Gchil879.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil879.t1
Unique NameGchil879.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length496
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000017_piloncontigtig00000017_pilon:763485..764972 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMG018CT
Preferred nameNRT2.2
PFAMsMFS_1
Max annot lvl2759|Eukaryota
KEGG koko:K02575
KEGG TC2.A.1.8
KEGG Pathwayko00910,map00910
KEGG ModuleM00615
GOsGO:0000325,GO:0001101,GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005886,GO:0006810,GO:0006811,GO:0006820,GO:0007275,GO:0008150,GO:0008509,GO:0009507,GO:0009536,GO:0009628,GO:0009705,GO:0009791,GO:0009987,GO:0010035,GO:0010167,GO:0015075,GO:0015103,GO:0015112,GO:0015267,GO:0015291,GO:0015318,GO:0015513,GO:0015698,GO:0015706,GO:0015707,GO:0016020,GO:0022622,GO:0022803,GO:0022804,GO:0022832,GO:0022836,GO:0022857,GO:0031090,GO:0032501,GO:0032502,GO:0032991,GO:0034220,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0048364,GO:0048527,GO:0048528,GO:0048731,GO:0048856,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0055085,GO:0070887,GO:0071229,GO:0071241,GO:0071249,GO:0071705,GO:0071944,GO:0080167,GO:0090696,GO:0098588,GO:0098656,GO:0098805,GO:0099402,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902170,GO:1990351
Evalue3.64e-127
EggNOG OGsCOG2223@1|root,2QPIC@2759|Eukaryota
Descriptioncellular response to nitrate
COG categoryP
BRITEko00000,ko00001,ko00002,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil879Gchil879Gracilaria chilensis NLEC103_M9 malegenetig00000017_pilon 763485..764972 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil879.t1.start1Gchil879.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000017_pilon 763485..763487 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil879.t1.CDS1Gchil879.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000017_pilon 763485..764972 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil879.t1.exon1Gchil879.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000017_pilon 763485..764972 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil879.t1.stop1Gchil879.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000017_pilon 764970..764972 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil879.t1Gchil879.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000017_pilon 763485..764972 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil879.t1 ID=Gchil879.t1|Name=Gchil879.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=496bp
MASPDTATPPAEVPPVDEPKYQFALPVDEYGKAKVIRLYSFRRPHMRSFH
FAWFSFFLAFFGWFALAPLQEEIRKEGYIDGLVNGTPFKTQNIVSVLGTI
VMRLAIGPFCDRFGPRLAQSLLLSVFSLPVFLVATATKYWQWTTARFFIG
FIGASFVVTQFWTSIMFSGRIVGTANATSGGWGNLGGGVTNALMPLIKKG
MTKAAGGDKNRGWRLAMIFPGVALVLTSVAMFFLSDDLPQGNYKDLLKAG
KKEKTNPFIAMRKAACNWRVWILFLLYAGCFGVELVMNGNLAKYFETKTE
SFRLDQSTAGLIAGLFGLMNIFARSVGGILSDVLASKFGMRGRLWAFFIV
QLLEGIMFSVFSRIRVLGGAIPALIGFSMFVQMAEGCTFAVVPFVDPPIT
GAVAGIVGAGGNTGAVIGNALLDQGAQYGISNSFRTLGYIVIGSAFLIPL
LWWPQYGSMFTKPTISPKIVSDEPNEEEIAEEVEVDDGSAKATKS*
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spliced messenger RNA

>Gchil879.t1 ID=Gchil879.t1|Name=Gchil879.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1488bp|location=Sequence derived from alignment at tig00000017_pilon:763485..764972+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTCTCCCGATACTGCTACTCCGCCTGCCGAGGTGCCCCCGGTCGA
CGAGCCCAAGTACCAATTCGCCTTGCCTGTCGATGAATATGGCAAAGCAA
AGGTCATTCGTCTGTACAGTTTCAGACGCCCGCACATGCGCTCATTCCAC
TTTGCCTGGTTCTCGTTCTTCCTTGCTTTCTTCGGATGGTTTGCTCTAGC
TCCGCTTCAGGAAGAAATTCGTAAAGAAGGCTACATCGATGGCTTAGTTA
ATGGTACGCCCTTTAAGACTCAGAACATTGTGTCCGTGTTGGGAACGATT
GTTATGCGTCTTGCTATCGGTCCCTTCTGTGATCGATTTGGCCCACGTCT
CGCCCAGTCACTATTGCTCTCAGTTTTCTCTCTCCCGGTGTTCCTGGTAG
CCACTGCTACCAAGTACTGGCAGTGGACAACTGCTCGTTTCTTCATTGGA
TTTATCGGTGCTTCCTTCGTCGTCACTCAATTTTGGACTTCGATTATGTT
CTCTGGAAGGATCGTGGGTACGGCCAACGCTACCTCTGGTGGGTGGGGTA
ACCTTGGTGGTGGCGTAACCAATGCCCTTATGCCGCTTATTAAGAAGGGT
ATGACCAAGGCCGCCGGAGGTGACAAAAATCGCGGCTGGCGTCTGGCCAT
GATTTTCCCAGGTGTCGCCTTAGTTCTCACCTCAGTTGCTATGTTCTTCC
TATCTGATGATCTTCCACAAGGAAATTACAAAGATTTGCTCAAGGCCGGT
AAGAAGGAGAAGACCAACCCGTTCATCGCCATGAGGAAGGCTGCGTGCAA
CTGGAGGGTTTGGATCTTGTTTCTGTTATATGCCGGGTGTTTCGGTGTCG
AGCTTGTCATGAACGGAAACCTCGCCAAATATTTCGAAACAAAAACTGAA
TCCTTTCGACTTGACCAATCAACTGCTGGGTTGATAGCCGGATTGTTCGG
TCTGATGAATATCTTTGCGCGTTCTGTGGGCGGTATCCTTTCTGATGTGC
TCGCCTCTAAATTCGGAATGCGGGGACGTCTGTGGGCCTTCTTCATAGTG
CAATTGCTTGAGGGCATAATGTTCTCTGTGTTTTCCCGTATCCGCGTCTT
GGGAGGTGCCATCCCTGCCCTGATTGGCTTCTCCATGTTTGTGCAGATGG
CTGAGGGTTGCACATTCGCCGTCGTCCCGTTCGTTGACCCACCGATCACT
GGTGCCGTGGCCGGTATTGTCGGTGCAGGCGGTAACACTGGAGCTGTGAT
TGGTAACGCCCTTTTGGATCAAGGTGCACAGTACGGTATCTCTAATAGTT
TTCGCACCCTTGGATACATTGTAATTGGCTCTGCCTTTCTCATTCCGTTG
CTCTGGTGGCCGCAGTACGGTTCCATGTTCACCAAGCCGACTATATCTCC
GAAGATAGTAAGCGATGAGCCAAATGAGGAGGAAATTGCTGAGGAGGTGG
AAGTGGACGACGGGTCGGCCAAAGCCACCAAATCCTAA
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protein sequence of Gchil879.t1

>Gchil879.t1 ID=Gchil879.t1|Name=Gchil879.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=496bp
MASPDTATPPAEVPPVDEPKYQFALPVDEYGKAKVIRLYSFRRPHMRSFH
FAWFSFFLAFFGWFALAPLQEEIRKEGYIDGLVNGTPFKTQNIVSVLGTI
VMRLAIGPFCDRFGPRLAQSLLLSVFSLPVFLVATATKYWQWTTARFFIG
FIGASFVVTQFWTSIMFSGRIVGTANATSGGWGNLGGGVTNALMPLIKKG
MTKAAGGDKNRGWRLAMIFPGVALVLTSVAMFFLSDDLPQGNYKDLLKAG
KKEKTNPFIAMRKAACNWRVWILFLLYAGCFGVELVMNGNLAKYFETKTE
SFRLDQSTAGLIAGLFGLMNIFARSVGGILSDVLASKFGMRGRLWAFFIV
QLLEGIMFSVFSRIRVLGGAIPALIGFSMFVQMAEGCTFAVVPFVDPPIT
GAVAGIVGAGGNTGAVIGNALLDQGAQYGISNSFRTLGYIVIGSAFLIPL
LWWPQYGSMFTKPTISPKIVSDEPNEEEIAEEVEVDDGSAKATKS*
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mRNA from alignment at tig00000017_pilon:763485..764972+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil879.t1 ID=Gchil879.t1|Name=Gchil879.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1488bp|location=Sequence derived from alignment at tig00000017_pilon:763485..764972+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTTCTCCCGATACTGCTACTCCGCCTGCCGAGGTGCCCCCGGTCGA
CGAGCCCAAGTACCAATTCGCCTTGCCTGTCGATGAATATGGCAAAGCAA
AGGTCATTCGTCTGTACAGTTTCAGACGCCCGCACATGCGCTCATTCCAC
TTTGCCTGGTTCTCGTTCTTCCTTGCTTTCTTCGGATGGTTTGCTCTAGC
TCCGCTTCAGGAAGAAATTCGTAAAGAAGGCTACATCGATGGCTTAGTTA
ATGGTACGCCCTTTAAGACTCAGAACATTGTGTCCGTGTTGGGAACGATT
GTTATGCGTCTTGCTATCGGTCCCTTCTGTGATCGATTTGGCCCACGTCT
CGCCCAGTCACTATTGCTCTCAGTTTTCTCTCTCCCGGTGTTCCTGGTAG
CCACTGCTACCAAGTACTGGCAGTGGACAACTGCTCGTTTCTTCATTGGA
TTTATCGGTGCTTCCTTCGTCGTCACTCAATTTTGGACTTCGATTATGTT
CTCTGGAAGGATCGTGGGTACGGCCAACGCTACCTCTGGTGGGTGGGGTA
ACCTTGGTGGTGGCGTAACCAATGCCCTTATGCCGCTTATTAAGAAGGGT
ATGACCAAGGCCGCCGGAGGTGACAAAAATCGCGGCTGGCGTCTGGCCAT
GATTTTCCCAGGTGTCGCCTTAGTTCTCACCTCAGTTGCTATGTTCTTCC
TATCTGATGATCTTCCACAAGGAAATTACAAAGATTTGCTCAAGGCCGGT
AAGAAGGAGAAGACCAACCCGTTCATCGCCATGAGGAAGGCTGCGTGCAA
CTGGAGGGTTTGGATCTTGTTTCTGTTATATGCCGGGTGTTTCGGTGTCG
AGCTTGTCATGAACGGAAACCTCGCCAAATATTTCGAAACAAAAACTGAA
TCCTTTCGACTTGACCAATCAACTGCTGGGTTGATAGCCGGATTGTTCGG
TCTGATGAATATCTTTGCGCGTTCTGTGGGCGGTATCCTTTCTGATGTGC
TCGCCTCTAAATTCGGAATGCGGGGACGTCTGTGGGCCTTCTTCATAGTG
CAATTGCTTGAGGGCATAATGTTCTCTGTGTTTTCCCGTATCCGCGTCTT
GGGAGGTGCCATCCCTGCCCTGATTGGCTTCTCCATGTTTGTGCAGATGG
CTGAGGGTTGCACATTCGCCGTCGTCCCGTTCGTTGACCCACCGATCACT
GGTGCCGTGGCCGGTATTGTCGGTGCAGGCGGTAACACTGGAGCTGTGAT
TGGTAACGCCCTTTTGGATCAAGGTGCACAGTACGGTATCTCTAATAGTT
TTCGCACCCTTGGATACATTGTAATTGGCTCTGCCTTTCTCATTCCGTTG
CTCTGGTGGCCGCAGTACGGTTCCATGTTCACCAAGCCGACTATATCTCC
GAAGATAGTAAGCGATGAGCCAAATGAGGAGGAAATTGCTGAGGAGGTGG
AAGTGGACGACGGGTCGGCCAAAGCCACCAAATCCTAA
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Coding sequence (CDS) from alignment at tig00000017_pilon:763485..764972+

>Gchil879.t1 ID=Gchil879.t1|Name=Gchil879.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1488bp|location=Sequence derived from alignment at tig00000017_pilon:763485..764972+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTTCTCCCGATACTGCTACTCCGCCTGCCGAGGTGCCCCCGGTCGA
CGAGCCCAAGTACCAATTCGCCTTGCCTGTCGATGAATATGGCAAAGCAA
AGGTCATTCGTCTGTACAGTTTCAGACGCCCGCACATGCGCTCATTCCAC
TTTGCCTGGTTCTCGTTCTTCCTTGCTTTCTTCGGATGGTTTGCTCTAGC
TCCGCTTCAGGAAGAAATTCGTAAAGAAGGCTACATCGATGGCTTAGTTA
ATGGTACGCCCTTTAAGACTCAGAACATTGTGTCCGTGTTGGGAACGATT
GTTATGCGTCTTGCTATCGGTCCCTTCTGTGATCGATTTGGCCCACGTCT
CGCCCAGTCACTATTGCTCTCAGTTTTCTCTCTCCCGGTGTTCCTGGTAG
CCACTGCTACCAAGTACTGGCAGTGGACAACTGCTCGTTTCTTCATTGGA
TTTATCGGTGCTTCCTTCGTCGTCACTCAATTTTGGACTTCGATTATGTT
CTCTGGAAGGATCGTGGGTACGGCCAACGCTACCTCTGGTGGGTGGGGTA
ACCTTGGTGGTGGCGTAACCAATGCCCTTATGCCGCTTATTAAGAAGGGT
ATGACCAAGGCCGCCGGAGGTGACAAAAATCGCGGCTGGCGTCTGGCCAT
GATTTTCCCAGGTGTCGCCTTAGTTCTCACCTCAGTTGCTATGTTCTTCC
TATCTGATGATCTTCCACAAGGAAATTACAAAGATTTGCTCAAGGCCGGT
AAGAAGGAGAAGACCAACCCGTTCATCGCCATGAGGAAGGCTGCGTGCAA
CTGGAGGGTTTGGATCTTGTTTCTGTTATATGCCGGGTGTTTCGGTGTCG
AGCTTGTCATGAACGGAAACCTCGCCAAATATTTCGAAACAAAAACTGAA
TCCTTTCGACTTGACCAATCAACTGCTGGGTTGATAGCCGGATTGTTCGG
TCTGATGAATATCTTTGCGCGTTCTGTGGGCGGTATCCTTTCTGATGTGC
TCGCCTCTAAATTCGGAATGCGGGGACGTCTGTGGGCCTTCTTCATAGTG
CAATTGCTTGAGGGCATAATGTTCTCTGTGTTTTCCCGTATCCGCGTCTT
GGGAGGTGCCATCCCTGCCCTGATTGGCTTCTCCATGTTTGTGCAGATGG
CTGAGGGTTGCACATTCGCCGTCGTCCCGTTCGTTGACCCACCGATCACT
GGTGCCGTGGCCGGTATTGTCGGTGCAGGCGGTAACACTGGAGCTGTGAT
TGGTAACGCCCTTTTGGATCAAGGTGCACAGTACGGTATCTCTAATAGTT
TTCGCACCCTTGGATACATTGTAATTGGCTCTGCCTTTCTCATTCCGTTG
CTCTGGTGGCCGCAGTACGGTTCCATGTTCACCAAGCCGACTATATCTCC
GAAGATAGTAAGCGATGAGCCAAATGAGGAGGAAATTGCTGAGGAGGTGG
AAGTGGACGACGGGTCGGCCAAAGCCACCAAATCCTAA
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