Gchil7142.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7142.t1
Unique NameGchil7142.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length189
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004441_piloncontigtig00004441_pilon:341127..341693 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog10228.TriadP59526
Preferred nameMAD2L2
PFAMsHORMA
Max annot lvl33208|Metazoa
KEGG koko:K13728
KEGG Pathwayko04110,ko04114,ko04914,ko05100,ko05131,map04110,map04114,map04914,map05100,map05131
KEGG ModuleM00293
GOsGO:0000018,GO:0000075,GO:0000122,GO:0000278,GO:0000724,GO:0000725,GO:0000731,GO:0001085,GO:0001102,GO:0001558,GO:0001932,GO:0001934,GO:0002637,GO:0002639,GO:0002682,GO:0002684,GO:0002694,GO:0002696,GO:0002697,GO:0002699,GO:0002700,GO:0002702,GO:0002703,GO:0002705,GO:0002706,GO:0002708,GO:0002712,GO:0002714,GO:0002819,GO:0002821,GO:0002822,GO:0002824,GO:0002889,GO:0002891,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0006139,GO:0006259,GO:0006281,GO:0006282,GO:0006301,GO:0006302,GO:0006310,GO:0006355,GO:0006357,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007010,GO:0007015,GO:0007049,GO:0007088,GO:0007093,GO:0007094,GO:0007154,GO:0007162,GO:0007165,GO:0007346,GO:0008134,GO:0008150,GO:0008152,GO:0008432,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009966,GO:0009968,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010562,GO:0010564,GO:0010569,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010639,GO:0010646,GO:0010648,GO:0010717,GO:0010719,GO:0010944,GO:0010948,GO:0010965,GO:0015630,GO:0016035,GO:0016043,GO:0016740,GO:0016772,GO:0016779,GO:0017125,GO:0018130,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019899,GO:0019900,GO:0019901,GO:0019985,GO:0022402,GO:0022407,GO:0022408,GO:0023051,GO:0023052,GO:0023057,GO:0030029,GO:0030036,GO:0030071,GO:0030111,GO:0030155,GO:0030178,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031401,GO:0031577,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032270,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0033135,GO:0033138,GO:0033554,GO:0033613,GO:0034641,GO:0034645,GO:0034654,GO:0035556,GO:0035861,GO:0040008,GO:0042176,GO:0042177,GO:0042276,GO:0042325,GO:0042327,GO:0042575,GO:0042770,GO:0042772,GO:0043085,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043392,GO:0043433,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0045191,GO:0045595,GO:0045596,GO:0045738,GO:0045739,GO:0045786,GO:0045830,GO:0045839,GO:0045841,GO:0045892,GO:0045893,GO:0045910,GO:0045911,GO:0045930,GO:0045934,GO:0045935,GO:0045937,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0050776,GO:0050778,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050864,GO:0050865,GO:0050867,GO:0050871,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051090,GO:0051093,GO:0051094,GO:0051098,GO:0051100,GO:0051101,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051239,GO:0051240,GO:0051241,GO:0051246,GO:0051247,GO:0051248,GO:0051249,GO:0051251,GO:0051252,GO:0051253,GO:0051254,GO:0051338,GO:0051339,GO:0051348,GO:0051349,GO:0051438,GO:0051444,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0060255,GO:0060828,GO:0061695,GO:0065007,GO:0065009,GO:0070013,GO:0071173,GO:0071174,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0080134,GO:0080135,GO:0090090,GO:0090304,GO:0090734,GO:0097435,GO:1901360,GO:1901362,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902099,GO:1902100,GO:1902494,GO:1902679,GO:1902680,GO:1903047,GO:1903320,GO:1903321,GO:1903506,GO:1903507,GO:1903508,GO:1904666,GO:1904667,GO:1905818,GO:1905819,GO:1990234,GO:2000026,GO:2000042,GO:2000047,GO:2000048,GO:2000112,GO:2000113,GO:2000677,GO:2000678,GO:2000779,GO:2000780,GO:2000781,GO:2000816,GO:2001020,GO:2001021,GO:2001022,GO:2001032,GO:2001034,GO:2001141,GO:2001251
Evalue2.48e-05
EggNOG OGsKOG3186@1|root,KOG3186@2759|Eukaryota,39SFK@33154|Opisthokonta,3BHZY@33208|Metazoa
Descriptionnegative regulation of ubiquitin protein ligase activity
COG categoryD
BRITEko00000,ko00001,ko00002,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7142Gchil7142Gracilaria chilensis NLEC103_M9 malegenetig00004441_pilon 341127..341693 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7142.t1.start1Gchil7142.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004441_pilon 341127..341129 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7142.t1.CDS1Gchil7142.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 341127..341693 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7142.t1.exon1Gchil7142.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 341127..341693 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7142.t1.stop1Gchil7142.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004441_pilon 341691..341693 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7142.t1Gchil7142.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004441_pilon 341127..341693 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7142.t1 ID=Gchil7142.t1|Name=Gchil7142.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=189bp
MFEMREKYGVGTFRSTHPRVNDYVARTMGALRGWLECDAVRSVAVVVLQG
EQHRVIARYTFETRVVARHAHDVSDVALAALDDALRAQLCRVLHHGAEEL
SLAAACSPAELQQQQQQRTFDVIVSTSGVHADARWMRASAREQHSVSSPV
LTVALKDADEVACTARVQSWLQLPSRASSSHARSTRDS*
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spliced messenger RNA

>Gchil7142.t1 ID=Gchil7142.t1|Name=Gchil7142.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=567bp|location=Sequence derived from alignment at tig00004441_pilon:341127..341693+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCGAGATGCGCGAAAAGTACGGTGTGGGCACGTTCCGTAGCACGCA
CCCGCGCGTGAATGACTATGTGGCGCGCACCATGGGCGCACTGCGCGGCT
GGCTGGAATGCGACGCCGTGCGCAGCGTGGCCGTCGTCGTGCTGCAGGGC
GAGCAGCACCGCGTGATTGCACGCTATACGTTCGAGACGCGCGTGGTTGC
GCGCCATGCGCATGACGTCTCTGACGTGGCACTAGCCGCATTGGACGACG
CGCTACGCGCTCAGCTGTGTCGCGTTCTGCATCATGGTGCCGAGGAACTC
AGCCTCGCCGCCGCTTGTTCTCCCGCCGAACTGCAACAACAGCAGCAGCA
GCGGACGTTCGACGTAATCGTGAGCACTAGCGGCGTGCACGCCGACGCGC
GCTGGATGCGCGCTAGCGCGCGAGAGCAACATAGCGTGTCGTCGCCTGTG
CTCACTGTGGCACTTAAGGACGCTGACGAAGTTGCGTGCACGGCGCGAGT
GCAGTCTTGGCTGCAGTTACCGTCGCGTGCGTCGTCGTCGCACGCGCGCT
CTACTAGAGATAGCTGA
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protein sequence of Gchil7142.t1

>Gchil7142.t1 ID=Gchil7142.t1|Name=Gchil7142.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=189bp
MFEMREKYGVGTFRSTHPRVNDYVARTMGALRGWLECDAVRSVAVVVLQG
EQHRVIARYTFETRVVARHAHDVSDVALAALDDALRAQLCRVLHHGAEEL
SLAAACSPAELQQQQQQRTFDVIVSTSGVHADARWMRASAREQHSVSSPV
LTVALKDADEVACTARVQSWLQLPSRASSSHARSTRDS*
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mRNA from alignment at tig00004441_pilon:341127..341693+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7142.t1 ID=Gchil7142.t1|Name=Gchil7142.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=567bp|location=Sequence derived from alignment at tig00004441_pilon:341127..341693+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTCGAGATGCGCGAAAAGTACGGTGTGGGCACGTTCCGTAGCACGCA
CCCGCGCGTGAATGACTATGTGGCGCGCACCATGGGCGCACTGCGCGGCT
GGCTGGAATGCGACGCCGTGCGCAGCGTGGCCGTCGTCGTGCTGCAGGGC
GAGCAGCACCGCGTGATTGCACGCTATACGTTCGAGACGCGCGTGGTTGC
GCGCCATGCGCATGACGTCTCTGACGTGGCACTAGCCGCATTGGACGACG
CGCTACGCGCTCAGCTGTGTCGCGTTCTGCATCATGGTGCCGAGGAACTC
AGCCTCGCCGCCGCTTGTTCTCCCGCCGAACTGCAACAACAGCAGCAGCA
GCGGACGTTCGACGTAATCGTGAGCACTAGCGGCGTGCACGCCGACGCGC
GCTGGATGCGCGCTAGCGCGCGAGAGCAACATAGCGTGTCGTCGCCTGTG
CTCACTGTGGCACTTAAGGACGCTGACGAAGTTGCGTGCACGGCGCGAGT
GCAGTCTTGGCTGCAGTTACCGTCGCGTGCGTCGTCGTCGCACGCGCGCT
CTACTAGAGATAGCTGA
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Coding sequence (CDS) from alignment at tig00004441_pilon:341127..341693+

>Gchil7142.t1 ID=Gchil7142.t1|Name=Gchil7142.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=567bp|location=Sequence derived from alignment at tig00004441_pilon:341127..341693+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTCGAGATGCGCGAAAAGTACGGTGTGGGCACGTTCCGTAGCACGCA
CCCGCGCGTGAATGACTATGTGGCGCGCACCATGGGCGCACTGCGCGGCT
GGCTGGAATGCGACGCCGTGCGCAGCGTGGCCGTCGTCGTGCTGCAGGGC
GAGCAGCACCGCGTGATTGCACGCTATACGTTCGAGACGCGCGTGGTTGC
GCGCCATGCGCATGACGTCTCTGACGTGGCACTAGCCGCATTGGACGACG
CGCTACGCGCTCAGCTGTGTCGCGTTCTGCATCATGGTGCCGAGGAACTC
AGCCTCGCCGCCGCTTGTTCTCCCGCCGAACTGCAACAACAGCAGCAGCA
GCGGACGTTCGACGTAATCGTGAGCACTAGCGGCGTGCACGCCGACGCGC
GCTGGATGCGCGCTAGCGCGCGAGAGCAACATAGCGTGTCGTCGCCTGTG
CTCACTGTGGCACTTAAGGACGCTGACGAAGTTGCGTGCACGGCGCGAGT
GCAGTCTTGGCTGCAGTTACCGTCGCGTGCGTCGTCGTCGCACGCGCGCT
CTACTAGAGATAGCTGA
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