAAGCATGT
ATCTGGTGTCACAATGCGTGGAAGCAATCACGTTGATGGGCGCAATGTTC
ATTCGTGCGCGATCGTCACCGCCTTCAGTGCTGCTGCAGTTGGTAGCAGT
GTTGAATGTGGGCGCGTTTGGGGTGGTGTGGGCAACCACAATGAGCTTAC
CGTGGACGCTGATCGTGCGTGCACTTGAGTGTGACTCATACTACGCGGCG
AAGAAGGGTCTATTCACAACGGTTTTCAACGCGAGCCAAAGCCTACCGCA
GCTGGTGGTCGCAGTGGTTGCGCCATTGATTCTGGCGGCGCGGGATGACG
CGGCTGATGTGATGTTTGTGGGGGGGATGGTGGCTGTCGTGGGCGCGGTG
CTGGTGGTGTGGCTGAGGATTGAGGAGAGGGTGTCGAAGACGGCGTCGCG
TCATGCGGACGGCGTGGCGCCGAGTGTGAGCATGTCGTCCATGCGCGTGT
CGTGA
back to top

Coding sequence (CDS) from alignment at tig00000017_pilon:369516..371120-

>Gchil846.t1 ID=Gchil846.t1|Name=Gchil846.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1605bp|location=Sequence derived from alignment at tig00000017_pilon:369516..371120- (Gracilaria chilensis NLEC103_M9 male)
ATGAGCTCCCGGCAGCACCGTCAACTCATCTCCTTGGTAAAATCGCTCAC
CGACGGTCGCAACATCGCTTCTACATTACCCACCTCGCCACAAACTGCAT
CACCTCCAGAACTTGTGCCACACAAGCGCATGTCGCCACTGCAAACCGCC
GTCACTCCGCCCGTACCACCTCCTATGCTTTGCACGCTTGCAATGGCCGG
CATTCAACTGTGCTATGCTGCGCAAATAAACCTCGGCACCGCACATCTTG
TGCATTTGGGGCTTCGCCATTCACACGCCTCGCTCGCCTGGTTGGCTGGT
CCACTCTCCGGGTTACTGTTTCAACCGCTTATCGGTGCGCTTTCTGACAA
TTGTACGCACCCACTCGGGCGCCGACGTCCTTTTCTCATTGTCGGTTGTC
TGTTTACCTGCTTGTCATTGTTTGCTTTTTCAAATGCACAACAGATAGCA
CACATGCTTCAGGCCGAACATTCTGCTCTTTCGGTAGCTATTGCGGCGTT
TTTCACGTTGGATTTCTCGATACAGGCTATTCAGGCTCCGTTGCGGGCGC
TTGTAATTGACGTGATGCCGGCTGCGAAGCTTTCGGCAGCCAATTCTTGT
ATTGCATTGCATTGCGGCATTGGAAATCTTATCGGTGGTTGCCTTGTAGC
TGTTCCGTGGTCCACATGGCTTCCGCACGTGTCCAATATTCAGATGGTGT
TTGCAATCTCCTCGTTGTTACTTGTGATGAGCACTGCTCTAACCGTGGTG
AGCACACCAGAACAAATGCTGATCAGAGACACGAGCGTTCCAAGATCGTC
GTCTAGTGGGCGTCTTTCACAACCACCCTCGCTGTCGTCGCGGTCTTCAA
GCGTTTCTTCGCGGTTATTTAAAACACTGGCCGCCATCCCCAGTCCATTT
TGGGGCGTATTTGGCGTTCAGCTATGCACATGGTGTGGATTCTTCGCCTT
GTTCGTGTACGTTAATACATGGGTGGGACATAATGTATTTATGGGGGACG
GCTCAAAACCCATATCCGATACAAGGCGGCAATTGTTTGATGCGGGCGTT
CGACTGGGCGGCACTGCGAATGCAATGACAGCAGCGGTGACGATTGCATA
CTCTTGCATACTACCGCGAATGGTGCGAGCTTACGGTGTGACAAGCATGT
ATCTGGTGTCACAATGCGTGGAAGCAATCACGTTGATGGGCGCAATGTTC
ATTCGTGCGCGATCGTCACCGCCTTCAGTGCTGCTGCAGTTGGTAGCAGT
GTTGAATGTGGGCGCGTTTGGGGTGGTGTGGGCAACCACAATGAGCTTAC
CGTGGACGCTGATCGTGCGTGCACTTGAGTGTGACTCATACTACGCGGCG
AAGAAGGGTCTATTCACAACGGTTTTCAACGCGAGCCAAAGCCTACCGCA
GCTGGTGGTCGCAGTGGTTGCGCCATTGATTCTGGCGGCGCGGGATGACG
CGGCTGATGTGATGTTTGTGGGGGGGATGGTGGCTGTCGTGGGCGCGGTG
CTGGTGGTGTGGCTGAGGATTGAGGAGAGGGTGTCGAAGACGGCGTCGCG
TCATGCGGACGGCGTGGCGCCGAGTGTGAGCATGTCGTCCATGCGCGTGT
CGTGA
back to top