Gchil1880.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1880.t1
Unique NameGchil1880.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length511
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004439_piloncontigtig00004439_pilon:949795..951327 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog981085.XP_010101561.1
Max annot lvl35493|Streptophyta
GOsGO:0003674,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008198,GO:0009507,GO:0009526,GO:0009536,GO:0009941,GO:0009987,GO:0010467,GO:0016043,GO:0016226,GO:0019538,GO:0022607,GO:0031163,GO:0031967,GO:0031974,GO:0031975,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046872,GO:0046914,GO:0048037,GO:0051186,GO:0051536,GO:0051537,GO:0051540,GO:0051604,GO:0070013,GO:0071704,GO:0071840,GO:0097428,GO:1901564
Evalue1.99e-69
EggNOG OGsCOG0316@1|root,KOG1119@2759|Eukaryota,37N10@33090|Viridiplantae,3GD8F@35493|Streptophyta,4JNIS@91835|fabids
Descriptionprotein At5g03900, chloroplastic-like
COG categoryCU
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1880Gchil1880Gracilaria chilensis NLEC103_M9 malegenetig00004439_pilon 949795..951327 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1880.t1.stop1Gchil1880.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004439_pilon 949795..949797 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1880.t1.CDS1Gchil1880.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 949795..951327 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1880.t1.exon1Gchil1880.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 949795..951327 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1880.t1.start1Gchil1880.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004439_pilon 951325..951327 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1880.t1Gchil1880.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004439_pilon 949795..951327 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1880.t1 ID=Gchil1880.t1|Name=Gchil1880.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=511bp
MMLVAFVSSAPSPSHAALAVRSAPSLSPRPLASRLHRTAAPRRTAFIPTT
PRIPRRNRSPCPCRPAPVPCAPRAALSDTSNLQDVPEVVLRAVEASRQLR
QTVPDIAARSGLSVADAATYAAKLAALTRAPIDVTDTGDLAYRFPSNVRT
LLRAASFRAKLRMAWQTAFPPLYSALRLAFGALLILSIVVTFVAIAALSS
ASSSSEDDRRSSRSSGFLPVRFFAPDIFDIIWYSRATSRYRRVKDPDEMS
FLEAVYSFVFGDGNPNEDIESRRYRTIAAVIRSSKGAVTAEQLAPYLDPT
FSEGNVVDESFILPVLQRFNGHPEVTEDGDIIYVFPDFLRSGTSSVEFVG
AVSPLQEQLLSLTRATPAQNVLTVGLGAVNVLGVLTLGAKLATVVAVTPD
AAAFISLIKSVYPALATYATSFIAVPLFRWMRQLRVNTGIRQRNAARQKA
AERLARPNSSTRRKMRAAEQFAIKEGASIGSVVYSSDRDLLDQTTVQREV
VDDFDKRLHG*
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spliced messenger RNA

>Gchil1880.t1 ID=Gchil1880.t1|Name=Gchil1880.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1533bp|location=Sequence derived from alignment at tig00004439_pilon:949795..951327- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGCTCGTCGCGTTCGTGTCGTCTGCGCCGTCGCCGTCGCACGCCGC
GCTCGCAGTGCGTAGCGCCCCGTCCCTCTCGCCGCGACCCCTAGCAAGTC
GCCTCCACCGCACTGCAGCGCCGCGCCGCACCGCCTTCATCCCCACCACG
CCGCGCATCCCGCGTCGGAACCGCTCTCCCTGTCCTTGTCGCCCTGCGCC
CGTCCCGTGCGCCCCGCGCGCCGCGCTCTCCGACACCTCCAACCTGCAAG
ACGTGCCCGAAGTCGTGCTGCGAGCCGTCGAGGCCTCGCGTCAGCTGCGT
CAGACCGTGCCTGATATCGCCGCCCGCTCCGGACTCTCCGTTGCAGATGC
TGCCACCTATGCCGCAAAGCTCGCCGCTCTCACGCGCGCCCCGATTGATG
TCACCGACACCGGCGATCTTGCTTATCGCTTCCCGTCAAACGTGCGTACT
TTGCTTCGTGCCGCTTCGTTCCGCGCAAAGCTGCGCATGGCTTGGCAAAC
CGCCTTTCCTCCTTTGTACTCCGCGCTTCGCCTCGCGTTTGGCGCCTTGT
TGATACTCAGCATCGTCGTTACCTTTGTTGCCATTGCTGCCTTGTCAAGT
GCCTCCAGCTCGTCTGAAGATGACCGACGCTCGTCACGCTCCTCCGGCTT
TCTGCCGGTGCGTTTCTTTGCTCCGGATATATTCGATATCATTTGGTATT
CGCGCGCCACCAGCCGTTACCGTCGCGTCAAGGACCCGGATGAAATGTCC
TTTTTGGAGGCTGTCTACTCGTTTGTCTTCGGCGACGGCAATCCGAACGA
AGACATAGAGTCCCGCAGATACCGTACCATCGCAGCCGTCATTCGCTCAA
GTAAGGGTGCTGTCACTGCCGAGCAGTTGGCCCCGTATCTTGACCCCACT
TTTTCTGAAGGTAATGTAGTGGATGAAAGTTTTATTCTTCCCGTACTTCA
GCGTTTCAATGGGCATCCAGAGGTCACGGAAGATGGCGACATTATATACG
TGTTTCCGGATTTCCTCAGAAGCGGAACTTCTAGTGTGGAGTTTGTTGGA
GCTGTATCCCCCTTACAAGAGCAGCTTTTGTCACTTACACGCGCAACGCC
TGCTCAAAACGTGCTCACAGTGGGCTTGGGCGCTGTAAACGTTCTGGGCG
TGCTCACTCTTGGAGCAAAACTGGCGACTGTCGTCGCTGTCACGCCAGAC
GCAGCCGCATTCATCTCCTTGATCAAGTCTGTCTACCCAGCGCTAGCCAC
CTATGCTACGTCGTTCATTGCCGTGCCTCTGTTTCGTTGGATGCGTCAAT
TACGTGTCAATACCGGTATTCGACAGAGGAATGCAGCTCGTCAAAAGGCT
GCGGAAAGATTGGCCCGTCCCAACTCCTCTACCAGGCGAAAGATGCGCGC
AGCTGAACAGTTCGCTATCAAAGAAGGAGCTTCAATTGGAAGTGTCGTTT
ACTCGAGCGACAGAGATCTTTTGGATCAGACCACTGTTCAAAGAGAGGTT
GTTGATGATTTTGACAAAAGACTCCACGGATGA
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protein sequence of Gchil1880.t1

>Gchil1880.t1 ID=Gchil1880.t1|Name=Gchil1880.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=511bp
MMLVAFVSSAPSPSHAALAVRSAPSLSPRPLASRLHRTAAPRRTAFIPTT
PRIPRRNRSPCPCRPAPVPCAPRAALSDTSNLQDVPEVVLRAVEASRQLR
QTVPDIAARSGLSVADAATYAAKLAALTRAPIDVTDTGDLAYRFPSNVRT
LLRAASFRAKLRMAWQTAFPPLYSALRLAFGALLILSIVVTFVAIAALSS
ASSSSEDDRRSSRSSGFLPVRFFAPDIFDIIWYSRATSRYRRVKDPDEMS
FLEAVYSFVFGDGNPNEDIESRRYRTIAAVIRSSKGAVTAEQLAPYLDPT
FSEGNVVDESFILPVLQRFNGHPEVTEDGDIIYVFPDFLRSGTSSVEFVG
AVSPLQEQLLSLTRATPAQNVLTVGLGAVNVLGVLTLGAKLATVVAVTPD
AAAFISLIKSVYPALATYATSFIAVPLFRWMRQLRVNTGIRQRNAARQKA
AERLARPNSSTRRKMRAAEQFAIKEGASIGSVVYSSDRDLLDQTTVQREV
VDDFDKRLHG*
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mRNA from alignment at tig00004439_pilon:949795..951327-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1880.t1 ID=Gchil1880.t1|Name=Gchil1880.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1533bp|location=Sequence derived from alignment at tig00004439_pilon:949795..951327- (Gracilaria chilensis NLEC103_M9 male)
ATGATGCTCGTCGCGTTCGTGTCGTCTGCGCCGTCGCCGTCGCACGCCGC
GCTCGCAGTGCGTAGCGCCCCGTCCCTCTCGCCGCGACCCCTAGCAAGTC
GCCTCCACCGCACTGCAGCGCCGCGCCGCACCGCCTTCATCCCCACCACG
CCGCGCATCCCGCGTCGGAACCGCTCTCCCTGTCCTTGTCGCCCTGCGCC
CGTCCCGTGCGCCCCGCGCGCCGCGCTCTCCGACACCTCCAACCTGCAAG
ACGTGCCCGAAGTCGTGCTGCGAGCCGTCGAGGCCTCGCGTCAGCTGCGT
CAGACCGTGCCTGATATCGCCGCCCGCTCCGGACTCTCCGTTGCAGATGC
TGCCACCTATGCCGCAAAGCTCGCCGCTCTCACGCGCGCCCCGATTGATG
TCACCGACACCGGCGATCTTGCTTATCGCTTCCCGTCAAACGTGCGTACT
TTGCTTCGTGCCGCTTCGTTCCGCGCAAAGCTGCGCATGGCTTGGCAAAC
CGCCTTTCCTCCTTTGTACTCCGCGCTTCGCCTCGCGTTTGGCGCCTTGT
TGATACTCAGCATCGTCGTTACCTTTGTTGCCATTGCTGCCTTGTCAAGT
GCCTCCAGCTCGTCTGAAGATGACCGACGCTCGTCACGCTCCTCCGGCTT
TCTGCCGGTGCGTTTCTTTGCTCCGGATATATTCGATATCATTTGGTATT
CGCGCGCCACCAGCCGTTACCGTCGCGTCAAGGACCCGGATGAAATGTCC
TTTTTGGAGGCTGTCTACTCGTTTGTCTTCGGCGACGGCAATCCGAACGA
AGACATAGAGTCCCGCAGATACCGTACCATCGCAGCCGTCATTCGCTCAA
GTAAGGGTGCTGTCACTGCCGAGCAGTTGGCCCCGTATCTTGACCCCACT
TTTTCTGAAGGTAATGTAGTGGATGAAAGTTTTATTCTTCCCGTACTTCA
GCGTTTCAATGGGCATCCAGAGGTCACGGAAGATGGCGACATTATATACG
TGTTTCCGGATTTCCTCAGAAGCGGAACTTCTAGTGTGGAGTTTGTTGGA
GCTGTATCCCCCTTACAAGAGCAGCTTTTGTCACTTACACGCGCAACGCC
TGCTCAAAACGTGCTCACAGTGGGCTTGGGCGCTGTAAACGTTCTGGGCG
TGCTCACTCTTGGAGCAAAACTGGCGACTGTCGTCGCTGTCACGCCAGAC
GCAGCCGCATTCATCTCCTTGATCAAGTCTGTCTACCCAGCGCTAGCCAC
CTATGCTACGTCGTTCATTGCCGTGCCTCTGTTTCGTTGGATGCGTCAAT
TACGTGTCAATACCGGTATTCGACAGAGGAATGCAGCTCGTCAAAAGGCT
GCGGAAAGATTGGCCCGTCCCAACTCCTCTACCAGGCGAAAGATGCGCGC
AGCTGAACAGTTCGCTATCAAAGAAGGAGCTTCAATTGGAAGTGTCGTTT
ACTCGAGCGACAGAGATCTTTTGGATCAGACCACTGTTCAAAGAGAGGTT
GTTGATGATTTTGACAAAAGACTCCACGGATGA
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Coding sequence (CDS) from alignment at tig00004439_pilon:949795..951327-

>Gchil1880.t1 ID=Gchil1880.t1|Name=Gchil1880.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1533bp|location=Sequence derived from alignment at tig00004439_pilon:949795..951327- (Gracilaria chilensis NLEC103_M9 male)
ATGATGCTCGTCGCGTTCGTGTCGTCTGCGCCGTCGCCGTCGCACGCCGC
GCTCGCAGTGCGTAGCGCCCCGTCCCTCTCGCCGCGACCCCTAGCAAGTC
GCCTCCACCGCACTGCAGCGCCGCGCCGCACCGCCTTCATCCCCACCACG
CCGCGCATCCCGCGTCGGAACCGCTCTCCCTGTCCTTGTCGCCCTGCGCC
CGTCCCGTGCGCCCCGCGCGCCGCGCTCTCCGACACCTCCAACCTGCAAG
ACGTGCCCGAAGTCGTGCTGCGAGCCGTCGAGGCCTCGCGTCAGCTGCGT
CAGACCGTGCCTGATATCGCCGCCCGCTCCGGACTCTCCGTTGCAGATGC
TGCCACCTATGCCGCAAAGCTCGCCGCTCTCACGCGCGCCCCGATTGATG
TCACCGACACCGGCGATCTTGCTTATCGCTTCCCGTCAAACGTGCGTACT
TTGCTTCGTGCCGCTTCGTTCCGCGCAAAGCTGCGCATGGCTTGGCAAAC
CGCCTTTCCTCCTTTGTACTCCGCGCTTCGCCTCGCGTTTGGCGCCTTGT
TGATACTCAGCATCGTCGTTACCTTTGTTGCCATTGCTGCCTTGTCAAGT
GCCTCCAGCTCGTCTGAAGATGACCGACGCTCGTCACGCTCCTCCGGCTT
TCTGCCGGTGCGTTTCTTTGCTCCGGATATATTCGATATCATTTGGTATT
CGCGCGCCACCAGCCGTTACCGTCGCGTCAAGGACCCGGATGAAATGTCC
TTTTTGGAGGCTGTCTACTCGTTTGTCTTCGGCGACGGCAATCCGAACGA
AGACATAGAGTCCCGCAGATACCGTACCATCGCAGCCGTCATTCGCTCAA
GTAAGGGTGCTGTCACTGCCGAGCAGTTGGCCCCGTATCTTGACCCCACT
TTTTCTGAAGGTAATGTAGTGGATGAAAGTTTTATTCTTCCCGTACTTCA
GCGTTTCAATGGGCATCCAGAGGTCACGGAAGATGGCGACATTATATACG
TGTTTCCGGATTTCCTCAGAAGCGGAACTTCTAGTGTGGAGTTTGTTGGA
GCTGTATCCCCCTTACAAGAGCAGCTTTTGTCACTTACACGCGCAACGCC
TGCTCAAAACGTGCTCACAGTGGGCTTGGGCGCTGTAAACGTTCTGGGCG
TGCTCACTCTTGGAGCAAAACTGGCGACTGTCGTCGCTGTCACGCCAGAC
GCAGCCGCATTCATCTCCTTGATCAAGTCTGTCTACCCAGCGCTAGCCAC
CTATGCTACGTCGTTCATTGCCGTGCCTCTGTTTCGTTGGATGCGTCAAT
TACGTGTCAATACCGGTATTCGACAGAGGAATGCAGCTCGTCAAAAGGCT
GCGGAAAGATTGGCCCGTCCCAACTCCTCTACCAGGCGAAAGATGCGCGC
AGCTGAACAGTTCGCTATCAAAGAAGGAGCTTCAATTGGAAGTGTCGTTT
ACTCGAGCGACAGAGATCTTTTGGATCAGACCACTGTTCAAAGAGAGGTT
GTTGATGATTTTGACAAAAGACTCCACGGATGA
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