Gchil7244.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil7244.t1
Unique NameGchil7244.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length306
Homology
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BLAST of Gchil7244.t1 vs. uniprot
Match: A0A2V3J3W0_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3W0_9FLOR)

HSP 1 Score: 211 bits (537), Expect = 2.160e-63
Identity = 122/298 (40.94%), Postives = 180/298 (60.40%), Query Frame = 0 
Query:    5 SDIGVVVIVGRNRWRLQISPSATFSHLRRLVEEKESTVEHGLRLIFKGTSFPDSCALKDAAVADGAKMMAMRTSLQHQQERVEEKRALIAARQASLAHMNRHASASDAAASSSAKVPSHANPARSAADCILGDERDDAVPSVFILHRGQKYRLNVQMSDSVLSVKKNISSILRIESKPSDMRLVFNAKYLRDDVTLQQVDAKNGSSFMVFFNASHHDAVEDKRQTELIERKLVLLEAKVKTLARQAEHRLLDTVDLPLKKAELHGTVVYLRETLSLVKIYDDRRRVIEERIQAAENTL 302
            SD+ + VI G+  W +++S   TF  LR  +EEKE TV  GLRLI KG S PD   L +  V+ G+KMM MRTS Q +QE    KR  + +   SL+ +   +S     ++ +    S+A P       +LGD + D V SV ++    KYR+N++M++SV+ +K+  + I  I SK S+MRL+F  K+L+D+  L +   K+GSS M+ FNA HHDA +D  +   I++KL  LEAK +++A QAEHRLLD+VDL +KK+EL      LR+ LS V+  D+RR  +E ++   E  +
Sbjct:    2 SDLTITVIAGKKGWEVKVSSDITFGDLRTQIEEKEGTVAGGLRLICKGRSHPDHLKLSEVGVSTGSKMMVMRTSKQKEQEXXXXKRTKLQSDYKSLSELRAQSSVISKPSTDAGASSSNAKPVVREIG-VLGDPQQDCVTSVILIQGKNKYRVNIEMTESVVVLKQKAAFIDGINSKASNMRLLFKGKFLKDECNLSEYGVKDGSSLMLLFNAKHHDAKDDFIEMGSIKKKLDELEAKTRSVASQAEHRLLDSVDLAVKKSELQDIFTRLRDNLSSVRSEDERRASMECQLDVVEELI 298
The following BLAST results are available for this feature:
BLAST of Gchil7244.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3J3W0_9FLOR2.160e-6340.94Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 281..301
NoneNo IPR availableGENE3D3.10.20.90coord: 6..75
e-value: 2.7E-9
score: 38.9
NoneNo IPR availableGENE3D3.10.20.90coord: 135..221
e-value: 8.1E-11
score: 43.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 104..123
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 109..123
NoneNo IPR availablePANTHERPTHR10621:SF0AT15685P-RELATEDcoord: 151..219
NoneNo IPR availablePANTHERPTHR10621UV EXCISION REPAIR PROTEIN RAD23coord: 151..219
NoneNo IPR availableCDDcd17039Ubl_ubiquitin_likecoord: 19..73
e-value: 1.67819E-5
score: 40.2722
NoneNo IPR availableCDDcd17039Ubl_ubiquitin_likecoord: 146..214
e-value: 4.29568E-8
score: 47.591
IPR000626Ubiquitin-like domainSMARTSM00213ubq_7coord: 7..77
e-value: 1.3
score: 13.4
coord: 144..216
e-value: 7.4E-6
score: 35.5
IPR000626Ubiquitin-like domainPFAMPF00240ubiquitincoord: 151..215
e-value: 4.8E-8
score: 32.6
coord: 17..76
e-value: 4.4E-5
score: 23.1
IPR000626Ubiquitin-like domainPROSITEPS50053UBIQUITIN_2coord: 5..75
score: 11.137327
IPR000626Ubiquitin-like domainPROSITEPS50053UBIQUITIN_2coord: 151..213
score: 12.008343
IPR029071Ubiquitin-like domain superfamilySUPERFAMILY54236Ubiquitin-likecoord: 7..76
IPR029071Ubiquitin-like domain superfamilySUPERFAMILY54236Ubiquitin-likecoord: 145..218

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004441_piloncontigtig00004441_pilon:848334..849251 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7244.t1Gchil7244.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004441_pilon 848334..849251 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil7244.t1 ID=Gchil7244.t1|Name=Gchil7244.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=306bp
MDNHSDIGVVVIVGRNRWRLQISPSATFSHLRRLVEEKESTVEHGLRLIF
KGTSFPDSCALKDAAVADGAKMMAMRTSLQHQQERVEEKRALIAARQASL
AHMNRHASASDAAASSSAKVPSHANPARSAADCILGDERDDAVPSVFILH
RGQKYRLNVQMSDSVLSVKKNISSILRIESKPSDMRLVFNAKYLRDDVTL
QQVDAKNGSSFMVFFNASHHDAVEDKRQTELIERKLVLLEAKVKTLARQA
EHRLLDTVDLPLKKAELHGTVVYLRETLSLVKIYDDRRRVIEERIQAAEN
TLHHV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000626Ubiquitin-like_dom
IPR029071Ubiquitin-like_domsf