Gchil1920.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1920.t1
Unique NameGchil1920.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length849
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004439_piloncontigtig00004439_pilon:1186945..1189491 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1920Gchil1920Gracilaria chilensis NLEC103_M9 malegenetig00004439_pilon 1186945..1189491 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1920.t1.start1Gchil1920.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004439_pilon 1186945..1186947 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1920.t1.CDS1Gchil1920.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1186945..1189491 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1920.t1.exon1Gchil1920.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1186945..1189491 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1920.t1.stop1Gchil1920.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004439_pilon 1189489..1189491 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1920.t1Gchil1920.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004439_pilon 1186945..1189491 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1920.t1 ID=Gchil1920.t1|Name=Gchil1920.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=849bp
MQPADTIASQHAAALAAVNLKEMQPAHTAPMPAPAAPMPAPAPLPAAQPP
PPPPPPSPLAVKSDPSAPTWVISRDPSPRSTFSPPRSDLELRHAAPFSHA
RPFLNPEQSSPPPLVDNVKPVSAALSRKRPFESTDTPLVKRKKVKKNNNK
ADKAENNVAKQTPGPIFRKSSALLLSHSYLLRDPHVEDALKEFLFPIIMA
ENGARPKWAACVLCLSHTRGKGHIYFQSFPLKMRKIRNHLASLHAKLDAD
NYVQLNVDEKLAFLRRDLPPFNAVTNHPLLRNLEDSPSWNEAEYNRVFHS
DSSAAQLASYSSPLADKVPAKQVTPAVRSAKRHKKEAALRKVLTRAFNHP
KQMRHLPKMFCSDGEDLRASPSHSLCLDDPDITCGRRNFTQGMTMNVTHV
LDSRNRKLNCSHEFDNLRHVLQNAKPLSHPEIPRLVLGDKLRDPLREKLA
TADDAFLTLTASMPPGGENTTAAKRVDVQYFTPVSALILFYLMRGVPCSV
ITELVDAMLQEEENVGKSRTGTMLPSVVLTGDSVCAVNMQLTRLLLDEKN
RYSWALTFLTRPCPELGEDGVEVLVATRNEKMVRSDLHVVSLRYADRIDE
SIVAFFDAICADWKSRLVGLNSGIDVADAKRKQVERTIFEVLKAVEGVGN
VLLIDKEVGRSGRPIFADVVGKMSEEEMSRLVDSHLKRLGQSMSKNEILN
AWRTLAIDERVEHAYSPHADCEENNVEYVENRGIRNFVDDWAPFETLRNF
AYSLRPLYERYEIGADQIGCFRAGVICGTKGNISSMVDAGLERVFHARSL
VKAWCMMVMTEKGENGKCKWAKNGCMWSENWVNVVREVYGGDALVGAG*
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spliced messenger RNA

>Gchil1920.t1 ID=Gchil1920.t1|Name=Gchil1920.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2547bp|location=Sequence derived from alignment at tig00004439_pilon:1186945..1189491+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCCGGCAGACACTATCGCGTCGCAGCACGCGGCTGCTCTCGCCGC
TGTCAACCTCAAGGAGATGCAACCTGCGCACAcagcgcctatgccagcgc
ccgccgcgccaatgccagcacccgcgccattgccagctgcacagccaccg
ccgccgccgccgccgccgtcgccgctcgcAGTCAAGAGCGACCCTTCTGC
CCCTACGTGGGTCATTTCAAGAGATCCTTCTCCGCGTAGTACTTTTTCAC
CTCCACGCAGCGATCTTGAGCTTCGCCACGCGGCCCCTTTTTCGCACGCC
CGACCCTTCCTGAACCCCGAGCAGAGCTCCCCGCCTCCGCTTGTAGACAA
TGTAAAGCCTGTTTCTGCCGCTTTATCCAGGAAGCGGCCCTTTGAAAGCA
CCGACACGCCGCTGGTAAAGCGGAAGAAAGTGAAGAAAAACAACAACAAA
GCGGACAAGGCTGAAAACAATGTTGCGAAACAAACCCCCGGCCCAATCTT
CCGCAAATCTTCCGCTTTGCTCTTGTCGCACTCATATCTTTTGCGCGACC
CCCATGTCGAAGACGCTCTGAAAGAGTTTCTGTTCCCCATCATCATGGCG
GAAAATGGCGCACGGCCGAAGTGGGCCGCTTGCGTGTTGTGCCTTTCCCA
CACCCGCGGCAAGGGGCATATTTACTTTCAGAGCTTCCCACTCAAGATGC
GCAAAATCCGCAATCATCTTGCATCTCTCCACGCCAAGCTAGACGCTGAT
AATTATGTTCAACTCAACGTTGATGAGAAGCTAGCTTTTCTAAGGCGCGA
CCTTCCTCCTTTCAATGCCGTCACAAATCATCCACTCTTACGCAATTTAG
AGGACTCTCCCTCGTGGAATGAAGCCGAATACAATCGCGTCTTCCACTCC
GATTCTTCGGCAGCACAACTCGCTTCCTATTCCTCGCCGCTTGCTGATAA
GGTGCCAGCCAAACAAGTTACACCAGCCGTGCGATCGGCCAAACGGCACA
AAAAAGAAGCCGCGCTCAGGAAGGTGTTGACGCGAGCCTTCAATCACCCA
AAACAGATGCGACATCTGCCCAAAATGTTCTGCTCGGACGGTGAAGATCT
GCGCGCTTCGCCATCCCACTCTTTATGCCTCGATGATCCTGATATTACGT
GCGGACGGCGAAACTTTACTCAAGGTATGACCATGAACGTGACTCATGTT
CTTGATTCGCGAAATAGAAAGCTGAATTGCTCCCATGAATTTGACAATCT
CCGCCACGTCCTTCAAAATGCTAAACCCTTGTCTCACCCGGAAATACCGC
GTTTGGTTTTAGGTGACAAGCTCAGGGACCCATTGCGCGAAAAGTTGGCC
ACAGCTGATGACGCATTTCTCACATTAACTGCGTCCATGCCGCCCGGTGG
TGAAAACACTACAGCCGCAAAGAGGGTAGATGTGCAGTATTTCACGCCTG
TGTCTGCACTGATTTTGTTTTACTTAATGCGTGGCGTTCCTTGTTCTGTG
ATTACAGAGCTTGTGGATGCGATGTTGCAAGAAGAAGAAAACGTTGGGAA
GAGTAGGACTGGAACCATGTTGCCATCGGTTGTACTAACTGGAGACTCCG
TGTGTGCTGTGAACATGCAATTGACGAGATTGTTGCTCGACGAAAAGAAT
CGGTATAGCTGGGCTCTGACGTTCCTGACACGCCCGTGTCCAGAACTCGG
TGAGGATGGTGTGGAAGTCTTGGTTGCTACGAGAAATGAGAAGATGGTTC
GAAGTGATTTACATGTTGTGTCTTTGCGTTATGCAGATCGCATTGATGAG
AGCATAGTGGCGTTCTTCGATGCGATTTGCGCTGATTGGAAGTCACGTTT
GGTGGGGCTTAATTCCGGAATTGACGTCGCTGACGCGAAACGAAAACAGG
TTGAGCGGACGATTTTTGAGGTGTTGAAGGCAGTTGAAGGGGTCGGGAAT
GTGCTGCTGATTGACAAGGAAGTGGGTAGAAGTGGGCGACCCATCTTTGC
AGATGTGGTCGGAAAGATGAGTGAGGAAGAGATGTCACGACTGGTGGATA
GTCATTTGAAACGGTTAGGGCAAAGCATGAGCAAAAACGAGATACTCAAT
GCTTGGCGTACACTTGCTATCGATGAACGTGTGGAGCATGCTTACAGTCC
TCACGCTGATTGTGAAGAAAACAACGTGGAATATGTTGAAAACCGTGGAA
TACGAAATTTCGTTGATGATTGGGCTCCGTTTGAGACTCTAAGAAACTTT
GCGTACAGTTTGAGACCTTTGTATGAGCGATATGAGATTGGAGCGGATCA
GATTGGATGCTTCCGAGCAGGAGTGATCTGTGGTACGAAAGGTAATATCA
GTTCGATGGTGGACGCTGGATTGGAACGCGTGTTCCACGCCAGATCGCTT
GTGAAGGCGTGGTGTATGATGGTGATGACTGAGAAGGGTGAGAATGGCAA
GTGCAAATGGGCGAAGAACGGATGCATGTGGTCGGAAAACTGGGTGAACG
TTGTTCGCGAGGTGTATGGAGGGGATGCGCTGGTTGGGGCTGGTTGA
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protein sequence of Gchil1920.t1

>Gchil1920.t1 ID=Gchil1920.t1|Name=Gchil1920.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=849bp
MQPADTIASQHAAALAAVNLKEMQPAHTAPMPAPAAPMPAPAPLPAAQPP
PPPPPPSPLAVKSDPSAPTWVISRDPSPRSTFSPPRSDLELRHAAPFSHA
RPFLNPEQSSPPPLVDNVKPVSAALSRKRPFESTDTPLVKRKKVKKNNNK
ADKAENNVAKQTPGPIFRKSSALLLSHSYLLRDPHVEDALKEFLFPIIMA
ENGARPKWAACVLCLSHTRGKGHIYFQSFPLKMRKIRNHLASLHAKLDAD
NYVQLNVDEKLAFLRRDLPPFNAVTNHPLLRNLEDSPSWNEAEYNRVFHS
DSSAAQLASYSSPLADKVPAKQVTPAVRSAKRHKKEAALRKVLTRAFNHP
KQMRHLPKMFCSDGEDLRASPSHSLCLDDPDITCGRRNFTQGMTMNVTHV
LDSRNRKLNCSHEFDNLRHVLQNAKPLSHPEIPRLVLGDKLRDPLREKLA
TADDAFLTLTASMPPGGENTTAAKRVDVQYFTPVSALILFYLMRGVPCSV
ITELVDAMLQEEENVGKSRTGTMLPSVVLTGDSVCAVNMQLTRLLLDEKN
RYSWALTFLTRPCPELGEDGVEVLVATRNEKMVRSDLHVVSLRYADRIDE
SIVAFFDAICADWKSRLVGLNSGIDVADAKRKQVERTIFEVLKAVEGVGN
VLLIDKEVGRSGRPIFADVVGKMSEEEMSRLVDSHLKRLGQSMSKNEILN
AWRTLAIDERVEHAYSPHADCEENNVEYVENRGIRNFVDDWAPFETLRNF
AYSLRPLYERYEIGADQIGCFRAGVICGTKGNISSMVDAGLERVFHARSL
VKAWCMMVMTEKGENGKCKWAKNGCMWSENWVNVVREVYGGDALVGAG*
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mRNA from alignment at tig00004439_pilon:1186945..1189491+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1920.t1 ID=Gchil1920.t1|Name=Gchil1920.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2547bp|location=Sequence derived from alignment at tig00004439_pilon:1186945..1189491+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAGCCGGCAGACACTATCGCGTCGCAGCACGCGGCTGCTCTCGCCGC TGTCAACCTCAAGGAGATGCAACCTGCGCACAcagcgcctatgccagcgc ccgccgcgccaatgccagcacccgcgccattgccagctgcacagccaccg ccgccgccgccgccgccgtcgccgctcgcAGTCAAGAGCGACCCTTCTGC CCCTACGTGGGTCATTTCAAGAGATCCTTCTCCGCGTAGTACTTTTTCAC CTCCACGCAGCGATCTTGAGCTTCGCCACGCGGCCCCTTTTTCGCACGCC CGACCCTTCCTGAACCCCGAGCAGAGCTCCCCGCCTCCGCTTGTAGACAA TGTAAAGCCTGTTTCTGCCGCTTTATCCAGGAAGCGGCCCTTTGAAAGCA CCGACACGCCGCTGGTAAAGCGGAAGAAAGTGAAGAAAAACAACAACAAA GCGGACAAGGCTGAAAACAATGTTGCGAAACAAACCCCCGGCCCAATCTT CCGCAAATCTTCCGCTTTGCTCTTGTCGCACTCATATCTTTTGCGCGACC CCCATGTCGAAGACGCTCTGAAAGAGTTTCTGTTCCCCATCATCATGGCG GAAAATGGCGCACGGCCGAAGTGGGCCGCTTGCGTGTTGTGCCTTTCCCA CACCCGCGGCAAGGGGCATATTTACTTTCAGAGCTTCCCACTCAAGATGC GCAAAATCCGCAATCATCTTGCATCTCTCCACGCCAAGCTAGACGCTGAT AATTATGTTCAACTCAACGTTGATGAGAAGCTAGCTTTTCTAAGGCGCGA CCTTCCTCCTTTCAATGCCGTCACAAATCATCCACTCTTACGCAATTTAG AGGACTCTCCCTCGTGGAATGAAGCCGAATACAATCGCGTCTTCCACTCC GATTCTTCGGCAGCACAACTCGCTTCCTATTCCTCGCCGCTTGCTGATAA GGTGCCAGCCAAACAAGTTACACCAGCCGTGCGATCGGCCAAACGGCACA AAAAAGAAGCCGCGCTCAGGAAGGTGTTGACGCGAGCCTTCAATCACCCA AAACAGATGCGACATCTGCCCAAAATGTTCTGCTCGGACGGTGAAGATCT GCGCGCTTCGCCATCCCACTCTTTATGCCTCGATGATCCTGATATTACGT GCGGACGGCGAAACTTTACTCAAGGTATGACCATGAACGTGACTCATGTT CTTGATTCGCGAAATAGAAAGCTGAATTGCTCCCATGAATTTGACAATCT CCGCCACGTCCTTCAAAATGCTAAACCCTTGTCTCACCCGGAAATACCGC GTTTGGTTTTAGGTGACAAGCTCAGGGACCCATTGCGCGAAAAGTTGGCC ACAGCTGATGACGCATTTCTCACATTAACTGCGTCCATGCCGCCCGGTGG TGAAAACACTACAGCCGCAAAGAGGGTAGATGTGCAGTATTTCACGCCTG TGTCTGCACTGATTTTGTTTTACTTAATGCGTGGCGTTCCTTGTTCTGTG ATTACAGAGCTTGTGGATGCGATGTTGCAAGAAGAAGAAAACGTTGGGAA GAGTAGGACTGGAACCATGTTGCCATCGGTTGTACTAACTGGAGACTCCG TGTGTGCTGTGAACATGCAATTGACGAGATTGTTGCTCGACGAAAAGAAT CGGTATAGCTGGGCTCTGACGTTCCTGACACGCCCGTGTCCAGAACTCGG TGAGGATGGTGTGGAAGTCTTGGTTGCTACGAGAAATGAGAAGATGGTTC GAAGTGATTTACATGTTGTGTCTTTGCGTTATGCAGATCGCATTGATGAG AGCATAGTGGCGTTCTTCGATGCGATTTGCGCTGATTGGAAGTCACGTTT GGTGGGGCTTAATTCCGGAATTGACGTCGCTGACGCGAAACGAAAACAGG TTGAGCGGACGATTTTTGAGGTGTTGAAGGCAGTTGAAGGGGTCGGGAAT GTGCTGCTGATTGACAAGGAAGTGGGTAGAAGTGGGCGACCCATCTTTGC AGATGTGGTCGGAAAGATGAGTGAGGAAGAGATGTCACGACTGGTGGATA GTCATTTGAAACGGTTAGGGCAAAGCATGAGCAAAAACGAGATACTCAAT GCTTGGCGTACACTTGCTATCGATGAACGTGTGGAGCATGCTTACAGTCC TCACGCTGATTGTGAAGAAAACAACGTGGAATATGTTGAAAACCGTGGAA TACGAAATTTCGTTGATGATTGGGCTCCGTTTGAGACTCTAAGAAACTTT GCGTACAGTTTGAGACCTTTGTATGAGCGATATGAGATTGGAGCGGATCA GATTGGATGCTTCCGAGCAGGAGTGATCTGTGGTACGAAAGGTAATATCA GTTCGATGGTGGACGCTGGATTGGAACGCGTGTTCCACGCCAGATCGCTT GTGAAGGCGTGGTGTATGATGGTGATGACTGAGAAGGGTGAGAATGGCAA GTGCAAATGGGCGAAGAACGGATGCATGTGGTCGGAAAACTGGGTGAACG TTGTTCGCGAGGTGTATGGAGGGGATGCGCTGGTTGGGGCTGGTTGA
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Coding sequence (CDS) from alignment at tig00004439_pilon:1186945..1189491+

>Gchil1920.t1 ID=Gchil1920.t1|Name=Gchil1920.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2547bp|location=Sequence derived from alignment at tig00004439_pilon:1186945..1189491+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAGCCGGCAGACACTATCGCGTCGCAGCACGCGGCTGCTCTCGCCGC
TGTCAACCTCAAGGAGATGCAACCTGCGCACAcagcgcctatgccagcgc
ccgccgcgccaatgccagcacccgcgccattgccagctgcacagccaccg
ccgccgccgccgccgccgtcgccgctcgcAGTCAAGAGCGACCCTTCTGC
CCCTACGTGGGTCATTTCAAGAGATCCTTCTCCGCGTAGTACTTTTTCAC
CTCCACGCAGCGATCTTGAGCTTCGCCACGCGGCCCCTTTTTCGCACGCC
CGACCCTTCCTGAACCCCGAGCAGAGCTCCCCGCCTCCGCTTGTAGACAA
TGTAAAGCCTGTTTCTGCCGCTTTATCCAGGAAGCGGCCCTTTGAAAGCA
CCGACACGCCGCTGGTAAAGCGGAAGAAAGTGAAGAAAAACAACAACAAA
GCGGACAAGGCTGAAAACAATGTTGCGAAACAAACCCCCGGCCCAATCTT
CCGCAAATCTTCCGCTTTGCTCTTGTCGCACTCATATCTTTTGCGCGACC
CCCATGTCGAAGACGCTCTGAAAGAGTTTCTGTTCCCCATCATCATGGCG
GAAAATGGCGCACGGCCGAAGTGGGCCGCTTGCGTGTTGTGCCTTTCCCA
CACCCGCGGCAAGGGGCATATTTACTTTCAGAGCTTCCCACTCAAGATGC
GCAAAATCCGCAATCATCTTGCATCTCTCCACGCCAAGCTAGACGCTGAT
AATTATGTTCAACTCAACGTTGATGAGAAGCTAGCTTTTCTAAGGCGCGA
CCTTCCTCCTTTCAATGCCGTCACAAATCATCCACTCTTACGCAATTTAG
AGGACTCTCCCTCGTGGAATGAAGCCGAATACAATCGCGTCTTCCACTCC
GATTCTTCGGCAGCACAACTCGCTTCCTATTCCTCGCCGCTTGCTGATAA
GGTGCCAGCCAAACAAGTTACACCAGCCGTGCGATCGGCCAAACGGCACA
AAAAAGAAGCCGCGCTCAGGAAGGTGTTGACGCGAGCCTTCAATCACCCA
AAACAGATGCGACATCTGCCCAAAATGTTCTGCTCGGACGGTGAAGATCT
GCGCGCTTCGCCATCCCACTCTTTATGCCTCGATGATCCTGATATTACGT
GCGGACGGCGAAACTTTACTCAAGGTATGACCATGAACGTGACTCATGTT
CTTGATTCGCGAAATAGAAAGCTGAATTGCTCCCATGAATTTGACAATCT
CCGCCACGTCCTTCAAAATGCTAAACCCTTGTCTCACCCGGAAATACCGC
GTTTGGTTTTAGGTGACAAGCTCAGGGACCCATTGCGCGAAAAGTTGGCC
ACAGCTGATGACGCATTTCTCACATTAACTGCGTCCATGCCGCCCGGTGG
TGAAAACACTACAGCCGCAAAGAGGGTAGATGTGCAGTATTTCACGCCTG
TGTCTGCACTGATTTTGTTTTACTTAATGCGTGGCGTTCCTTGTTCTGTG
ATTACAGAGCTTGTGGATGCGATGTTGCAAGAAGAAGAAAACGTTGGGAA
GAGTAGGACTGGAACCATGTTGCCATCGGTTGTACTAACTGGAGACTCCG
TGTGTGCTGTGAACATGCAATTGACGAGATTGTTGCTCGACGAAAAGAAT
CGGTATAGCTGGGCTCTGACGTTCCTGACACGCCCGTGTCCAGAACTCGG
TGAGGATGGTGTGGAAGTCTTGGTTGCTACGAGAAATGAGAAGATGGTTC
GAAGTGATTTACATGTTGTGTCTTTGCGTTATGCAGATCGCATTGATGAG
AGCATAGTGGCGTTCTTCGATGCGATTTGCGCTGATTGGAAGTCACGTTT
GGTGGGGCTTAATTCCGGAATTGACGTCGCTGACGCGAAACGAAAACAGG
TTGAGCGGACGATTTTTGAGGTGTTGAAGGCAGTTGAAGGGGTCGGGAAT
GTGCTGCTGATTGACAAGGAAGTGGGTAGAAGTGGGCGACCCATCTTTGC
AGATGTGGTCGGAAAGATGAGTGAGGAAGAGATGTCACGACTGGTGGATA
GTCATTTGAAACGGTTAGGGCAAAGCATGAGCAAAAACGAGATACTCAAT
GCTTGGCGTACACTTGCTATCGATGAACGTGTGGAGCATGCTTACAGTCC
TCACGCTGATTGTGAAGAAAACAACGTGGAATATGTTGAAAACCGTGGAA
TACGAAATTTCGTTGATGATTGGGCTCCGTTTGAGACTCTAAGAAACTTT
GCGTACAGTTTGAGACCTTTGTATGAGCGATATGAGATTGGAGCGGATCA
GATTGGATGCTTCCGAGCAGGAGTGATCTGTGGTACGAAAGGTAATATCA
GTTCGATGGTGGACGCTGGATTGGAACGCGTGTTCCACGCCAGATCGCTT
GTGAAGGCGTGGTGTATGATGGTGATGACTGAGAAGGGTGAGAATGGCAA
GTGCAAATGGGCGAAGAACGGATGCATGTGGTCGGAAAACTGGGTGAACG
TTGTTCGCGAGGTGTATGGAGGGGATGCGCTGGTTGGGGCTGGTTGA
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