Gchil7307.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7307.t1
Unique NameGchil7307.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length107
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004441_piloncontigtig00004441_pilon:1011370..1011752 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog588596.U9U5S2
PFAMsRab5ip
Max annot lvl4751|Fungi
GOsGO:0000045,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006457,GO:0006914,GO:0006996,GO:0007033,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0016236,GO:0022406,GO:0022607,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0032991,GO:0034975,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0051179,GO:0051640,GO:0051641,GO:0061919,GO:0070925,GO:0071840,GO:0072546,GO:0098796,GO:0098827,GO:0140056,GO:1905037,GO:1990456
Evalue1.34e-08
EggNOG OGsKOG4455@1|root,KOG4455@2759|Eukaryota,3A4AB@33154|Opisthokonta,3P4XG@4751|Fungi
DescriptionSaccharomyces cerevisiae YLL014w
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7307Gchil7307Gracilaria chilensis NLEC103_M9 malegenetig00004441_pilon 1011370..1011752 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7307.t1Gchil7307.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004441_pilon 1011370..1011752 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7307.t1.stop1Gchil7307.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004441_pilon 1011370..1011372 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7307.t1.CDS1Gchil7307.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 1011370..1011616 -
Gchil7307.t1.CDS2Gchil7307.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 1011679..1011752 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7307.t1.exon1Gchil7307.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 1011370..1011616 -
Gchil7307.t1.exon2Gchil7307.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 1011679..1011752 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7307.t1.intron1Gchil7307.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004441_pilon 1011617..1011678 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7307.t1.start1Gchil7307.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004441_pilon 1011750..1011752 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7307.t1 ID=Gchil7307.t1|Name=Gchil7307.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=107bp
MTILSIQGVKLQNLYAANQKILLFIRIFGYAAGGAAAGILGLQGFEGFLF
YILVSLMITITLLFKTFFDPGRYLRAPISTVLFFGAFGRNSILTYILFWT
MLFSFR*
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spliced messenger RNA

>Gchil7307.t1 ID=Gchil7307.t1|Name=Gchil7307.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=321bp|location=Sequence derived from alignment at tig00004441_pilon:1011370..1011752- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGATTCTGTCGATCCAGGGCGTAAAGTTGCAAAACCTTTACGCAGC
AAACCAAAAGATTTTGCTTTTCATACGCATATTTGGATATGCAGCCGGTG
GAGCAGCGGCAGGTATACTCGGATTGCAAGGCTTCGAAGGCTTCTTATTC
TACATTCTTGTTTCCCTCATGATTACGATCACCCTTCTGTTCAAAACTTT
TTTCGACCCAGGAAGATATCTTCGAGCTCCCATATCTACAGTTCTATTTT
TTGGAGCCTTCGGCCGAAACTCAATCCTTACCTATATTCTCTTCTGGACC
ATGCTCTTCTCCTTTCGTTAA
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protein sequence of Gchil7307.t1

>Gchil7307.t1 ID=Gchil7307.t1|Name=Gchil7307.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=107bp
MTILSIQGVKLQNLYAANQKILLFIRIFGYAAGGAAAGILGLQGFEGFLF
YILVSLMITITLLFKTFFDPGRYLRAPISTVLFFGAFGRNSILTYILFWT
MLFSFR*
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mRNA from alignment at tig00004441_pilon:1011370..1011752-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7307.t1 ID=Gchil7307.t1|Name=Gchil7307.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=383bp|location=Sequence derived from alignment at tig00004441_pilon:1011370..1011752- (Gracilaria chilensis NLEC103_M9 male)
ATGACGATTCTGTCGATCCAGGGCGTAAAGTTGCAAAACCTTTACGCAGC
AAACCAAAAGATTTTGCTTTTCATGTACGTCTATTATTGACTACAACAGT
TAATGCGCATACTACGCTTGTCTAACACCGTAACAGACGCATATTTGGAT
ATGCAGCCGGTGGAGCAGCGGCAGGTATACTCGGATTGCAAGGCTTCGAA
GGCTTCTTATTCTACATTCTTGTTTCCCTCATGATTACGATCACCCTTCT
GTTCAAAACTTTTTTCGACCCAGGAAGATATCTTCGAGCTCCCATATCTA
CAGTTCTATTTTTTGGAGCCTTCGGCCGAAACTCAATCCTTACCTATATT
CTCTTCTGGACCATGCTCTTCTCCTTTCGTTAA
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Coding sequence (CDS) from alignment at tig00004441_pilon:1011370..1011752-

>Gchil7307.t1 ID=Gchil7307.t1|Name=Gchil7307.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=321bp|location=Sequence derived from alignment at tig00004441_pilon:1011370..1011752- (Gracilaria chilensis NLEC103_M9 male)
ATGACGATTCTGTCGATCCAGGGCGTAAAGTTGCAAAACCTTTACGCAGC
AAACCAAAAGATTTTGCTTTTCATACGCATATTTGGATATGCAGCCGGTG
GAGCAGCGGCAGGTATACTCGGATTGCAAGGCTTCGAAGGCTTCTTATTC
TACATTCTTGTTTCCCTCATGATTACGATCACCCTTCTGTTCAAAACTTT
TTTCGACCCAGGAAGATATCTTCGAGCTCCCATATCTACAGTTCTATTTT
TTGGAGCCTTCGGCCGAAACTCAATCCTTACCTATATTCTCTTCTGGACC
ATGCTCTTCTCCTTTCGTTAA
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