Gchil7297.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7297.t1
Unique NameGchil7297.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length182
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004441_piloncontigtig00004441_pilon:982799..983430 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog192875.XP_004343578.1
Preferred nameNDUFAF3
PFAMsDUF498
Max annot lvl33154|Opisthokonta
KEGG koko:K09008
KEGG Pathwayko04714,map04714
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006996,GO:0007005,GO:0008150,GO:0009987,GO:0010257,GO:0016020,GO:0016043,GO:0019866,GO:0022607,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032981,GO:0033108,GO:0034622,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0065003,GO:0071840
Evalue1.91e-21
EggNOG OGsKOG3363@1|root,KOG3363@2759|Eukaryota,3A05D@33154|Opisthokonta
Descriptionmitochondrial respiratory chain complex I assembly
COG categoryS
BRITEko00000,ko00001,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7297Gchil7297Gracilaria chilensis NLEC103_M9 malegenetig00004441_pilon 982799..983430 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7297.t1Gchil7297.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004441_pilon 982799..983430 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7297.t1.start1Gchil7297.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004441_pilon 982799..982801 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7297.t1.CDS1Gchil7297.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 982799..983176 +
Gchil7297.t1.CDS2Gchil7297.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 983263..983430 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7297.t1.exon1Gchil7297.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 982799..983176 +
Gchil7297.t1.exon2Gchil7297.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 983263..983430 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7297.t1.intron1Gchil7297.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004441_pilon 983177..983262 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7297.t1.stop1Gchil7297.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004441_pilon 983428..983430 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7297.t1 ID=Gchil7297.t1|Name=Gchil7297.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=182bp
MIRSSIFLRLLHSQKKRNFCSKSEAPLASESSKRPTTAPFDSLGYELINT
STEPQAVQRAVIDSIGTTSFTVSGVRVYGSVIIMPFFSTVWNVDSIHQVS
PSSFALVKLIVPRPDIMLVGTGAVSLPLSADVMKFFKDIRVNVEAMDTKN
ACHTFNVLNQEDRSVAAALFPIAYNENETDK*
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spliced messenger RNA

>Gchil7297.t1 ID=Gchil7297.t1|Name=Gchil7297.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=546bp|location=Sequence derived from alignment at tig00004441_pilon:982799..983430+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTAGATCAAGCATCTTTTTGCGTCTGCTTCACAGCCAGAAGAAACG
GAATTTTTGCTCAAAATCGGAGGCGCCGCTTGCCTCGGAATCTTCGAAAC
GGCCGACCACAGCACCATTTGATTCCCTTGGATATGAGCTTATAAACACT
AGTACCGAACCACAGGCTGTTCAACGAGCTGTGATTGACTCGATTGGAAC
TACGTCCTTCACAGTCAGTGGTGTTCGCGTTTACGGATCGGTGATTATCA
TGCCTTTTTTTTCTACTGTTTGGAATGTAGACAGCATTCACCAAGTCTCG
CCAAGTTCATTTGCGTTGGTTAAACTTATCGTGCCGCGCCCAGACATAAT
GCTTGTTGGGACTGGAGCTGTATCACTTCCTCTCTCGGCCGATGTTATGA
AGTTCTTCAAAGATATACGTGTTAATGTGGAAGCAATGGACACGAAGAAC
GCTTGCCACACTTTTAATGTGTTAAACCAAGAGGACAGAAGCGTTGCAGC
CGCTTTGTTTCCCATCGCTTATAATGAAAATGAGACAGACAAATAG
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protein sequence of Gchil7297.t1

>Gchil7297.t1 ID=Gchil7297.t1|Name=Gchil7297.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=182bp
MIRSSIFLRLLHSQKKRNFCSKSEAPLASESSKRPTTAPFDSLGYELINT
STEPQAVQRAVIDSIGTTSFTVSGVRVYGSVIIMPFFSTVWNVDSIHQVS
PSSFALVKLIVPRPDIMLVGTGAVSLPLSADVMKFFKDIRVNVEAMDTKN
ACHTFNVLNQEDRSVAAALFPIAYNENETDK*
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mRNA from alignment at tig00004441_pilon:982799..983430+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7297.t1 ID=Gchil7297.t1|Name=Gchil7297.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=632bp|location=Sequence derived from alignment at tig00004441_pilon:982799..983430+ (Gracilaria chilensis NLEC103_M9 male)
ATGATTAGATCAAGCATCTTTTTGCGTCTGCTTCACAGCCAGAAGAAACG
GAATTTTTGCTCAAAATCGGAGGCGCCGCTTGCCTCGGAATCTTCGAAAC
GGCCGACCACAGCACCATTTGATTCCCTTGGATATGAGCTTATAAACACT
AGTACCGAACCACAGGCTGTTCAACGAGCTGTGATTGACTCGATTGGAAC
TACGTCCTTCACAGTCAGTGGTGTTCGCGTTTACGGATCGGTGATTATCA
TGCCTTTTTTTTCTACTGTTTGGAATGTAGACAGCATTCACCAAGTCTCG
CCAAGTTCATTTGCGTTGGTTAAACTTATCGTGCCGCGCCCAGACATAAT
GCTTGTTGGGACTGGAGCTGTATCACTTGTATGTTCACTATTTTCAAAAT
GATGAGTATTGCACGCATTCTACTGACTGCCATTTTCCTTGATCTGGCCA
TTAAACCTTTTCAGCCTCTCTCGGCCGATGTTATGAAGTTCTTCAAAGAT
ATACGTGTTAATGTGGAAGCAATGGACACGAAGAACGCTTGCCACACTTT
TAATGTGTTAAACCAAGAGGACAGAAGCGTTGCAGCCGCTTTGTTTCCCA
TCGCTTATAATGAAAATGAGACAGACAAATAG
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Coding sequence (CDS) from alignment at tig00004441_pilon:982799..983430+

>Gchil7297.t1 ID=Gchil7297.t1|Name=Gchil7297.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=546bp|location=Sequence derived from alignment at tig00004441_pilon:982799..983430+ (Gracilaria chilensis NLEC103_M9 male)
ATGATTAGATCAAGCATCTTTTTGCGTCTGCTTCACAGCCAGAAGAAACG
GAATTTTTGCTCAAAATCGGAGGCGCCGCTTGCCTCGGAATCTTCGAAAC
GGCCGACCACAGCACCATTTGATTCCCTTGGATATGAGCTTATAAACACT
AGTACCGAACCACAGGCTGTTCAACGAGCTGTGATTGACTCGATTGGAAC
TACGTCCTTCACAGTCAGTGGTGTTCGCGTTTACGGATCGGTGATTATCA
TGCCTTTTTTTTCTACTGTTTGGAATGTAGACAGCATTCACCAAGTCTCG
CCAAGTTCATTTGCGTTGGTTAAACTTATCGTGCCGCGCCCAGACATAAT
GCTTGTTGGGACTGGAGCTGTATCACTTCCTCTCTCGGCCGATGTTATGA
AGTTCTTCAAAGATATACGTGTTAATGTGGAAGCAATGGACACGAAGAAC
GCTTGCCACACTTTTAATGTGTTAAACCAAGAGGACAGAAGCGTTGCAGC
CGCTTTGTTTCCCATCGCTTATAATGAAAATGAGACAGACAAATAG
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