Gchil1889.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1889.t1
Unique NameGchil1889.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length254
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004439_piloncontigtig00004439_pilon:972946..973707 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2903.EOD36858
PFAMsMito_carr
Max annot lvl2759|Eukaryota
Evalue2.21e-62
EggNOG OGs28MPG@1|root,2QU7F@2759|Eukaryota
DescriptionMitochondrial carrier protein
COG categoryU
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1889Gchil1889Gracilaria chilensis NLEC103_M9 malegenetig00004439_pilon 972946..973707 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1889.t1.stop1Gchil1889.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004439_pilon 972946..972948 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1889.t1.CDS1Gchil1889.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 972946..973707 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1889.t1.exon1Gchil1889.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 972946..973707 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1889.t1.start1Gchil1889.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004439_pilon 973705..973707 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1889.t1Gchil1889.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004439_pilon 972946..973707 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1889.t1 ID=Gchil1889.t1|Name=Gchil1889.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=254bp
MWLSTTAAFQYRSGVSLRQALRLLYAQGGVKRFYSGLAPTVMHVTLCRFG
DTTANNFALTLAPTDSLPLNTLCASFAAAAWRATLLPLETVRSNMQVRGP
DGLSAVVDRFRNAGFAGLYRGSAASFSAGLVGHFPFFFTVNIVSQAVPLT
EDASILAKIGRNGGMGFLAAMSADIFTNGFKVVATNKQTCDKGLSYYEVA
RKIVKRDGIFSIVTRGLKTRMIANGLQGATFVLLWKEIESRLVRTRFNPS
AEP*
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spliced messenger RNA

>Gchil1889.t1 ID=Gchil1889.t1|Name=Gchil1889.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=762bp|location=Sequence derived from alignment at tig00004439_pilon:972946..973707- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGCTCTCCACCACCGCCGCCTTCCAGTACCGCTCTGGCGTCTCGCT
CCGTCAGGCGTTGCGTCTCTTGTACGCACAGGGTGGCGTCAAACGCTTCT
ACTCCGGTTTGGCTCCCACTGTCATGCACGTCACTTTGTGTCGTTTCGGT
GATACCACCGCCAACAATTTCGCCCTCACGCTTGCGCCTACCGACAGCCT
GCCGCTCAACACGCTGTGTGCTAGCTTTGCCGCCGCCGCTTGGAGGGCCA
CTCTCTTGCCGCTTGAGACAGTTCGCTCTAACATGCAGGTTAGGGGGCCG
GATGGACTCTCCGCCGTCGTCGATCGTTTTCGCAATGCAGGCTTCGCCGG
CTTGTATCGCGGCAGTGCCGCCAGTTTTTCTGCCGGATTGGTGGGCCACT
TTCCGTTTTTCTTCACCGTTAATATTGTTTCCCAAGCAGTTCCGCTCACA
GAAGATGCTTCAATCCTTGCTAAAATAGGTCGCAACGGCGGCATGGGCTT
CCTAGCTGCCATGTCGGCCGATATATTCACTAATGGTTTTAAGGTTGTTG
CCACCAACAAGCAAACTTGTGACAAGGGTCTATCATATTACGAAGTGGCC
CGTAAGATCGTTAAGAGAGATGGTATCTTCTCCATTGTTACACGCGGCCT
CAAGACCAGAATGATCGCCAATGGCTTGCAGGGAGCTACTTTTGTTCTGC
TGTGGAAGGAGATCGAGTCCCGTCTCGTGCGAACAAGATTTAATCCCTCT
GCCGAGCCGTAA
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protein sequence of Gchil1889.t1

>Gchil1889.t1 ID=Gchil1889.t1|Name=Gchil1889.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=254bp
MWLSTTAAFQYRSGVSLRQALRLLYAQGGVKRFYSGLAPTVMHVTLCRFG
DTTANNFALTLAPTDSLPLNTLCASFAAAAWRATLLPLETVRSNMQVRGP
DGLSAVVDRFRNAGFAGLYRGSAASFSAGLVGHFPFFFTVNIVSQAVPLT
EDASILAKIGRNGGMGFLAAMSADIFTNGFKVVATNKQTCDKGLSYYEVA
RKIVKRDGIFSIVTRGLKTRMIANGLQGATFVLLWKEIESRLVRTRFNPS
AEP*
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mRNA from alignment at tig00004439_pilon:972946..973707-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1889.t1 ID=Gchil1889.t1|Name=Gchil1889.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=762bp|location=Sequence derived from alignment at tig00004439_pilon:972946..973707- (Gracilaria chilensis NLEC103_M9 male)
ATGTGGCTCTCCACCACCGCCGCCTTCCAGTACCGCTCTGGCGTCTCGCT
CCGTCAGGCGTTGCGTCTCTTGTACGCACAGGGTGGCGTCAAACGCTTCT
ACTCCGGTTTGGCTCCCACTGTCATGCACGTCACTTTGTGTCGTTTCGGT
GATACCACCGCCAACAATTTCGCCCTCACGCTTGCGCCTACCGACAGCCT
GCCGCTCAACACGCTGTGTGCTAGCTTTGCCGCCGCCGCTTGGAGGGCCA
CTCTCTTGCCGCTTGAGACAGTTCGCTCTAACATGCAGGTTAGGGGGCCG
GATGGACTCTCCGCCGTCGTCGATCGTTTTCGCAATGCAGGCTTCGCCGG
CTTGTATCGCGGCAGTGCCGCCAGTTTTTCTGCCGGATTGGTGGGCCACT
TTCCGTTTTTCTTCACCGTTAATATTGTTTCCCAAGCAGTTCCGCTCACA
GAAGATGCTTCAATCCTTGCTAAAATAGGTCGCAACGGCGGCATGGGCTT
CCTAGCTGCCATGTCGGCCGATATATTCACTAATGGTTTTAAGGTTGTTG
CCACCAACAAGCAAACTTGTGACAAGGGTCTATCATATTACGAAGTGGCC
CGTAAGATCGTTAAGAGAGATGGTATCTTCTCCATTGTTACACGCGGCCT
CAAGACCAGAATGATCGCCAATGGCTTGCAGGGAGCTACTTTTGTTCTGC
TGTGGAAGGAGATCGAGTCCCGTCTCGTGCGAACAAGATTTAATCCCTCT
GCCGAGCCGTAA
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Coding sequence (CDS) from alignment at tig00004439_pilon:972946..973707-

>Gchil1889.t1 ID=Gchil1889.t1|Name=Gchil1889.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=762bp|location=Sequence derived from alignment at tig00004439_pilon:972946..973707- (Gracilaria chilensis NLEC103_M9 male)
ATGTGGCTCTCCACCACCGCCGCCTTCCAGTACCGCTCTGGCGTCTCGCT
CCGTCAGGCGTTGCGTCTCTTGTACGCACAGGGTGGCGTCAAACGCTTCT
ACTCCGGTTTGGCTCCCACTGTCATGCACGTCACTTTGTGTCGTTTCGGT
GATACCACCGCCAACAATTTCGCCCTCACGCTTGCGCCTACCGACAGCCT
GCCGCTCAACACGCTGTGTGCTAGCTTTGCCGCCGCCGCTTGGAGGGCCA
CTCTCTTGCCGCTTGAGACAGTTCGCTCTAACATGCAGGTTAGGGGGCCG
GATGGACTCTCCGCCGTCGTCGATCGTTTTCGCAATGCAGGCTTCGCCGG
CTTGTATCGCGGCAGTGCCGCCAGTTTTTCTGCCGGATTGGTGGGCCACT
TTCCGTTTTTCTTCACCGTTAATATTGTTTCCCAAGCAGTTCCGCTCACA
GAAGATGCTTCAATCCTTGCTAAAATAGGTCGCAACGGCGGCATGGGCTT
CCTAGCTGCCATGTCGGCCGATATATTCACTAATGGTTTTAAGGTTGTTG
CCACCAACAAGCAAACTTGTGACAAGGGTCTATCATATTACGAAGTGGCC
CGTAAGATCGTTAAGAGAGATGGTATCTTCTCCATTGTTACACGCGGCCT
CAAGACCAGAATGATCGCCAATGGCTTGCAGGGAGCTACTTTTGTTCTGC
TGTGGAAGGAGATCGAGTCCCGTCTCGTGCGAACAAGATTTAATCCCTCT
GCCGAGCCGTAA
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