Gchil7256.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7256.t1
Unique NameGchil7256.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length543
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004441_piloncontigtig00004441_pilon:884774..887153 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog9707.XP_004392824.1
Preferred nameUBE2T
PFAMsUQ_con
Max annot lvl33208|Metazoa
KEGG koko:K13960
KEGG Pathwayko03460,map03460
GOsGO:0000209,GO:0003674,GO:0003682,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006464,GO:0006513,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019899,GO:0031625,GO:0031974,GO:0031981,GO:0032446,GO:0033554,GO:0034641,GO:0035519,GO:0036211,GO:0036297,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044314,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0051865,GO:0061630,GO:0061631,GO:0061650,GO:0061659,GO:0070013,GO:0070534,GO:0070647,GO:0070936,GO:0070979,GO:0071704,GO:0085020,GO:0090304,GO:0140096,GO:1901360,GO:1901564
Evalue4.86e-54
EggNOG OGsCOG5078@1|root,KOG0417@2759|Eukaryota,39TZT@33154|Opisthokonta,3BG3R@33208|Metazoa,3CZZU@33213|Bilateria,48AT7@7711|Chordata,492K2@7742|Vertebrata,3J745@40674|Mammalia,3ETA4@33554|Carnivora
EC2.3.2.23
DescriptionBelongs to the ubiquitin-conjugating enzyme family
COG categoryO
BRITEko00000,ko00001,ko01000,ko03400,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7256Gchil7256Gracilaria chilensis NLEC103_M9 malegenetig00004441_pilon 884774..887153 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7256.t1Gchil7256.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004441_pilon 884774..887153 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7256.t1.stop1Gchil7256.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004441_pilon 884774..884776 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7256.t1.CDS1Gchil7256.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 884774..885886 -
Gchil7256.t1.CDS2Gchil7256.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 886638..887153 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7256.t1.exon1Gchil7256.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 884774..885886 -
Gchil7256.t1.exon2Gchil7256.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 886638..887153 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7256.t1.intron1Gchil7256.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004441_pilon 885887..886637 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7256.t1.start1Gchil7256.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004441_pilon 887151..887153 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7256.t1 ID=Gchil7256.t1|Name=Gchil7256.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=543bp
MNSVANKRITRELQMLARGAAAPGIAAWARDDGSRLDVLHAEINGAPDTP
YEHGVFRLELNIPREYPFKPPRVRFLTKIYHPNVDSDGRICLDSLNMPPK
GAWKPSLNVATVLTSIQALMSTPNADDGLMVDITHEYRTNPAVFQRKAKQ
WTRLYAQPPHVAHCDASEPSHPQSNHPVILRPTHQKRSAMYLNDIFEQVP
NADLDNIPDPTGSAAFLPPDPGWTPAPLEEPDDDQDDEDEDDEDDQKRRT
PAGKKRKQELHRRHSKRYRDNLGELFASLEQLLPKVVPGCKLKTKSQIIA
NSVNAIKHLRTEVSTLEIQYVLSSPTNRTKWVEDTVSTALCFQNVVEPFM
SLLLTMQKWKHSELWSRHEMNVPSDRSESGVAMSNPTESIQDLHLSSPKK
FSLKLIDATSLQASSSILRASYKQFSEAARDQVISVADDTIVGRVSSSLA
PEVIDLRDLGSGGTFLRARVAEECGLVICLAVPILVRGHVYAVVLFFDDQ
PRANITQDRNVAQDLASSLGNCYGASSIHANRGEADNKTSSK*
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spliced messenger RNA

>Gchil7256.t1 ID=Gchil7256.t1|Name=Gchil7256.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1629bp|location=Sequence derived from alignment at tig00004441_pilon:884774..887153- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACTCAGTGGCCAATAAACGAATCACGCGCGAGCTGCAGATGCTCGC
GCGCGGCGCCGCCGCGCCCGGCATCGCCGCGTGGGCCCGTGACGACGGCT
CGCGATTAGATGTGCTTCACGCCGAGATCAACGGCGCGCCCGACACGCCC
TACGAGCACGGCGTGTTTCGGCTGGAACTCAACATTCCGCGCGAGTACCC
GTTCAAGCCGCCGCGCGTCAGATTCCTCACCAAGATCTACCACCCCAACG
TCGACTCGGACGGCCGCATCTGTCTGGACAGCCTCAATATGCCGCCCAAG
GGCGCTTGGAAACCTTCGCTCAACGTCGCTACTGTTCTCACTAGTATTCA
GGCGCTCATGTCCACCCCCAACGCCGATGATGGGCTCATGGTTGACATTA
CTCACGAGTACAGGACCAATCCGGCCGTGTTCCAGCGCAAGGCAAAGCAG
TGGACCCGTCTCTACGCCCAGCCGCCCCACGTGGCTCACTGCGACGCTTC
CGAGCCCAGTCACCCCCAATCCAACCACCCTGTAATCCTTCGCCCCACGC
ACCAGAAGCGCTCCGCGATGTACCTCAACGACATTTTTGAGCAGGTGCCT
AACGCAGACCTGGACAACATCCCCGACCCTACCGGCTCTGCAGCCTTCTT
GCCTCCGGACCCCGGCTGGACACCTGCGCCACTGGAGGAGCCCGACGACG
ACCAAGACGACGAAGATGAAGATGACGAAGACGATCAGAAGCGACGAACC
CCTGCAGGCAAAAAACGTAAACAGGAGCTTCACAGACGCCATTCCAAGCG
CTACCGTGACAACTTGGGTGAACTCTTCGCTTCACTGGAGCAACTCTTGC
CAAAAGTTGTTCCAGGCTGCAAACTAAAAACCAAGAGCCAGATTATTGCA
AACAGCGTAAATGCTATCAAACATCTTCGCACGGAGGTTTCCACTCTTGA
AATACAGTACGTCTTATCTAGTCCTACAAATCGCACAAAGTGGGTTGAGG
ACACCGTCAGCACCGCGCTGTGTTTCCAGAACGTGGTTGAACCATTCATG
AGCTTACTGCTCACCATGCAGAAATGGAAGCATTCAGAGCTGTGGTCACG
GCATGAGATGAATGTACCGAGCGACCGCTCTGAATCTGGAGTTGCCATGT
CAAATCCTACAGAATCCATTCAAGATCTACACCTGTCATCTCCAAAAAAG
TTTTCTCTCAAGCTTATAGACGCAACCTCATTGCAAGCCAGCAGCTCCAT
CCTGCGCGCATCCTACAAACAGTTTTCTGAAGCTGCCCGTGATCAGGTCA
TTAGCGTGGCGGACGATACTATTGTCGGGCGTGTTTCGTCTTCCCTAGCG
CCAGAAGTCATTGATCTTCGCGATCTAGGCTCTGGTGGAACATTCCTTCG
GGCGCGTGTCGCAGAGGAATGTGGGCTTGTCATCTGCCTTGCTGTTCCGA
TTCTCGTCAGAGGTCATGTCTATGCTGTTGTCCTATTTTTCGATGATCAG
CCGCGGGCAAACATAACTCAAGATCGTAACGTAGCTCAGGACCTGGCAAG
CAGCCTTGGGAATTGTTACGGCGCATCCAGCATTCATGCCAATCGTGGAG
AGGCTGATAATAAAACCTCATCGAAGTGA
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protein sequence of Gchil7256.t1

>Gchil7256.t1 ID=Gchil7256.t1|Name=Gchil7256.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=543bp
MNSVANKRITRELQMLARGAAAPGIAAWARDDGSRLDVLHAEINGAPDTP
YEHGVFRLELNIPREYPFKPPRVRFLTKIYHPNVDSDGRICLDSLNMPPK
GAWKPSLNVATVLTSIQALMSTPNADDGLMVDITHEYRTNPAVFQRKAKQ
WTRLYAQPPHVAHCDASEPSHPQSNHPVILRPTHQKRSAMYLNDIFEQVP
NADLDNIPDPTGSAAFLPPDPGWTPAPLEEPDDDQDDEDEDDEDDQKRRT
PAGKKRKQELHRRHSKRYRDNLGELFASLEQLLPKVVPGCKLKTKSQIIA
NSVNAIKHLRTEVSTLEIQYVLSSPTNRTKWVEDTVSTALCFQNVVEPFM
SLLLTMQKWKHSELWSRHEMNVPSDRSESGVAMSNPTESIQDLHLSSPKK
FSLKLIDATSLQASSSILRASYKQFSEAARDQVISVADDTIVGRVSSSLA
PEVIDLRDLGSGGTFLRARVAEECGLVICLAVPILVRGHVYAVVLFFDDQ
PRANITQDRNVAQDLASSLGNCYGASSIHANRGEADNKTSSK*
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mRNA from alignment at tig00004441_pilon:884774..887153-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7256.t1 ID=Gchil7256.t1|Name=Gchil7256.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2380bp|location=Sequence derived from alignment at tig00004441_pilon:884774..887153- (Gracilaria chilensis NLEC103_M9 male)
ATGAACTCAGTGGCCAATAAACGAATCACGCGCGAGCTGCAGATGCTCGC
GCGCGGCGCCGCCGCGCCCGGCATCGCCGCGTGGGCCCGTGACGACGGCT
CGCGATTAGATGTGCTTCACGCCGAGATCAACGGCGCGCCCGACACGCCC
TACGAGCACGGCGTGTTTCGGCTGGAACTCAACATTCCGCGCGAGTACCC
GTTCAAGCCGCCGCGCGTCAGATTCCTCACCAAGATCTACCACCCCAACG
TCGACTCGGACGGCCGCATCTGTCTGGACAGCCTCAATATGCCGCCCAAG
GGCGCTTGGAAACCTTCGCTCAACGTCGCTACTGTTCTCACTAGTATTCA
GGCGCTCATGTCCACCCCCAACGCCGATGATGGGCTCATGGTTGACATTA
CTCACGAGTACAGGACCAATCCGGCCGTGTTCCAGCGCAAGGCAAAGCAG
TGGACCCGTCTCTACGCCCAGCCGCCCCACGTGGCTCACTGCGACGCTTC
CGAGCCCAGTCACCCCGTTGAGTCGCACACAGAGCCAGCGCCTACGCCAG
CGCCAGATCCAGAGCAAGTGCAAAAGCCAGAGCAAAAGCCAGAGCAAAAG
CAAAAGCAAAAGCAAAAGCCTCATGCCGCAGAACCGCACTTGAAGAAAGC
CAGGACGCGATGATCACGCCCCCCACCATCGCTCTTCCCTCCATGCCATG
TACTTACCCTGTGCACTAATTGCTACCCTCACCAGCTCGTAGCCCAAGTC
GCAGCTCGCCAAGCTGGCATTGCTCTCACAACTGGTGCGTTTTCGCCAAG
GTGATAGCGTCAAGTATGATTCTTCTCGTCGAGACGCCCTTTCGGCAGCG
TTTGTGGATACAGTTTGAACATGGCCTCGAGGCATTGTGTCATACCATCG
ATATATATCTATATCTTCATACAAAGCGTGCAACCCGACATTTCTACTTC
TCAGCCAATCGGCCGATCGTATGTGCAAACAATTTACTGTAAGCCGCCGC
CTCAAGCGCACGGCCCTTTCGACGATACTTTCTGCTGAGCCCAGCTACAC
CCCACCCACTCTCCGCCCCTCTCCCCAAGCGACATGCGTCTCACACGCCG
TGCTGATAGCACTCCGCGCACCAGCGTCGGCACCGTGCAACTGAATCTTG
CCTGAGTGCTGGCATGCCTGCAACGAATAAGGGTTAGCAATTGCTAGCAC
CAACCCACAATAAACCAACTTCCAAGCACACACCCATCTCTCTCTCAGTT
GCCGAAACCCCTTTCAGCAATCCAACCACCCTGTAATCCTTCGCCCCACG
CACCAGAAGCGCTCCGCGATGTACCTCAACGACATTTTTGAGCAGGTGCC
TAACGCAGACCTGGACAACATCCCCGACCCTACCGGCTCTGCAGCCTTCT
TGCCTCCGGACCCCGGCTGGACACCTGCGCCACTGGAGGAGCCCGACGAC
GACCAAGACGACGAAGATGAAGATGACGAAGACGATCAGAAGCGACGAAC
CCCTGCAGGCAAAAAACGTAAACAGGAGCTTCACAGACGCCATTCCAAGC
GCTACCGTGACAACTTGGGTGAACTCTTCGCTTCACTGGAGCAACTCTTG
CCAAAAGTTGTTCCAGGCTGCAAACTAAAAACCAAGAGCCAGATTATTGC
AAACAGCGTAAATGCTATCAAACATCTTCGCACGGAGGTTTCCACTCTTG
AAATACAGTACGTCTTATCTAGTCCTACAAATCGCACAAAGTGGGTTGAG
GACACCGTCAGCACCGCGCTGTGTTTCCAGAACGTGGTTGAACCATTCAT
GAGCTTACTGCTCACCATGCAGAAATGGAAGCATTCAGAGCTGTGGTCAC
GGCATGAGATGAATGTACCGAGCGACCGCTCTGAATCTGGAGTTGCCATG
TCAAATCCTACAGAATCCATTCAAGATCTACACCTGTCATCTCCAAAAAA
GTTTTCTCTCAAGCTTATAGACGCAACCTCATTGCAAGCCAGCAGCTCCA
TCCTGCGCGCATCCTACAAACAGTTTTCTGAAGCTGCCCGTGATCAGGTC
ATTAGCGTGGCGGACGATACTATTGTCGGGCGTGTTTCGTCTTCCCTAGC
GCCAGAAGTCATTGATCTTCGCGATCTAGGCTCTGGTGGAACATTCCTTC
GGGCGCGTGTCGCAGAGGAATGTGGGCTTGTCATCTGCCTTGCTGTTCCG
ATTCTCGTCAGAGGTCATGTCTATGCTGTTGTCCTATTTTTCGATGATCA
GCCGCGGGCAAACATAACTCAAGATCGTAACGTAGCTCAGGACCTGGCAA
GCAGCCTTGGGAATTGTTACGGCGCATCCAGCATTCATGCCAATCGTGGA
GAGGCTGATAATAAAACCTCATCGAAGTGA
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Coding sequence (CDS) from alignment at tig00004441_pilon:884774..887153-

>Gchil7256.t1 ID=Gchil7256.t1|Name=Gchil7256.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1629bp|location=Sequence derived from alignment at tig00004441_pilon:884774..887153- (Gracilaria chilensis NLEC103_M9 male)
ATGAACTCAGTGGCCAATAAACGAATCACGCGCGAGCTGCAGATGCTCGC
GCGCGGCGCCGCCGCGCCCGGCATCGCCGCGTGGGCCCGTGACGACGGCT
CGCGATTAGATGTGCTTCACGCCGAGATCAACGGCGCGCCCGACACGCCC
TACGAGCACGGCGTGTTTCGGCTGGAACTCAACATTCCGCGCGAGTACCC
GTTCAAGCCGCCGCGCGTCAGATTCCTCACCAAGATCTACCACCCCAACG
TCGACTCGGACGGCCGCATCTGTCTGGACAGCCTCAATATGCCGCCCAAG
GGCGCTTGGAAACCTTCGCTCAACGTCGCTACTGTTCTCACTAGTATTCA
GGCGCTCATGTCCACCCCCAACGCCGATGATGGGCTCATGGTTGACATTA
CTCACGAGTACAGGACCAATCCGGCCGTGTTCCAGCGCAAGGCAAAGCAG
TGGACCCGTCTCTACGCCCAGCCGCCCCACGTGGCTCACTGCGACGCTTC
CGAGCCCAGTCACCCCCAATCCAACCACCCTGTAATCCTTCGCCCCACGC
ACCAGAAGCGCTCCGCGATGTACCTCAACGACATTTTTGAGCAGGTGCCT
AACGCAGACCTGGACAACATCCCCGACCCTACCGGCTCTGCAGCCTTCTT
GCCTCCGGACCCCGGCTGGACACCTGCGCCACTGGAGGAGCCCGACGACG
ACCAAGACGACGAAGATGAAGATGACGAAGACGATCAGAAGCGACGAACC
CCTGCAGGCAAAAAACGTAAACAGGAGCTTCACAGACGCCATTCCAAGCG
CTACCGTGACAACTTGGGTGAACTCTTCGCTTCACTGGAGCAACTCTTGC
CAAAAGTTGTTCCAGGCTGCAAACTAAAAACCAAGAGCCAGATTATTGCA
AACAGCGTAAATGCTATCAAACATCTTCGCACGGAGGTTTCCACTCTTGA
AATACAGTACGTCTTATCTAGTCCTACAAATCGCACAAAGTGGGTTGAGG
ACACCGTCAGCACCGCGCTGTGTTTCCAGAACGTGGTTGAACCATTCATG
AGCTTACTGCTCACCATGCAGAAATGGAAGCATTCAGAGCTGTGGTCACG
GCATGAGATGAATGTACCGAGCGACCGCTCTGAATCTGGAGTTGCCATGT
CAAATCCTACAGAATCCATTCAAGATCTACACCTGTCATCTCCAAAAAAG
TTTTCTCTCAAGCTTATAGACGCAACCTCATTGCAAGCCAGCAGCTCCAT
CCTGCGCGCATCCTACAAACAGTTTTCTGAAGCTGCCCGTGATCAGGTCA
TTAGCGTGGCGGACGATACTATTGTCGGGCGTGTTTCGTCTTCCCTAGCG
CCAGAAGTCATTGATCTTCGCGATCTAGGCTCTGGTGGAACATTCCTTCG
GGCGCGTGTCGCAGAGGAATGTGGGCTTGTCATCTGCCTTGCTGTTCCGA
TTCTCGTCAGAGGTCATGTCTATGCTGTTGTCCTATTTTTCGATGATCAG
CCGCGGGCAAACATAACTCAAGATCGTAACGTAGCTCAGGACCTGGCAAG
CAGCCTTGGGAATTGTTACGGCGCATCCAGCATTCATGCCAATCGTGGAG
AGGCTGATAATAAAACCTCATCGAAGTGA
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