Gchil7209.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7209.t1
Unique NameGchil7209.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length341
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004441_piloncontigtig00004441_pilon:543743..544765 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707172.1
Preferred nameFBXO9
PFAMsF-box-like
Max annot lvl2759|Eukaryota
KEGG rclassRC00078
KEGG koko:K10047,ko:K10295
KEGG ReactionR01185,R01186,R01187,R07674
KEGG Pathwayko00053,ko00562,ko01100,ko01110,ko04070,map00053,map00562,map01100,map01110,map04070
KEGG ModuleM00114,M00131
GOsGO:0000151,GO:0000209,GO:0002376,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005829,GO:0006417,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006952,GO:0006955,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009266,GO:0009408,GO:0009409,GO:0009628,GO:0009889,GO:0009966,GO:0009987,GO:0010033,GO:0010468,GO:0010498,GO:0010556,GO:0010608,GO:0010646,GO:0016567,GO:0016740,GO:0019005,GO:0019222,GO:0019538,GO:0019787,GO:0019941,GO:0023051,GO:0030154,GO:0030163,GO:0030674,GO:0031146,GO:0031323,GO:0031326,GO:0031461,GO:0032006,GO:0032268,GO:0032446,GO:0032502,GO:0032991,GO:0034248,GO:0036211,GO:0042221,GO:0042995,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0045087,GO:0045444,GO:0048583,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051246,GO:0051597,GO:0051603,GO:0051716,GO:0060090,GO:0060255,GO:0065007,GO:0070647,GO:0070887,GO:0071310,GO:0071406,GO:0071704,GO:0080090,GO:0090406,GO:0120025,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1902531,GO:1990234,GO:2000112
Evalue3.37e-36
EggNOG OGsKOG2997@1|root,KOG2997@2759|Eukaryota
EC3.1.3.25,3.1.3.93
DescriptionSCF-dependent proteasomal ubiquitin-dependent protein catabolic process
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7209Gchil7209Gracilaria chilensis NLEC103_M9 malegenetig00004441_pilon 543743..544765 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7209.t1.stop1Gchil7209.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004441_pilon 543743..543745 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7209.t1.CDS1Gchil7209.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 543743..544765 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7209.t1.exon1Gchil7209.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 543743..544765 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7209.t1.start1Gchil7209.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004441_pilon 544763..544765 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7209.t1Gchil7209.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004441_pilon 543743..544765 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7209.t1 ID=Gchil7209.t1|Name=Gchil7209.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=341bp
MVAAETEPKPWLQLYQTDFANLRSLYNNKHNLHDQPLSRLPTSESSTDEQ
EQQQPKLDILSLPGEVLSTICSHLDAEHLSTLAQVNSGLISHAYDPKHWR
RIARSTWPSESNQQLEKHLYAYKTWRVLCTQRPRMRTNALFVLRHQFTKT
ATRFAASEPQAPVFLVTYYRFLRFYTSGTVIGLTTPEAPHIAYRRVRDLC
GKPVSSDRDEVRPVVGSYTFDEIRRGVSVVLPMQHPKFPNMRGGHNVMEF
TLSSTVDGAFDRLHLVNHFAVMDGSSDSGNSLVSYTGDSYIEKPFRLIPL
LGFRDRVYREFPTDDALDLAQWYEMKKAARAEQKNKRSHR*
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spliced messenger RNA

>Gchil7209.t1 ID=Gchil7209.t1|Name=Gchil7209.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1023bp|location=Sequence derived from alignment at tig00004441_pilon:543743..544765- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGCTGCCGAAACTGAACCCAAGCCATGGCTTCAGCTCTATCAAAC
CGATTTTGCAAACCTTCGTTCGCTTTACAACAACAAACACAACCTGCACG
ACCAACCACTATCCAGACTCCCCACGTCCGAATCATCCACCGATGAACAA
GAACAACAACAGCCGAAGCTGGATATTCTCTCACTCCCAGGCGAAGTTCT
CTCAACTATCTGCTCTCACCTAGATGCCGAGCACCTCTCAACGTTAGCGC
AAGTCAATTCGGGCCTCATCTCACATGCATATGATCCGAAGCATTGGCGT
CGAATTGCACGCAGTACCTGGCCTTCTGAAAGCAATCAGCAACTTGAAAA
ACACCTGTACGCATACAAGACCTGGCGCGTGCTTTGTACCCAGCGCCCAC
GTATGCGCACCAACGCTTTATTTGTGCTACGACATCAGTTCACCAAGACT
GCAACTCGCTTTGCTGCCTCCGAACCGCAGGCACCTGTCTTTCTGGTCAC
TTACTACAGATTTCTTCGATTTTATACTTCGGGCACTGTTATCGGTCTCA
CCACACCAGAAGCGCCTCACATAGCATACCGTCGTGTCCGTGATCTTTGT
GGGAAGCCTGTCAGTTCTGACCGAGATGAGGTGCGCCCAGTCGTGGGCAG
TTATACGTTTGACGAAATCAGAAGGGGGGTGAGTGTTGTACTGCCAATGC
AACACCCAAAGTTCCCAAACATGCGCGGTGGCCACAATGTGATGGAGTTT
ACTTTGTCCAGTACGGTTGACGGCGCGTTTGACAGGCTTCATCTCGTCAA
CCATTTCGCTGTCATGGATGGTTCGAGTGACTCTGGAAACTCTTTGGTTT
CATACACGGGCGACTCTTACATAGAAAAACCATTCCGGCTGATACCTCTT
CTAGGTTTCCGTGACCGTGTTTATCGCGAATTCCCCACAGATGATGCCCT
GGACCTGGCTCAATGGTACGAAATGAAGAAAGCTGCGCGTGCAGAGCAGA
AAAACAAGCGCTCTCATCGATAG
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protein sequence of Gchil7209.t1

>Gchil7209.t1 ID=Gchil7209.t1|Name=Gchil7209.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=341bp
MVAAETEPKPWLQLYQTDFANLRSLYNNKHNLHDQPLSRLPTSESSTDEQ
EQQQPKLDILSLPGEVLSTICSHLDAEHLSTLAQVNSGLISHAYDPKHWR
RIARSTWPSESNQQLEKHLYAYKTWRVLCTQRPRMRTNALFVLRHQFTKT
ATRFAASEPQAPVFLVTYYRFLRFYTSGTVIGLTTPEAPHIAYRRVRDLC
GKPVSSDRDEVRPVVGSYTFDEIRRGVSVVLPMQHPKFPNMRGGHNVMEF
TLSSTVDGAFDRLHLVNHFAVMDGSSDSGNSLVSYTGDSYIEKPFRLIPL
LGFRDRVYREFPTDDALDLAQWYEMKKAARAEQKNKRSHR*
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mRNA from alignment at tig00004441_pilon:543743..544765-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7209.t1 ID=Gchil7209.t1|Name=Gchil7209.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1023bp|location=Sequence derived from alignment at tig00004441_pilon:543743..544765- (Gracilaria chilensis NLEC103_M9 male)
ATGGTTGCTGCCGAAACTGAACCCAAGCCATGGCTTCAGCTCTATCAAAC
CGATTTTGCAAACCTTCGTTCGCTTTACAACAACAAACACAACCTGCACG
ACCAACCACTATCCAGACTCCCCACGTCCGAATCATCCACCGATGAACAA
GAACAACAACAGCCGAAGCTGGATATTCTCTCACTCCCAGGCGAAGTTCT
CTCAACTATCTGCTCTCACCTAGATGCCGAGCACCTCTCAACGTTAGCGC
AAGTCAATTCGGGCCTCATCTCACATGCATATGATCCGAAGCATTGGCGT
CGAATTGCACGCAGTACCTGGCCTTCTGAAAGCAATCAGCAACTTGAAAA
ACACCTGTACGCATACAAGACCTGGCGCGTGCTTTGTACCCAGCGCCCAC
GTATGCGCACCAACGCTTTATTTGTGCTACGACATCAGTTCACCAAGACT
GCAACTCGCTTTGCTGCCTCCGAACCGCAGGCACCTGTCTTTCTGGTCAC
TTACTACAGATTTCTTCGATTTTATACTTCGGGCACTGTTATCGGTCTCA
CCACACCAGAAGCGCCTCACATAGCATACCGTCGTGTCCGTGATCTTTGT
GGGAAGCCTGTCAGTTCTGACCGAGATGAGGTGCGCCCAGTCGTGGGCAG
TTATACGTTTGACGAAATCAGAAGGGGGGTGAGTGTTGTACTGCCAATGC
AACACCCAAAGTTCCCAAACATGCGCGGTGGCCACAATGTGATGGAGTTT
ACTTTGTCCAGTACGGTTGACGGCGCGTTTGACAGGCTTCATCTCGTCAA
CCATTTCGCTGTCATGGATGGTTCGAGTGACTCTGGAAACTCTTTGGTTT
CATACACGGGCGACTCTTACATAGAAAAACCATTCCGGCTGATACCTCTT
CTAGGTTTCCGTGACCGTGTTTATCGCGAATTCCCCACAGATGATGCCCT
GGACCTGGCTCAATGGTACGAAATGAAGAAAGCTGCGCGTGCAGAGCAGA
AAAACAAGCGCTCTCATCGATAG
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Coding sequence (CDS) from alignment at tig00004441_pilon:543743..544765-

>Gchil7209.t1 ID=Gchil7209.t1|Name=Gchil7209.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1023bp|location=Sequence derived from alignment at tig00004441_pilon:543743..544765- (Gracilaria chilensis NLEC103_M9 male)
ATGGTTGCTGCCGAAACTGAACCCAAGCCATGGCTTCAGCTCTATCAAAC
CGATTTTGCAAACCTTCGTTCGCTTTACAACAACAAACACAACCTGCACG
ACCAACCACTATCCAGACTCCCCACGTCCGAATCATCCACCGATGAACAA
GAACAACAACAGCCGAAGCTGGATATTCTCTCACTCCCAGGCGAAGTTCT
CTCAACTATCTGCTCTCACCTAGATGCCGAGCACCTCTCAACGTTAGCGC
AAGTCAATTCGGGCCTCATCTCACATGCATATGATCCGAAGCATTGGCGT
CGAATTGCACGCAGTACCTGGCCTTCTGAAAGCAATCAGCAACTTGAAAA
ACACCTGTACGCATACAAGACCTGGCGCGTGCTTTGTACCCAGCGCCCAC
GTATGCGCACCAACGCTTTATTTGTGCTACGACATCAGTTCACCAAGACT
GCAACTCGCTTTGCTGCCTCCGAACCGCAGGCACCTGTCTTTCTGGTCAC
TTACTACAGATTTCTTCGATTTTATACTTCGGGCACTGTTATCGGTCTCA
CCACACCAGAAGCGCCTCACATAGCATACCGTCGTGTCCGTGATCTTTGT
GGGAAGCCTGTCAGTTCTGACCGAGATGAGGTGCGCCCAGTCGTGGGCAG
TTATACGTTTGACGAAATCAGAAGGGGGGTGAGTGTTGTACTGCCAATGC
AACACCCAAAGTTCCCAAACATGCGCGGTGGCCACAATGTGATGGAGTTT
ACTTTGTCCAGTACGGTTGACGGCGCGTTTGACAGGCTTCATCTCGTCAA
CCATTTCGCTGTCATGGATGGTTCGAGTGACTCTGGAAACTCTTTGGTTT
CATACACGGGCGACTCTTACATAGAAAAACCATTCCGGCTGATACCTCTT
CTAGGTTTCCGTGACCGTGTTTATCGCGAATTCCCCACAGATGATGCCCT
GGACCTGGCTCAATGGTACGAAATGAAGAAAGCTGCGCGTGCAGAGCAGA
AAAACAAGCGCTCTCATCGATAG
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