Gchil7105.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7105.t1
Unique NameGchil7105.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length240
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004441_piloncontigtig00004441_pilon:141689..142740 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703690.1
Preferred nameYIPF6
PFAMsYip1
Max annot lvl2759|Eukaryota
GOsGO:0000138,GO:0002064,GO:0002065,GO:0002066,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005794,GO:0005795,GO:0005797,GO:0005798,GO:0005801,GO:0005802,GO:0007275,GO:0008150,GO:0009888,GO:0009987,GO:0012505,GO:0030134,GO:0030135,GO:0030154,GO:0030855,GO:0031410,GO:0031982,GO:0031984,GO:0031985,GO:0032501,GO:0032502,GO:0035295,GO:0042802,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0048468,GO:0048565,GO:0048731,GO:0048856,GO:0048869,GO:0055123,GO:0060429,GO:0060575,GO:0060576,GO:0097708,GO:0098791
Evalue1.17e-70
EggNOG OGsCOG5080@1|root,KOG2946@2759|Eukaryota
Descriptionintestinal epithelial cell development
COG categoryU
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7105Gchil7105Gracilaria chilensis NLEC103_M9 malegenetig00004441_pilon 141689..142740 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7105.t1Gchil7105.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004441_pilon 141689..142740 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7105.t1.start1Gchil7105.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004441_pilon 141689..141691 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7105.t1.CDS1Gchil7105.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 141689..141769 +
Gchil7105.t1.CDS2Gchil7105.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 141858..141902 +
Gchil7105.t1.CDS3Gchil7105.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 141973..142160 +
Gchil7105.t1.CDS4Gchil7105.t1.CDS4Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 142231..142388 +
Gchil7105.t1.CDS5Gchil7105.t1.CDS5Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 142493..142740 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7105.t1.exon1Gchil7105.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 141689..141769 +
Gchil7105.t1.exon2Gchil7105.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 141858..141902 +
Gchil7105.t1.exon3Gchil7105.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 141973..142160 +
Gchil7105.t1.exon4Gchil7105.t1.exon4Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 142231..142388 +
Gchil7105.t1.exon5Gchil7105.t1.exon5Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 142493..142740 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7105.t1.intron1Gchil7105.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004441_pilon 141770..141857 +
Gchil7105.t1.intron2Gchil7105.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004441_pilon 141903..141972 +
Gchil7105.t1.intron3Gchil7105.t1.intron3Gracilaria chilensis NLEC103_M9 maleintrontig00004441_pilon 142161..142230 +
Gchil7105.t1.intron4Gchil7105.t1.intron4Gracilaria chilensis NLEC103_M9 maleintrontig00004441_pilon 142389..142492 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7105.t1.stop1Gchil7105.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004441_pilon 142738..142740 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7105.t1 ID=Gchil7105.t1|Name=Gchil7105.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=240bp
MTDLSQQFGENTIEEPVSETILRDLRLVGRRLLMVMIPSISSSAKRAELR
DWDLWGPFFLCMSLAVMLSITAHDEASVVFSVIFVIIWVGAAVITINGQL
LGGRLSFFQSVCFLGYCIFPILLSAVACWLINSFVKNDLAVVFRFLSVFI
SLLWSIWASSSFMTDARFPEGRKLLALYPVILFYLSLAWIVLIGFQRESS
PHSAIAEGTLPNNVTVGGGSEGSHMFSQGSRLIAPHGSL*
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spliced messenger RNA

>Gchil7105.t1 ID=Gchil7105.t1|Name=Gchil7105.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=720bp|location=Sequence derived from alignment at tig00004441_pilon:141689..142740+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGACTTATCCCAGCAATTTGGGGAGAATACAATCGAAGAACCTGT
TTCAGAGACAATCCTTCGTGATCTTCGACTGGTCGGAAGACGACTCCTCA
TGGTCATGATTCCATCAATCAGTTCTAGTGCAAAGCGTGCTGAGCTTCGC
GATTGGGATCTTTGGGGCCCGTTTTTCTTATGCATGTCTTTGGCTGTCAT
GCTCAGCATCACTGCCCATGACGAAGCTTCAGTTGTCTTCTCTGTTATTT
TCGTCATTATTTGGGTTGGTGCGGCTGTGATCACTATCAATGGACAACTT
CTTGGGGGAAGACTCTCGTTCTTTCAAAGCGTTTGCTTTTTGGGGTATTG
TATTTTCCCCATTCTTCTCAGCGCTGTTGCGTGCTGGCTTATCAATTCAT
TTGTCAAGAACGACCTAGCCGTAGTATTTCGATTTTTGTCCGTTTTTATA
TCGCTGCTATGGTCAATATGGGCCTCATCCAGTTTCATGACTGATGCTAG
ATTTCCAGAAGGCCGTAAGCTGTTGGCTTTGTATCCAGTCATTCTGTTTT
ACCTGTCCCTTGCATGGATTGTTCTCATCGGCTTCCAACGCGAGTCTTCC
CCACATTCAGCTATAGCTGAAGGCACTCTACCAAATAATGTGACTGTTGG
AGGTGGTTCAGAAGGAAGCCATATGTTTTCACAAGGTAGTCGTCTCATTG
CACCACACGGTTCACTCTAG
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protein sequence of Gchil7105.t1

>Gchil7105.t1 ID=Gchil7105.t1|Name=Gchil7105.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=240bp
MTDLSQQFGENTIEEPVSETILRDLRLVGRRLLMVMIPSISSSAKRAELR
DWDLWGPFFLCMSLAVMLSITAHDEASVVFSVIFVIIWVGAAVITINGQL
LGGRLSFFQSVCFLGYCIFPILLSAVACWLINSFVKNDLAVVFRFLSVFI
SLLWSIWASSSFMTDARFPEGRKLLALYPVILFYLSLAWIVLIGFQRESS
PHSAIAEGTLPNNVTVGGGSEGSHMFSQGSRLIAPHGSL*
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mRNA from alignment at tig00004441_pilon:141689..142740+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7105.t1 ID=Gchil7105.t1|Name=Gchil7105.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1052bp|location=Sequence derived from alignment at tig00004441_pilon:141689..142740+ (Gracilaria chilensis NLEC103_M9 male)
ATGACTGACTTATCCCAGCAATTTGGGGAGAATACAATCGAAGAACCTGT
TTCAGAGACAATCCTTCGTGATCTTCGACTGGTAAGTTCATTCCCTTTAC
GTGTGTACACTAGAAGCTCCAACTCATTCTAATGCGTTTCTGGCTCATAC
CTAAATGTTGCGATAAAAGGTCGGAAGACGACTCCTCATGGTCATGATTC
CATCAATCAGTTCTGTAAGCGTATTCGCTCTTTGTTTGAATCACTCTGCG
AATACACCATTCTTAAATACTAACTATACCACAGAGTGCAAAGCGTGCTG
AGCTTCGCGATTGGGATCTTTGGGGCCCGTTTTTCTTATGCATGTCTTTG
GCTGTCATGCTCAGCATCACTGCCCATGACGAAGCTTCAGTTGTCTTCTC
TGTTATTTTCGTCATTATTTGGGTTGGTGCGGCTGTGATCACTATCAATG
GACAACTTCTTGGGGGAAGACTGTGAGTTGTTCTCTTCTACATCCACGTA
TTTCATACGCTAGAGTGCTAACCACATCATTCTGGTTTACAGCTCGTTCT
TTCAAAGCGTTTGCTTTTTGGGGTATTGTATTTTCCCCATTCTTCTCAGC
GCTGTTGCGTGCTGGCTTATCAATTCATTTGTCAAGAACGACCTAGCCGT
AGTATTTCGATTTTTGTCCGTTTTTATATCGCTGCTATGGTCAATATGGG
GTAAGTTTGCGATCCTATGTTTTGGACAAGAGCCAAGGCGATGCAAAAAA
GCGCTAACTCACGTACATCTATCTCTCTTTTATCCTCTTTTACTTCTGAA
ACAGCCTCATCCAGTTTCATGACTGATGCTAGATTTCCAGAAGGCCGTAA
GCTGTTGGCTTTGTATCCAGTCATTCTGTTTTACCTGTCCCTTGCATGGA
TTGTTCTCATCGGCTTCCAACGCGAGTCTTCCCCACATTCAGCTATAGCT
GAAGGCACTCTACCAAATAATGTGACTGTTGGAGGTGGTTCAGAAGGAAG
CCATATGTTTTCACAAGGTAGTCGTCTCATTGCACCACACGGTTCACTCT
AG
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Coding sequence (CDS) from alignment at tig00004441_pilon:141689..142740+

>Gchil7105.t1 ID=Gchil7105.t1|Name=Gchil7105.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=720bp|location=Sequence derived from alignment at tig00004441_pilon:141689..142740+ (Gracilaria chilensis NLEC103_M9 male)
ATGACTGACTTATCCCAGCAATTTGGGGAGAATACAATCGAAGAACCTGT
TTCAGAGACAATCCTTCGTGATCTTCGACTGGTCGGAAGACGACTCCTCA
TGGTCATGATTCCATCAATCAGTTCTAGTGCAAAGCGTGCTGAGCTTCGC
GATTGGGATCTTTGGGGCCCGTTTTTCTTATGCATGTCTTTGGCTGTCAT
GCTCAGCATCACTGCCCATGACGAAGCTTCAGTTGTCTTCTCTGTTATTT
TCGTCATTATTTGGGTTGGTGCGGCTGTGATCACTATCAATGGACAACTT
CTTGGGGGAAGACTCTCGTTCTTTCAAAGCGTTTGCTTTTTGGGGTATTG
TATTTTCCCCATTCTTCTCAGCGCTGTTGCGTGCTGGCTTATCAATTCAT
TTGTCAAGAACGACCTAGCCGTAGTATTTCGATTTTTGTCCGTTTTTATA
TCGCTGCTATGGTCAATATGGGCCTCATCCAGTTTCATGACTGATGCTAG
ATTTCCAGAAGGCCGTAAGCTGTTGGCTTTGTATCCAGTCATTCTGTTTT
ACCTGTCCCTTGCATGGATTGTTCTCATCGGCTTCCAACGCGAGTCTTCC
CCACATTCAGCTATAGCTGAAGGCACTCTACCAAATAATGTGACTGTTGG
AGGTGGTTCAGAAGGAAGCCATATGTTTTCACAAGGTAGTCGTCTCATTG
CACCACACGGTTCACTCTAG
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