Gchil835.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil835.t1
Unique Name	Gchil835.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	319

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000017_pilon	contig	tig00000017_pilon:264556..265512 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1173026.Glo7428_2515
Preferred name	sigA
PFAMs	Sigma70_r1_2,Sigma70_r2,Sigma70_r3,Sigma70_r4
Max annot lvl	1117\|Cyanobacteria
KEGG ko	ko:K03086
Evalue	7.18e-121
EggNOG OGs	COG0568@1\|root,COG0568@2\|Bacteria,1G0DU@1117\|Cyanobacteria
Description	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth
COG category	K
BRITE	ko00000,ko03021

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil835	Gchil835	Gracilaria chilensis NLEC103_M9 male	gene	tig00000017_pilon 264556..265512 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil835.t1.start1	Gchil835.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000017_pilon 264556..264558 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil835.t1.CDS1	Gchil835.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000017_pilon 264556..265512 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil835.t1.exon1	Gchil835.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000017_pilon 264556..265512 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil835.t1.stop1	Gchil835.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000017_pilon 265510..265512 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil835.t1	Gchil835.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000017_pilon 264556..265512 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000017_pilon:264556..265512+
coding sequence from alignment at tig00000017_pilon:264556..265512+

mRNA sequence

>Gchil835.t1 ID=Gchil835.t1|Name=Gchil835.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=319bp
MSDNTVRWYLQLIGSDRLLTADEEVKYGRLVASLMHWQRARLQLTETIGR
APTDHEWAHFLDIDPHTFSARLAQARRAKDKMIVCNLRLVVSIAKRYLNR
GMPLSDLIQEGTLGLIRACEKFDADKGFKFSTYATWWVRQAVTRAIADQS
RTVRLPVHLYDTITAIRRGTKYLTNQLARPPLEHELADYCNISVEKLRTT
RINMQSAMPLDCPLTNNDDALTLSDVIESHAESPEDKVESSLLRDDLEHV
VNSLTPRERDVVRMRYGLDDGRAKTLDEIGRVFDVTKERVRQIESKALRK
LRHPFRSAVLKAYTPPGS*

spliced messenger RNA

>Gchil835.t1 ID=Gchil835.t1|Name=Gchil835.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=957bp|location=Sequence derived from alignment at tig00000017_pilon:264556..265512+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGACAATACCGTGCGCTGGTACCTCCAGCTCATCGGCTCGGACCG
TCTGCTCACCGCCGACGAGGAGGTAAAGTACGGCCGTCTGGTCGCCTCCC
TCATGCACTGGCAACGCGCCCGACTGCAGCTCACCGAAACCATCGGCCGC
GCCCCCACCGACCATGAGTGGGCCCACTTTCTCGACATCGACCCCCACAC
CTTTTCCGCCCGTCTCGCCCAAGCGCGTCGCGCCAAGGACAAGATGATAG
TGTGCAATCTTCGTCTCGTCGTGTCCATCGCAAAGCGCTATCTCAACCGC
GGCATGCCACTCTCCGATCTCATCCAGGAGGGCACGCTGGGTCTCATCCG
CGCCTGCGAAAAGTTTGACGCCGACAAGGGTTTCAAGTTTTCCACCTACG
CCACCTGGTGGGTGCGCCAGGCCGTCACCCGCGCCATCGCCGACCAGAGC
CGTACTGTTCGACTCCCCGTCCACCTCTACGACACCATCACCGCCATCCG
CCGCGGCACAAAGTACCTCACCAACCAGCTGGCACGCCCGCCCCTGGAGC
ACGAGCTCGCCGACTATTGCAACATCTCCGTCGAGAAGCTCCGCACCACC
CGCATCAACATGCAGAGCGCCATGCCGCTCGACTGTCCGCTCACCAACAA
CGACGACGCCCTCACCCTCAGCGACGTCATCGAGAGCCACGCCGAGAGCC
CCGAGGACAAGGTTGAAAGCTCCCTTCTGCGCGACGACCTCGAACACGTC
GTCAACAGTCTCACCCCGCGCGAGCGCGATGTCGTCCGTATGCGCTACGG
CCTGGATGACGGCAGGGCAAAGACTCTTGACGAGATTGGCCGTGTGTTTG
ACGTCACCAAGGAGCGCGTCAGACAGATTGAGTCCAAGGCTCTGCGGAAG
CTTCGACACCCCTTCCGCTCCGCTGTGCTCAAGGCCTACACCCCTCCGGG
CTCATAG

protein sequence of Gchil835.t1

>Gchil835.t1 ID=Gchil835.t1|Name=Gchil835.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=319bp
MSDNTVRWYLQLIGSDRLLTADEEVKYGRLVASLMHWQRARLQLTETIGR
APTDHEWAHFLDIDPHTFSARLAQARRAKDKMIVCNLRLVVSIAKRYLNR
GMPLSDLIQEGTLGLIRACEKFDADKGFKFSTYATWWVRQAVTRAIADQS
RTVRLPVHLYDTITAIRRGTKYLTNQLARPPLEHELADYCNISVEKLRTT
RINMQSAMPLDCPLTNNDDALTLSDVIESHAESPEDKVESSLLRDDLEHV
VNSLTPRERDVVRMRYGLDDGRAKTLDEIGRVFDVTKERVRQIESKALRK
LRHPFRSAVLKAYTPPGS*

mRNA from alignment at tig00000017_pilon:264556..265512+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil835.t1 ID=Gchil835.t1|Name=Gchil835.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=957bp|location=Sequence derived from alignment at tig00000017_pilon:264556..265512+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCCGACAATACCGTGCGCTGGTACCTCCAGCTCATCGGCTCGGACCG
TCTGCTCACCGCCGACGAGGAGGTAAAGTACGGCCGTCTGGTCGCCTCCC
TCATGCACTGGCAACGCGCCCGACTGCAGCTCACCGAAACCATCGGCCGC
GCCCCCACCGACCATGAGTGGGCCCACTTTCTCGACATCGACCCCCACAC
CTTTTCCGCCCGTCTCGCCCAAGCGCGTCGCGCCAAGGACAAGATGATAG
TGTGCAATCTTCGTCTCGTCGTGTCCATCGCAAAGCGCTATCTCAACCGC
GGCATGCCACTCTCCGATCTCATCCAGGAGGGCACGCTGGGTCTCATCCG
CGCCTGCGAAAAGTTTGACGCCGACAAGGGTTTCAAGTTTTCCACCTACG
CCACCTGGTGGGTGCGCCAGGCCGTCACCCGCGCCATCGCCGACCAGAGC
CGTACTGTTCGACTCCCCGTCCACCTCTACGACACCATCACCGCCATCCG
CCGCGGCACAAAGTACCTCACCAACCAGCTGGCACGCCCGCCCCTGGAGC
ACGAGCTCGCCGACTATTGCAACATCTCCGTCGAGAAGCTCCGCACCACC
CGCATCAACATGCAGAGCGCCATGCCGCTCGACTGTCCGCTCACCAACAA
CGACGACGCCCTCACCCTCAGCGACGTCATCGAGAGCCACGCCGAGAGCC
CCGAGGACAAGGTTGAAAGCTCCCTTCTGCGCGACGACCTCGAACACGTC
GTCAACAGTCTCACCCCGCGCGAGCGCGATGTCGTCCGTATGCGCTACGG
CCTGGATGACGGCAGGGCAAAGACTCTTGACGAGATTGGCCGTGTGTTTG
ACGTCACCAAGGAGCGCGTCAGACAGATTGAGTCCAAGGCTCTGCGGAAG
CTTCGACACCCCTTCCGCTCCGCTGTGCTCAAGGCCTACACCCCTCCGGG
CTCATAG

Coding sequence (CDS) from alignment at tig00000017_pilon:264556..265512+

>Gchil835.t1 ID=Gchil835.t1|Name=Gchil835.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=957bp|location=Sequence derived from alignment at tig00000017_pilon:264556..265512+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCCGACAATACCGTGCGCTGGTACCTCCAGCTCATCGGCTCGGACCG
TCTGCTCACCGCCGACGAGGAGGTAAAGTACGGCCGTCTGGTCGCCTCCC
TCATGCACTGGCAACGCGCCCGACTGCAGCTCACCGAAACCATCGGCCGC
GCCCCCACCGACCATGAGTGGGCCCACTTTCTCGACATCGACCCCCACAC
CTTTTCCGCCCGTCTCGCCCAAGCGCGTCGCGCCAAGGACAAGATGATAG
TGTGCAATCTTCGTCTCGTCGTGTCCATCGCAAAGCGCTATCTCAACCGC
GGCATGCCACTCTCCGATCTCATCCAGGAGGGCACGCTGGGTCTCATCCG
CGCCTGCGAAAAGTTTGACGCCGACAAGGGTTTCAAGTTTTCCACCTACG
CCACCTGGTGGGTGCGCCAGGCCGTCACCCGCGCCATCGCCGACCAGAGC
CGTACTGTTCGACTCCCCGTCCACCTCTACGACACCATCACCGCCATCCG
CCGCGGCACAAAGTACCTCACCAACCAGCTGGCACGCCCGCCCCTGGAGC
ACGAGCTCGCCGACTATTGCAACATCTCCGTCGAGAAGCTCCGCACCACC
CGCATCAACATGCAGAGCGCCATGCCGCTCGACTGTCCGCTCACCAACAA
CGACGACGCCCTCACCCTCAGCGACGTCATCGAGAGCCACGCCGAGAGCC
CCGAGGACAAGGTTGAAAGCTCCCTTCTGCGCGACGACCTCGAACACGTC
GTCAACAGTCTCACCCCGCGCGAGCGCGATGTCGTCCGTATGCGCTACGG
CCTGGATGACGGCAGGGCAAAGACTCTTGACGAGATTGGCCGTGTGTTTG
ACGTCACCAAGGAGCGCGTCAGACAGATTGAGTCCAAGGCTCTGCGGAAG
CTTCGACACCCCTTCCGCTCCGCTGTGCTCAAGGCCTACACCCCTCCGGG
CTCATAG