Gchil7280.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7280.t1
Unique NameGchil7280.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length169
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004441_piloncontigtig00004441_pilon:943828..944334 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1547437.LL06_19690
PFAMsCupin_2
Max annot lvl28211|Alphaproteobacteria
Evalue8.77e-07
EggNOG OGsCOG0662@1|root,COG0662@2|Bacteria,1R1DU@1224|Proteobacteria,2TZ1H@28211|Alphaproteobacteria
DescriptionMannose-6-phosphate isomerase
COG categoryG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7280Gchil7280Gracilaria chilensis NLEC103_M9 malegenetig00004441_pilon 943828..944334 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7280.t1.stop1Gchil7280.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004441_pilon 943828..943830 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7280.t1.CDS1Gchil7280.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 943828..944334 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7280.t1.exon1Gchil7280.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 943828..944334 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7280.t1.start1Gchil7280.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004441_pilon 944332..944334 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7280.t1Gchil7280.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004441_pilon 943828..944334 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7280.t1 ID=Gchil7280.t1|Name=Gchil7280.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=169bp
MDRTSRSPFSLHTAASFALACLSIGMTSWSFRKSAPLHGGSVNVYNAWNG
VGMHAVPPLVLDSESSTNRTNWEIVRTAELQAGLERVEAGAWIPPHSHNT
EEIVLVYEGQGYVHFENGRKTAIQKGSMIHIVTGVHHAFQNAADQPMWLM
WCFPVLEKGEAFQFRQRY*
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spliced messenger RNA

>Gchil7280.t1 ID=Gchil7280.t1|Name=Gchil7280.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=507bp|location=Sequence derived from alignment at tig00004441_pilon:943828..944334- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCGCACCAGCCGCTCTCCTTTCTCTCTTCACACAGCCGCATCATT
TGCATTGGCCTGTTTGAGCATTGGAATGACGTCCTGGTCGTTTCGAAAAT
CTGCTCCTCTGCACGGTGGCTCTGTAAATGTTTACAACGCGTGGAACGGC
GTCGGAATGCACGCAGTGCCTCCGCTTGTCCTTGACTCCGAAAGTAGCAC
TAATAGAACCAACTGGGAGATAGTCCGGACAGCTGAGCTGCAGGCGGGGC
TTGAGCGCGTTGAGGCTGGTGCCTGGATTCCTCCGCATTCCCATAACACT
GAAGAGATTGTTCTTGTATATGAAGGACAAGGATATGTGCACTTTGAGAA
TGGTCGCAAAACTGCCATTCAGAAAGGTTCTATGATTCACATCGTTACTG
GCGTTCACCATGCGTTTCAAAATGCCGCAGACCAACCCATGTGGCTGATG
TGGTGCTTCCCAGTTCTAGAGAAGGGTGAAGCGTTCCAGTTTCGACAACG
ATATTAA
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protein sequence of Gchil7280.t1

>Gchil7280.t1 ID=Gchil7280.t1|Name=Gchil7280.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=169bp
MDRTSRSPFSLHTAASFALACLSIGMTSWSFRKSAPLHGGSVNVYNAWNG
VGMHAVPPLVLDSESSTNRTNWEIVRTAELQAGLERVEAGAWIPPHSHNT
EEIVLVYEGQGYVHFENGRKTAIQKGSMIHIVTGVHHAFQNAADQPMWLM
WCFPVLEKGEAFQFRQRY*
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mRNA from alignment at tig00004441_pilon:943828..944334-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7280.t1 ID=Gchil7280.t1|Name=Gchil7280.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=507bp|location=Sequence derived from alignment at tig00004441_pilon:943828..944334- (Gracilaria chilensis NLEC103_M9 male)
ATGGATCGCACCAGCCGCTCTCCTTTCTCTCTTCACACAGCCGCATCATT
TGCATTGGCCTGTTTGAGCATTGGAATGACGTCCTGGTCGTTTCGAAAAT
CTGCTCCTCTGCACGGTGGCTCTGTAAATGTTTACAACGCGTGGAACGGC
GTCGGAATGCACGCAGTGCCTCCGCTTGTCCTTGACTCCGAAAGTAGCAC
TAATAGAACCAACTGGGAGATAGTCCGGACAGCTGAGCTGCAGGCGGGGC
TTGAGCGCGTTGAGGCTGGTGCCTGGATTCCTCCGCATTCCCATAACACT
GAAGAGATTGTTCTTGTATATGAAGGACAAGGATATGTGCACTTTGAGAA
TGGTCGCAAAACTGCCATTCAGAAAGGTTCTATGATTCACATCGTTACTG
GCGTTCACCATGCGTTTCAAAATGCCGCAGACCAACCCATGTGGCTGATG
TGGTGCTTCCCAGTTCTAGAGAAGGGTGAAGCGTTCCAGTTTCGACAACG
ATATTAA
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Coding sequence (CDS) from alignment at tig00004441_pilon:943828..944334-

>Gchil7280.t1 ID=Gchil7280.t1|Name=Gchil7280.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=507bp|location=Sequence derived from alignment at tig00004441_pilon:943828..944334- (Gracilaria chilensis NLEC103_M9 male)
ATGGATCGCACCAGCCGCTCTCCTTTCTCTCTTCACACAGCCGCATCATT
TGCATTGGCCTGTTTGAGCATTGGAATGACGTCCTGGTCGTTTCGAAAAT
CTGCTCCTCTGCACGGTGGCTCTGTAAATGTTTACAACGCGTGGAACGGC
GTCGGAATGCACGCAGTGCCTCCGCTTGTCCTTGACTCCGAAAGTAGCAC
TAATAGAACCAACTGGGAGATAGTCCGGACAGCTGAGCTGCAGGCGGGGC
TTGAGCGCGTTGAGGCTGGTGCCTGGATTCCTCCGCATTCCCATAACACT
GAAGAGATTGTTCTTGTATATGAAGGACAAGGATATGTGCACTTTGAGAA
TGGTCGCAAAACTGCCATTCAGAAAGGTTCTATGATTCACATCGTTACTG
GCGTTCACCATGCGTTTCAAAATGCCGCAGACCAACCCATGTGGCTGATG
TGGTGCTTCCCAGTTCTAGAGAAGGGTGAAGCGTTCCAGTTTCGACAACG
ATATTAA
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