Gchil7197.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7197.t1
Unique NameGchil7197.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length273
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004441_piloncontigtig00004441_pilon:488468..489510 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704606.1
PFAMsFer4,Fer4_9,LdpA_C
Max annot lvl2759|Eukaryota
Evalue7.25e-54
EggNOG OGsCOG1142@1|root,2QU4W@2759|Eukaryota
DescriptionIron-Sulfur binding protein C terminal
COG categoryC
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7197Gchil7197Gracilaria chilensis NLEC103_M9 malegenetig00004441_pilon 488468..489510 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7197.t1Gchil7197.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004441_pilon 488468..489510 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7197.t1.CDS1Gchil7197.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 488468..488470 +
Gchil7197.t1.CDS2Gchil7197.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 488544..488921 +
Gchil7197.t1.CDS3Gchil7197.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 488991..489263 +
Gchil7197.t1.CDS4Gchil7197.t1.CDS4Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 489346..489510 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7197.t1.exon1Gchil7197.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 488468..488470 +
Gchil7197.t1.exon2Gchil7197.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 488544..488921 +
Gchil7197.t1.exon3Gchil7197.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 488991..489263 +
Gchil7197.t1.exon4Gchil7197.t1.exon4Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 489346..489510 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7197.t1.start1Gchil7197.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004441_pilon 488468..488470 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7197.t1.intron1Gchil7197.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004441_pilon 488471..488543 +
Gchil7197.t1.intron2Gchil7197.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004441_pilon 488922..488990 +
Gchil7197.t1.intron3Gchil7197.t1.intron3Gracilaria chilensis NLEC103_M9 maleintrontig00004441_pilon 489264..489345 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7197.t1.stop1Gchil7197.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004441_pilon 489508..489510 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7197.t1 ID=Gchil7197.t1|Name=Gchil7197.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=273bp
MDGTILNSNSGISIDNITAVNRLLEETGVLFVPATGKSRVGALRSMKKLG
ERLRQIYPYGCPGVYLQGLLVFNTKGEVVYENKCDAKLTQAVTSIAKELE
MPLIAYSRDRILCEEKHEIMDLLPSYHEPAATQVEDWEKAFDATPLNKFI
FMAEPKLIDQLRPLVAEKVGEMGNLTQAQSNMLEVLPPNSSKGDGVRRLL
DDLDVHPDNVLAIGDAENDLELLKMVGYSCAVGNALPSVKEVAMFKDLPT
NDEHAVAHAIGRFFFNEYVEVK*
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spliced messenger RNA

>Gchil7197.t1 ID=Gchil7197.t1|Name=Gchil7197.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=819bp|location=Sequence derived from alignment at tig00004441_pilon:488468..489510+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGGAACTATTTTGAATAGTAATTCAGGCATTTCAATAGACAACAT
CACAGCGGTAAACAGACTACTCGAAGAGACTGGTGTTTTGTTTGTTCCTG
CCACTGGAAAATCTAGAGTTGGTGCTCTCCGTTCTATGAAGAAACTTGGG
GAACGCTTGCGACAAATATATCCATATGGATGTCCTGGGGTGTACCTTCA
AGGCCTCCTAGTTTTCAACACCAAGGGAGAAGTTGTTTATGAGAACAAAT
GTGATGCAAAACTAACCCAGGCAGTTACGAGTATCGCGAAGGAGTTGGAG
ATGCCTCTTATCGCATATAGTCGTGATCGGATTTTATGTGAAGAAAAGCA
CGAAATTATGGATCTCCTTCCATCCTACCACGAACCGGCTGCGACGCAAG
TAGAAGATTGGGAAAAGGCCTTCGACGCAACGCCGTTAAATAAGTTCATT
TTCATGGCCGAACCGAAGCTTATTGATCAACTGCGCCCGCTAGTGGCAGA
AAAAGTTGGTGAAATGGGAAACTTGACTCAAGCTCAGAGCAACATGTTAG
AAGTGCTCCCGCCTAATTCTTCCAAGGGAGATGGAGTACGACGTTTGCTG
GATGACCTTGATGTTCATCCAGACAATGTGCTAGCAATTGGAGACGCTGA
AAACGATTTGGAGCTACTGAAAATGGTAGGGTACTCGTGTGCTGTGGGAA
ATGCATTGCCTTCTGTGAAGGAAGTTGCCATGTTTAAAGACTTGCCGACT
AACGACGAACACGCGGTTGCGCATGCAATTGGAAGATTCTTTTTCAATGA
GTATGTTGAGGTCAAGTAA
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protein sequence of Gchil7197.t1

>Gchil7197.t1 ID=Gchil7197.t1|Name=Gchil7197.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=273bp
MDGTILNSNSGISIDNITAVNRLLEETGVLFVPATGKSRVGALRSMKKLG
ERLRQIYPYGCPGVYLQGLLVFNTKGEVVYENKCDAKLTQAVTSIAKELE
MPLIAYSRDRILCEEKHEIMDLLPSYHEPAATQVEDWEKAFDATPLNKFI
FMAEPKLIDQLRPLVAEKVGEMGNLTQAQSNMLEVLPPNSSKGDGVRRLL
DDLDVHPDNVLAIGDAENDLELLKMVGYSCAVGNALPSVKEVAMFKDLPT
NDEHAVAHAIGRFFFNEYVEVK*
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mRNA from alignment at tig00004441_pilon:488468..489510+

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7197.t1 ID=Gchil7197.t1|Name=Gchil7197.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1043bp|location=Sequence derived from alignment at tig00004441_pilon:488468..489510+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTAAGCTTTTTTTTTATAATGGTGTATCGGACATCTCAGCTCTATAT
ACTGACAAAGGATCCTTTATCCTCAGGATGGAACTATTTTGAATAGTAAT
TCAGGCATTTCAATAGACAACATCACAGCGGTAAACAGACTACTCGAAGA
GACTGGTGTTTTGTTTGTTCCTGCCACTGGAAAATCTAGAGTTGGTGCTC
TCCGTTCTATGAAGAAACTTGGGGAACGCTTGCGACAAATATATCCATAT
GGATGTCCTGGGGTGTACCTTCAAGGCCTCCTAGTTTTCAACACCAAGGG
AGAAGTTGTTTATGAGAACAAATGTGATGCAAAACTAACCCAGGCAGTTA
CGAGTATCGCGAAGGAGTTGGAGATGCCTCTTATCGCATATAGTCGTGAT
CGGATTTTATGTGAAGAAAAGCACGAAATTATGGATCTCCTTCCATCCTA
CCACGTATGTTGTCTATTTTTTTGGTTTGTCTTTTGAACACCTTCTAACT
GCTTTGTGTTCTCTATATCTCAGGAACCGGCTGCGACGCAAGTAGAAGAT
TGGGAAAAGGCCTTCGACGCAACGCCGTTAAATAAGTTCATTTTCATGGC
CGAACCGAAGCTTATTGATCAACTGCGCCCGCTAGTGGCAGAAAAAGTTG
GTGAAATGGGAAACTTGACTCAAGCTCAGAGCAACATGTTAGAAGTGCTC
CCGCCTAATTCTTCCAAGGGAGATGGAGTACGACGTTTGCTGGATGACCT
TGATGTTCATCCAGACAATGTGCTAGCAATTGGAGACGCTGAAAACGTAA
GTTGACCTTGTTCATTCTGATGTTGCACGCGACGAGTTGAGCCGCGCTTG
GAACCGTTTATACTAACCCGAACAACAGGATTTGGAGCTACTGAAAATGG
TAGGGTACTCGTGTGCTGTGGGAAATGCATTGCCTTCTGTGAAGGAAGTT
GCCATGTTTAAAGACTTGCCGACTAACGACGAACACGCGGTTGCGCATGC
AATTGGAAGATTCTTTTTCAATGAGTATGTTGAGGTCAAGTAA
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Coding sequence (CDS) from alignment at tig00004441_pilon:488468..489510+

>Gchil7197.t1 ID=Gchil7197.t1|Name=Gchil7197.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=819bp|location=Sequence derived from alignment at tig00004441_pilon:488468..489510+ (Gracilaria chilensis NLEC103_M9 male)
ATGGATGGAACTATTTTGAATAGTAATTCAGGCATTTCAATAGACAACAT
CACAGCGGTAAACAGACTACTCGAAGAGACTGGTGTTTTGTTTGTTCCTG
CCACTGGAAAATCTAGAGTTGGTGCTCTCCGTTCTATGAAGAAACTTGGG
GAACGCTTGCGACAAATATATCCATATGGATGTCCTGGGGTGTACCTTCA
AGGCCTCCTAGTTTTCAACACCAAGGGAGAAGTTGTTTATGAGAACAAAT
GTGATGCAAAACTAACCCAGGCAGTTACGAGTATCGCGAAGGAGTTGGAG
ATGCCTCTTATCGCATATAGTCGTGATCGGATTTTATGTGAAGAAAAGCA
CGAAATTATGGATCTCCTTCCATCCTACCACGAACCGGCTGCGACGCAAG
TAGAAGATTGGGAAAAGGCCTTCGACGCAACGCCGTTAAATAAGTTCATT
TTCATGGCCGAACCGAAGCTTATTGATCAACTGCGCCCGCTAGTGGCAGA
AAAAGTTGGTGAAATGGGAAACTTGACTCAAGCTCAGAGCAACATGTTAG
AAGTGCTCCCGCCTAATTCTTCCAAGGGAGATGGAGTACGACGTTTGCTG
GATGACCTTGATGTTCATCCAGACAATGTGCTAGCAATTGGAGACGCTGA
AAACGATTTGGAGCTACTGAAAATGGTAGGGTACTCGTGTGCTGTGGGAA
ATGCATTGCCTTCTGTGAAGGAAGTTGCCATGTTTAAAGACTTGCCGACT
AACGACGAACACGCGGTTGCGCATGCAATTGGAAGATTCTTTTTCAATGA
GTATGTTGAGGTCAAGTAA
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